FvH4_6g06571

F-actin-capping proteins bind in a Ca(2 )-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008545
Physical Location & Seq
Forward (+)
3853704 .. 3856845
3142 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06571.t1

Sequence Viewer

Length: 915 bp
ATGGCGGACGAGGAAGAATCAGAGCTAAACGAGAAGCAGAAGATTGATATAGCCAAGTGGTTCCTCCTCAACTCTCCTCCCGGCGAAATCCAATTCGTCGCCGAAGATGTGAAGGCGGTACTGAACGACGACGTTTTGTACGAAGAGGCGCTGTCAGAGGCTTTCCCACTCTATAACAAATCCCAGATGATTTCGCTGGAAATGCCTAGTGGAATTGGAGATGTTCTTGTTACATCTTACGGAGAGCTCAGTGGGACTGAGTATCTTGATCCCAGGACTGCTCATGTTGCTGTGGTTGACCATATCAAACAGGTTTGTACAGACGTGAGACCCGCATTGGATGAGGAACTTTCATCTGCATATGTTGAGGAATTCAGGTGTGCTTTGGATGGAGAAATACTTAGATATGTGGGTGAAGCTTATCCAAAAGGAGTTTGCTCGGTGTACTGTGGGAATGGTAAAGATGTGGAGGGCCCAGGTTCTGACTTTGAGCTTGTAGTAGTGATTTCAGCTGCGAGATATAGCCCACAAAATTTCTGCAATGGTAGTTGGCGTTCAGTGTGGAGCATTGAGTTCAAAGATGAAATGCAAGTGCTGGAATTAAAAGGCAAACTGCAGGTGGGTGCACATTATTTTGAGGAGGGAAATGTGCAGCTAGATACAAACCATGAATGCAAAGATTCAACAATTTTTCAGTCCTCTGAAGATTCTGCAATTACCATAGGCAACATCATAAGGCAACATGAGGCAGAATACTTAGCATCTCTTGAGGCATCCTATTCAAACTTGCCTGATACCACTTTTAAGGATCTTCGTAGAAAGCTTCCAGTTACTCGCACCCTATTTCCATGGCATAGCACCTTACAGTTCAGCTTGACAAGAGATATCACAAAAGAACTTGGCATTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F-actin_cap_A

Protein Analysis

305

Amino Acids

34.07

Weight (kDa)

4.54

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-actin_cap_A PF01267 18 - 295 3.9e-79 F-actin capping protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 607
Acc36I ACCTGC 1 cut(s) 607
AciI CCGC 3 cut(s) 5, 116, 333
AclWI GGATC 2 cut(s) 263, 816
AcsI RAATTY 2 cut(s) 371, 532
AcuI CTGAAG 1 cut(s) 723
AfaI GTAC 4 cut(s) 120, 140, 319, 446
AgsI TTSAA 3 cut(s) 577, 684, 783
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 2 cut(s) 272, 475
AjuI GAANNNNNNNTTGG 1 cut(s) 888
AluBI AGCT 8 cut(s) 25, 247, 419, 493, 512, 655, 823, 873
AluI AGCT 8 cut(s) 25, 247, 419, 493, 512, 655, 823, 873
Alw21I GWGCWC 2 cut(s) 249, 628
Alw26I GTCTC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 2 cut(s) 263, 816
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 1 cut(s) 472
ApaI GGGCCC 1 cut(s) 476
ApaLI GTGCAC 1 cut(s) 624
ApeKI GCWGC 2 cut(s) 512, 652
ApoI RAATTY 2 cut(s) 371, 532
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 472, 473
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 425
BaeGI GKGCMC 2 cut(s) 476, 628
BanII GRGCYC 2 cut(s) 249, 476
Bbv12I GWGCWC 2 cut(s) 249, 628
BbvI GCAGC 2 cut(s) 499, 664
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 2 cut(s) 274, 477
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 207, 656
BfmI CTRYAG 1 cut(s) 614
BfoI RGCGCY 1 cut(s) 152
BfuAI ACCTGC 1 cut(s) 607
BisI GCNGC 2 cut(s) 513, 653
BlsI GCNGC 2 cut(s) 514, 654
Bme1390I CCNGG 3 cut(s) 81, 274, 477
BmgBI CACGTC 1 cut(s) 325
BmgT120I GGNCC 2 cut(s) 472, 473
BmiI GGNNCC 2 cut(s) 62, 474
BmrFI CCNGG 3 cut(s) 81, 274, 477
BmsI GCATC 2 cut(s) 770, 782
BpuEI CTTGAG 1 cut(s) 788
BpuMI CCSGG 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 3 cut(s) 272, 475, 848
Bse1I ACTGG 1 cut(s) 827
Bse3DI GCAATG 1 cut(s) 547
BseBI CCWGG 2 cut(s) 274, 477
BseDI CCNNGG 3 cut(s) 272, 475, 848
BseGI GGATG 3 cut(s) 346, 394, 773
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 2 cut(s) 249, 262
BseNI ACTGG 1 cut(s) 827
BseRI GAGGAG 3 cut(s) 56, 66, 653
BseSI GKGCMC 2 cut(s) 476, 628
BseXI GCAGC 2 cut(s) 499, 664
BsgI GTGCAG 1 cut(s) 671
BshFI GGCC 1 cut(s) 474
BsiHKAI GWGCWC 2 cut(s) 249, 628
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 268
BsmAI GTCTC 1 cut(s) 322
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 677
BsnI GGCC 1 cut(s) 474
Bso31I GGTCTC 1 cut(s) 322
Bsp120I GGGCCC 1 cut(s) 472
Bsp1286I GDGCHC 3 cut(s) 249, 476, 628
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 2 cut(s) 268, 808
Bsp19I CCATGG 1 cut(s) 848
BspACI CCGC 3 cut(s) 5, 116, 333
BspANI GGCC 1 cut(s) 474
BspCNI CTCAG 2 cut(s) 250, 261
BspLI GGNNCC 2 cut(s) 62, 474
BspMAI CTGCAG 1 cut(s) 618
BspMI ACCTGC 1 cut(s) 607
BspPI GGATC 2 cut(s) 263, 816
BspTNI GGTCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 547
BsrGI TGTACA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 827
BssECI CCNNGG 3 cut(s) 272, 475, 848
BssMI GATC 2 cut(s) 268, 808
BssT1I CCWWGG 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 274, 477
Bst4CI ACNGT 2 cut(s) 449, 867
Bst6I CTCTTC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 317
BstDEI CTNAG 4 cut(s) 248, 258, 401, 757
BstDSI CCRYGG 1 cut(s) 848
BstF5I GGATG 3 cut(s) 346, 394, 773
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 271, 811
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 2 cut(s) 268, 808
BstMWI GCNNNNNNNGC 2 cut(s) 202, 287
BstNI CCWGG 2 cut(s) 274, 477
BstSCI CCNGG 3 cut(s) 79, 272, 475
BstSFI CTRYAG 1 cut(s) 614
BstSLI GKGCMC 2 cut(s) 476, 628
BstV1I GCAGC 2 cut(s) 499, 664
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
BsuRI GGCC 1 cut(s) 474
BtgI CCRYGG 1 cut(s) 848
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 3 cut(s) 346, 394, 773
BtsIMutI CAGTG 2 cut(s) 256, 564
BveI ACCTGC 1 cut(s) 607
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 472, 473
Csp6I GTAC 4 cut(s) 119, 139, 318, 445
CviAII CATG 4 cut(s) 284, 668, 743, 849
CviQI GTAC 4 cut(s) 119, 139, 318, 445
DdeI CTNAG 4 cut(s) 248, 258, 401, 757
DpnI GATC 2 cut(s) 270, 810
DpnII GATC 2 cut(s) 268, 808
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 848
Eco24I GRGCYC 2 cut(s) 249, 476
Eco31I GGTCTC 1 cut(s) 322
Eco32I GATATC 1 cut(s) 886
Eco53kI GAGCTC 1 cut(s) 247
Eco57I CTGAAG 1 cut(s) 723
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 272, 475
EcoRV GATATC 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 848
EcoT38I GRGCYC 2 cut(s) 249, 476
ErhI CCWWGG 1 cut(s) 848
FaeI CATG 4 cut(s) 287, 671, 746, 852
FaqI GGGAC 1 cut(s) 268
FatI CATG 4 cut(s) 283, 667, 742, 848
FauI CCCGC 1 cut(s) 340
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 513, 653
FokI GGATG 3 cut(s) 353, 401, 760
FriOI GRGCYC 2 cut(s) 249, 476
Fsp4HI GCNGC 2 cut(s) 513, 653
FspBI CTAG 2 cut(s) 207, 656
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 513, 653
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 474
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 151
Hin1II CATG 4 cut(s) 287, 671, 746, 852
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HindIII AAGCTT 2 cut(s) 417, 821
HinfI GANTC 3 cut(s) 17, 680, 707
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 3 cut(s) 298, 445, 626
Hpy188I TCNGA 4 cut(s) 22, 157, 484, 703
Hpy188III TCNNGA 2 cut(s) 266, 767
Hpy8I GTNNAC 3 cut(s) 298, 445, 626
Hpy99I CGWCG 3 cut(s) 101, 131, 134
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 449, 867
HpyCH4IV ACGT 2 cut(s) 132, 324
HpyCH4V TGCA 8 cut(s) 359, 540, 589, 616, 626, 652, 675, 713
HpyF10VI GCNNNNNNNGC 2 cut(s) 202, 287
HpyF3I CTNAG 4 cut(s) 248, 258, 401, 757
HpySE526I ACGT 2 cut(s) 132, 324
Hsp92II CATG 4 cut(s) 287, 671, 746, 852
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 2 cut(s) 268, 808
LmnI GCTCC 1 cut(s) 564
Lsp1109I GCAGC 2 cut(s) 499, 664
LweI GCATC 2 cut(s) 770, 782
MaeI CTAG 2 cut(s) 207, 656
MaeII ACGT 2 cut(s) 132, 324
MaeIII GTNAC 2 cut(s) 229, 829
MalI GATC 2 cut(s) 270, 810
MboI GATC 2 cut(s) 268, 808
MboII GAAGA 6 cut(s) 26, 52, 116, 155, 716, 803
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 3 cut(s) 249, 476, 628
MluCI AATT 7 cut(s) 92, 213, 371, 532, 599, 687, 714
MseI TTAA 2 cut(s) 602, 804
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 3 cut(s) 81, 274, 477
Mva1269I GAATGC 1 cut(s) 677
MvaI CCWGG 2 cut(s) 274, 477
MwoI GCNNNNNNNGC 2 cut(s) 202, 287
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 848
NdeI CATATG 1 cut(s) 361
NdeII GATC 2 cut(s) 268, 808
NlaIII CATG 4 cut(s) 287, 671, 746, 852
NlaIV GGNNCC 2 cut(s) 62, 474
PaqCI CACCTGC 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 677
PfeI GAWTC 3 cut(s) 17, 680, 707
PkrI GCNGC 2 cut(s) 514, 654
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 2 cut(s) 272, 475
PspGI CCWGG 2 cut(s) 272, 475
PspN4I GGNNCC 2 cut(s) 62, 474
PspOMI GGGCCC 1 cut(s) 472
PspPI GGNCC 2 cut(s) 472, 473
PsrI GAACNNNNNNTAC 2 cut(s) 538, 570
PstI CTGCAG 1 cut(s) 618
PstNI CAGNNNCTG 1 cut(s) 482
PsuI RGATCY 1 cut(s) 808
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 4 cut(s) 120, 140, 319, 446
RsaNI GTAC 4 cut(s) 119, 139, 318, 445
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 2 cut(s) 602, 804
SatI GCNGC 2 cut(s) 513, 653
Sau3AI GATC 2 cut(s) 268, 808
Sau96I GGNCC 2 cut(s) 472, 473
ScrFI CCNGG 3 cut(s) 81, 274, 477
SduI GDGCHC 3 cut(s) 249, 476, 628
SfaNI GCATC 2 cut(s) 770, 782
SfcI CTRYAG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 767
SmoI CTYRAG 1 cut(s) 767
Sse9I AATT 7 cut(s) 92, 213, 371, 532, 599, 687, 714
SsiI CCGC 3 cut(s) 5, 116, 333
SspMI CTAG 2 cut(s) 207, 656
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 3 cut(s) 79, 272, 475
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 2 cut(s) 449, 867
TaiI ACGT 2 cut(s) 135, 327
TasI AATT 7 cut(s) 92, 213, 371, 532, 599, 687, 714
TatI WGTACW 2 cut(s) 317, 444
TfiI GAWTC 3 cut(s) 17, 680, 707
Tru1I TTAA 2 cut(s) 602, 804
Tru9I TTAA 2 cut(s) 602, 804
TscAI CASTG 2 cut(s) 256, 564
TseI GCWGC 2 cut(s) 512, 652
TspDTI ATGAA 3 cut(s) 342, 597, 684
TspGWI ACGGA 1 cut(s) 255
TspRI CASTG 2 cut(s) 256, 564
VneI GTGCAC 1 cut(s) 624
XapI RAATTY 2 cut(s) 371, 532
XspI CTAG 2 cut(s) 207, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.