RchiOBHm_Chr1g0322221

F-actin-capping proteins bind in a Ca(2 )-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0008545
Physical Location & Seq
Forward (+)
9640274 .. 9642026
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55224

Sequence Viewer

Length: 537 bp
ATGTTTCTGTGTATTTGGGTAGGGTTGTGTAATTCCTTACTCTTTTGTTTCAGGTGTGCTTTGGATGGAGAAATACTTAGATATGTGGGTGAAGCTTATCCAAAAGGAGTTTGCTCAGTGTATTGTGGGAATGGTAAAGATGCAGAGGGCCCAGGATCTGACTTTGAGCTCGTGGTAGTGATTTCAGTTGCTAGACATAGCCCACAAAATTTCTGGTTGTGGAGCATTGAGTTCAAAGATGAAGTACAAATGCTGGAATTAAAAGGCAAACTGCAGGTGGGTGCCCACTATTTTGAGAAGGGGAATGTGCAGTTAGATGCAAAACATGAATGCAAAGATTCAACAATTTTTCAGTCCTCTGAAGATTCTGCAATTACCATAGGCAACATTATAAGGCAACATGAGGCAGAATACTTGGCATCTCTTGAGGATCTTCGTAGAAAGCTTCCAGTTACTCGCACCCTATTTCCATGGCAGAATACTTTACAGTTTAGCTTGACAAGAGATATCACAAAAGAACTTGGCATTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F-actin_cap_A

Protein Analysis

178

Amino Acids

20.17

Weight (kDa)

5.59

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-actin_cap_A PF01267 17 - 169 1.1e-30 F-actin capping protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AarI CACCTGC 1 cut(s) 265
Acc36I ACCTGC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 281
AclWI GGATC 2 cut(s) 163, 438
AcsI RAATTY 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 246
AgsI TTSAA 2 cut(s) 235, 342
AjnI CCWGG 1 cut(s) 151
AjuI GAANNNNNNNTTGG 1 cut(s) 510
AluBI AGCT 4 cut(s) 95, 169, 445, 495
AluI AGCT 4 cut(s) 95, 169, 445, 495
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 2 cut(s) 163, 438
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 1 cut(s) 148
ApaI GGGCCC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 148, 149
AsuHPI GGTGA 1 cut(s) 101
BaeGI GKGCMC 2 cut(s) 152, 286
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 152, 171
BauI CACGAG 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 171
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 153
BmgT120I GGNCC 2 cut(s) 148, 149
BmiI GGNNCC 2 cut(s) 150, 283
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 130, 307, 428
BpuEI CTTGAG 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 151, 470
Bse1I ACTGG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 151, 470
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 449
BseSI GKGCMC 2 cut(s) 152, 286
BsgI GTGCAG 1 cut(s) 329
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 1 cut(s) 150
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 3 cut(s) 152, 171, 286
Bsp143I GATC 2 cut(s) 155, 430
Bsp19I CCATGG 1 cut(s) 470
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 150, 283
BspMAI CTGCAG 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 2 cut(s) 163, 438
BspT107I GGYRCC 1 cut(s) 281
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 2 cut(s) 151, 470
BssMI GATC 2 cut(s) 155, 430
BssSI CACGAG 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 489
BstDEI CTNAG 2 cut(s) 77, 115
BstDSI CCRYGG 1 cut(s) 470
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 2 cut(s) 158, 433
BstMBI GATC 2 cut(s) 155, 430
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 2 cut(s) 152, 286
BstX2I RGATCY 2 cut(s) 155, 430
BstYI RGATCY 2 cut(s) 155, 430
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 470
BtsCI GGATG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 265
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 148, 149
Csp6I GTAC 1 cut(s) 245
CviAII CATG 3 cut(s) 326, 401, 471
CviJI RGCY 6 cut(s) 95, 150, 169, 201, 445, 495
CviKI_1 RGCY 6 cut(s) 95, 150, 169, 201, 445, 495
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 2 cut(s) 77, 115
DpnI GATC 2 cut(s) 157, 432
DpnII GATC 2 cut(s) 155, 430
Ecl136II GAGCTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 470
Eco24I GRGCYC 2 cut(s) 152, 171
Eco32I GATATC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 470
EcoT38I GRGCYC 2 cut(s) 152, 171
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 3 cut(s) 329, 404, 474
FaiI YATR 7 cut(s) 84, 198, 327, 380, 392, 402, 472
FatI CATG 3 cut(s) 325, 400, 470
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 2 cut(s) 152, 171
FspBI CTAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 150
Hin1II CATG 3 cut(s) 329, 404, 474
HindIII AAGCTT 2 cut(s) 93, 443
HinfI GANTC 2 cut(s) 338, 365
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 160, 361
Hpy188III TCNNGA 1 cut(s) 425
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 489
HpyCH4V TGCA 6 cut(s) 143, 274, 310, 320, 333, 371
HpyF3I CTNAG 2 cut(s) 77, 115
Hsp92II CATG 3 cut(s) 329, 404, 474
Kzo9I GATC 2 cut(s) 155, 430
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 7 cut(s) 37, 138, 165, 199, 239, 260, 462
LweI GCATC 3 cut(s) 130, 307, 428
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 157, 432
MboI GATC 2 cut(s) 155, 430
MboII GAAGA 2 cut(s) 374, 425
MflI RGATCY 2 cut(s) 155, 430
MhlI GDGCHC 3 cut(s) 152, 171, 286
MluCI AATT 5 cut(s) 31, 208, 257, 345, 372
MnlI CCTC 4 cut(s) 139, 367, 397, 421
MseI TTAA 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 1 cut(s) 153
NcoI CCATGG 1 cut(s) 470
NdeII GATC 2 cut(s) 155, 430
NlaIII CATG 3 cut(s) 329, 404, 474
NlaIV GGNNCC 2 cut(s) 150, 283
PaqCI CACCTGC 1 cut(s) 265
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 338, 365
PsiI TTATAA 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 150, 283
PspOMI GGGCCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 148, 149
PstI CTGCAG 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 155, 430
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 260
Sau3AI GATC 2 cut(s) 155, 430
Sau96I GGNCC 2 cut(s) 148, 149
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 3 cut(s) 152, 171, 286
SetI ASST 6 cut(s) 56, 97, 171, 279, 447, 497
SfaNI GCATC 3 cut(s) 130, 307, 428
SfcI CTRYAG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 5 cut(s) 31, 208, 257, 345, 372
SspMI CTAG 1 cut(s) 192
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 1 cut(s) 489
TasI AATT 5 cut(s) 31, 208, 257, 345, 372
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 2 cut(s) 338, 365
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 255, 342
TspRI CASTG 1 cut(s) 123
XapI RAATTY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.