Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000165

Orthogroup ID

OG0014550

Physical Location & Seq

Genomic Coordinates Reverse (-)

276250 .. 278060

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_165G00437180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGAGTGAATTGAAAGAGATACATGGGATGATGATCACTACCTCAGTTGATAAGAATGTAATCCCATTGAGTAGGCTTATTGATTTCTGTGCTAATTCTGAAGCTGGAGACATCAGCTATGCCAAGTCGGTTTTTCGCCAAATTGAGCAGCCTAGTGTCTATATCTGGAACTCAATGATCAGAGGGTGTTCGAATAGCGAGAACCCAGTTGAGTCTTTGATAATGTATAGAGAAATGGTGCATAGGGGTTATGCCCCTGACCATTTTACATTTCCATTTGTGCTCAAAGGGTGTTCGATAATCAGTGATGTTCATTATGGGAAATGTGTTCATAGCTGCATTGCGAAAACTGGGTTTGACTTGAATGTGTATGCCTCTTCTGGTTTACTCAATATGTATGCTTGTTGTGCAGATATGGAATCTGCACAGAAGGTGTTTGATAAAATGCCTAAGTGGAATGTAGTTGCTTGGACTAGTCTGATTTCCGGGTTTGTTGGGAACAATCAAGCTAGTGAGGCTATAAAGGTGTTTATGGACATGGAACTTTGTAATGTCGAGCCTAATGAGATTACGATGGTCAATGTATTAGTCGCTTGTGCTCGAAGTAGGGATATCAATACTGGGAAGTGGGTTCACAGTCGTATTCGCCAACTTGGGTTTGATCCGTTTGGATCGAGTTTTGATTTTAATGTGATTCTTGCAACTGCCATTGTAGATATGTATGCAAAATGTGGCAGCTTGAGAACAGCAAGGCATCTGTTCGACAAGATGCCTGACAGGAACTTGGTTGCCTGGAATTCCATGATCAGTGCCTACAATCAATATGGCCAGGGTGATAAAGCGATTGATCTCTTTTTTGATATGCGGATTGCTGGGTTTGTTCCGGACCAAGCTACCATTCTGGGTGTGATTGGTTCTTGTGCGCAGTTGGGGGCTTTGGCATTGGGACAAAGTCTTCATTCAAGATACATAACAGAGTTGGAGCCTCATGTTAGTGGAGTCTTGGTCCTTCTTTCCAATATATATGCTAGGGCTGGAAGATGGCAAGAAGTAAAGCTGACTAGAGAATTGATGAAAGATAGGAGGATTGCCAAAAGTCTTGGATTTCTAATCCAGGGTGTAAAGCTTGCAATCAACCTGAAGTTCAAGAATGTCATTCTGGAGAGTGACTGCAAAGAACTTGTTGATGCCCTCAACAACAATATCGAGAGAGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

406

Amino Acids

45.35

Weight (kDa)

7.08

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	51 - 98	4e-09	PPR repeat family
PPR_2	PF13041	153 - 200	7e-10	PPR repeat family
PPR_2	PF13041	261 - 308	2.5e-08	PPR repeat family
PPR	PF01535	263 - 292	9.2e-07	PPR repeat
E_motif	PF20431	324 - 366	8.7e-11	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05240
fragaria_vesca	FvH4_6g05570
malus_domestica	MD12G1221500.v1.1
prunus_persica	Prupe.6G328300_v2.0.a1
pyrus_communis	pycom12g20770
rosa_chinensis	RchiOBHm_Chr3g0454351
rosa_laevigata	RLG00000025451 RLG00000025452 RLG00000025458
rosa_multiflora	Rmu_sc0000006.1_g000021 Rmu_sc0007209.1_g000013
rosa_roxburghii	Rroxscaffold_165G00437180 Rroxscaffold_6G00425180
rosa_rugosa	Rorug02G0654500
rosa_samantha	Rh3BG060200 Rh3DG060600
rosa_wichuraiana	Rw3G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	924
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	1 cut(s)	865
AclWI	GGATC	2 cut(s)	656, 679
AcoI	YGGCCR	1 cut(s)	826
AcsI	RAATTY	1 cut(s)	796
AcuI	CTGAAG	2 cut(s)	120, 1160
AgsI	TTSAA	4 cut(s)	13, 364, 963, 1147
AhlI	ACTAGT	1 cut(s)	473
AjnI	CCWGG	3 cut(s)	791, 828, 1113
AjuI	GAANNNNNNNTTGG	2 cut(s)	882, 914
AluBI	AGCT	8 cut(s)	104, 117, 336, 509, 738, 893, 1057, 1126
AluI	AGCT	8 cut(s)	104, 117, 336, 509, 738, 893, 1057, 1126
Alw21I	GWGCWC	2 cut(s)	285, 601
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	656, 679
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	1 cut(s)	826
ApeKI	GCWGC	3 cut(s)	148, 336, 735
ApoI	RAATTY	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	925
AspS9I	GGNCC	2 cut(s)	886, 1006
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	845
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	886, 1006
BalI	TGGCCA	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	947
Bbv12I	GWGCWC	2 cut(s)	285, 601
BbvI	GCAGC	3 cut(s)	160, 323, 747
BccI	CCATC	2 cut(s)	568, 1035
BciT130I	CCWGG	3 cut(s)	793, 830, 1115
BclI	TGATCA	3 cut(s)	33, 177, 804
BcnI	CCSGG	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	102
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	5 cut(s)	153, 474, 510, 1029, 1062
BisI	GCNGC	3 cut(s)	149, 337, 736
BlsI	GCNGC	3 cut(s)	150, 338, 737
Bme1390I	CCNGG	4 cut(s)	487, 793, 830, 1115
Bme18I	GGWCC	2 cut(s)	886, 1006
BmgT120I	GGNCC	2 cut(s)	886, 1006
BmiI	GGNNCC	1 cut(s)	984
BmrFI	CCNGG	4 cut(s)	487, 793, 830, 1115
BmrI	ACTGGG	3 cut(s)	200, 360, 630
BmsI	GCATC	3 cut(s)	759, 763, 1177
BmuI	ACTGGG	3 cut(s)	200, 360, 630
BpiI	GAAGAC	1 cut(s)	947
BpmI	CTGGAG	2 cut(s)	126, 1181
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	760
BpuMI	CCSGG	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	829, 1114
BsaWI	WCCGGW	1 cut(s)	883
BsaXI	ACNNNNNCTCC	2 cut(s)	990, 1020
Bse1I	ACTGG	3 cut(s)	206, 355, 625
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	883
BseBI	CCWGG	3 cut(s)	793, 830, 1115
BseDI	CCNNGG	2 cut(s)	829, 1114
BseGI	GGATG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	206, 355, 625
BseXI	GCAGC	3 cut(s)	160, 323, 747
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	2 cut(s)	408, 429
BshFI	GGCC	1 cut(s)	828
BsiHKAI	GWGCWC	2 cut(s)	285, 601
BsiSI	CCGG	2 cut(s)	486, 884
BslFI	GGGAC	1 cut(s)	960
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	1 cut(s)	960
BsnI	GGCC	1 cut(s)	828
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	285, 601
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
BspACI	CCGC	1 cut(s)	865
BspANI	GGCC	1 cut(s)	828
BspCNI	CTCAG	1 cut(s)	56
BspEI	TCCGGA	1 cut(s)	883
BspLI	GGNNCC	1 cut(s)	984
BspPI	GGATC	2 cut(s)	656, 679
BspT104I	TTCGAA	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	206, 355, 625
BssECI	CCNNGG	2 cut(s)	829, 1114
BssMI	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
Bst2UI	CCWGG	3 cut(s)	793, 830, 1115
Bst4CI	ACNGT	1 cut(s)	638
Bst6I	CTCTTC	1 cut(s)	382
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	1128
BstDEI	CTNAG	2 cut(s)	43, 450
BstF5I	GGATG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	925
BstKTI	GATC	6 cut(s)	36, 180, 664, 674, 807, 850
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 515
BstNI	CCWGG	3 cut(s)	793, 830, 1115
BstSCI	CCNGG	4 cut(s)	485, 791, 828, 1113
BstV1I	GCAGC	3 cut(s)	160, 323, 747
BstV2I	GAAGAC	1 cut(s)	947
BsuRI	GGCC	1 cut(s)	828
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	310, 814
Cac8I	GCNNGC	1 cut(s)	1128
CfoI	GCGC	1 cut(s)	925
Cfr13I	GGNCC	2 cut(s)	886, 1006
CviAII	CATG	4 cut(s)	23, 538, 802, 989
DdeI	CTNAG	2 cut(s)	43, 450
DpnI	GATC	6 cut(s)	35, 179, 663, 673, 806, 849
DpnII	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
EaeI	YGGCCR	1 cut(s)	826
Eam1104I	CTCTTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	2 cut(s)	886, 1006
Eco57I	CTGAAG	2 cut(s)	120, 1160
EcoRI	GAATTC	1 cut(s)	796
EcoRII	CCWGG	3 cut(s)	791, 828, 1113
EcoRV	GATATC	1 cut(s)	613
FaeI	CATG	4 cut(s)	26, 541, 805, 992
FaqI	GGGAC	1 cut(s)	960
FatI	CATG	4 cut(s)	22, 537, 801, 988
FbaI	TGATCA	3 cut(s)	33, 177, 804
Fnu4HI	GCNGC	3 cut(s)	149, 337, 736
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	3 cut(s)	149, 337, 736
FspBI	CTAG	5 cut(s)	153, 474, 510, 1029, 1062
FspI	TGCGCA	1 cut(s)	924
GlaI	GCGC	1 cut(s)	924
GluI	GCNGC	3 cut(s)	149, 337, 736
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	2 cut(s)	126, 1181
HaeIII	GGCC	1 cut(s)	828
HapII	CCGG	2 cut(s)	486, 884
HhaI	GCGC	1 cut(s)	925
Hin1II	CATG	4 cut(s)	26, 541, 805, 992
Hin6I	GCGC	1 cut(s)	923
HinP1I	GCGC	1 cut(s)	923
HindIII	AAGCTT	1 cut(s)	1124
HinfI	GANTC	4 cut(s)	212, 419, 694, 999
HpaII	CCGG	2 cut(s)	486, 884
HphI	GGTGA	1 cut(s)	845
Hpy166II	GTNNAC	2 cut(s)	386, 634
Hpy188I	TCNGA	3 cut(s)	100, 182, 480
Hpy188III	TCNNGA	6 cut(s)	166, 884, 963, 1147, 1160, 1207
Hpy8I	GTNNAC	2 cut(s)	386, 634
HpyAV	CCTTC	2 cut(s)	424, 1019
HpyCH4III	ACNGT	1 cut(s)	638
HpyCH4V	TGCA	8 cut(s)	241, 339, 410, 425, 701, 725, 1130, 1173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 515
HpyF3I	CTNAG	2 cut(s)	43, 450
Hsp92II	CATG	4 cut(s)	26, 541, 805, 992
HspAI	GCGC	1 cut(s)	923
Kpn2I	TCCGGA	1 cut(s)	883
Ksp22I	TGATCA	3 cut(s)	33, 177, 804
Kzo9I	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
LmnI	GCTCC	1 cut(s)	982
Lsp1109I	GCAGC	3 cut(s)	160, 323, 747
LweI	GCATC	3 cut(s)	759, 763, 1177
MaeI	CTAG	5 cut(s)	153, 474, 510, 1029, 1062
MaeIII	GTNAC	1 cut(s)	1166
MalI	GATC	6 cut(s)	35, 179, 663, 673, 806, 849
MboI	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
MboII	GAAGA	3 cut(s)	369, 947, 1050
MhlI	GDGCHC	2 cut(s)	285, 601
MlsI	TGGCCA	1 cut(s)	828
MluCI	AATT	6 cut(s)	8, 94, 141, 796, 1067, 1216
MluNI	TGGCCA	1 cut(s)	828
MlyI	GAGTC	2 cut(s)	221, 1008
MmeI	TCCRAC	1 cut(s)	960
MnlI	CCTC	8 cut(s)	52, 176, 385, 508, 996, 1077, 1202, 1205
Mox20I	TGGCCA	1 cut(s)	828
MroI	TCCGGA	1 cut(s)	883
MscI	TGGCCA	1 cut(s)	828
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	1 cut(s)	993
Msp20I	TGGCCA	1 cut(s)	828
MspI	CCGG	2 cut(s)	486, 884
MspR9I	CCNGG	4 cut(s)	487, 793, 830, 1115
MvaI	CCWGG	3 cut(s)	793, 830, 1115
MwoI	GCNNNNNNNGC	2 cut(s)	407, 515
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
NlaIII	CATG	4 cut(s)	26, 541, 805, 992
NlaIV	GGNNCC	1 cut(s)	984
NmuCI	GTSAC	1 cut(s)	1166
NsbI	TGCGCA	1 cut(s)	924
NspV	TTCGAA	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	419, 694
PflFI	GACNNNGTC	1 cut(s)	951
PkrI	GCNGC	3 cut(s)	150, 338, 737
PleI	GAGTC	2 cut(s)	220, 1007
PpsI	GAGTC	2 cut(s)	220, 1007
Psp6I	CCWGG	3 cut(s)	791, 828, 1113
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	3 cut(s)	791, 828, 1113
PspN4I	GGNNCC	1 cut(s)	984
PspPI	GGNCC	2 cut(s)	886, 1006
PsyI	GACNNNGTC	1 cut(s)	951
RseI	CAYNNNNRTG	1 cut(s)	993
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	3 cut(s)	149, 337, 736
Sau3AI	GATC	6 cut(s)	33, 177, 661, 671, 804, 847
Sau96I	GGNCC	2 cut(s)	886, 1006
SchI	GAGTC	2 cut(s)	221, 1008
ScrFI	CCNGG	4 cut(s)	487, 793, 830, 1115
SduI	GDGCHC	2 cut(s)	285, 601
SfaNI	GCATC	3 cut(s)	759, 763, 1177
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	2 cut(s)	886, 1006
SmiMI	CAYNNNNRTG	1 cut(s)	993
SmlI	CTYRAG	1 cut(s)	739
SmoI	CTYRAG	1 cut(s)	739
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	6 cut(s)	8, 94, 141, 796, 1067, 1216
SsiI	CCGC	1 cut(s)	865
SspMI	CTAG	5 cut(s)	153, 474, 510, 1029, 1062
StyD4I	CCNGG	4 cut(s)	485, 791, 828, 1113
TaaI	ACNGT	1 cut(s)	638
TaqI	TCGA	7 cut(s)	191, 296, 555, 601, 674, 762, 1206
TasI	AATT	6 cut(s)	8, 94, 141, 796, 1067, 1216
TfiI	GAWTC	2 cut(s)	419, 694
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	2 cut(s)	310, 814
TseFI	GTSAC	1 cut(s)	1166
TseI	GCWGC	3 cut(s)	148, 336, 735
Tsp45I	GTSAC	1 cut(s)	1166
TspDTI	ATGAA	4 cut(s)	302, 320, 947, 1088
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	310, 814
Tth111I	GACNNNGTC	1 cut(s)	951
VpaK11BI	GGWCC	2 cut(s)	886, 1006
XapI	RAATTY	1 cut(s)	796
XspI	CTAG	5 cut(s)	153, 474, 510, 1029, 1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.