RchiOBHm_Chr3g0455751

F-actin-capping proteins bind in a Ca(2 )-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0008545
Physical Location & Seq
Forward (+)
5366252 .. 5370377
4126 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42267

Sequence Viewer

Length: 1068 bp
ATGTCCACCCCCCTAAAACTCAACGTCAAGATTCTGACAGTTCCAGCACAGAAACACCTTCCTCTCTTCTCTCCCCCTGAATATTCTTCTGCCTCCGCCACTCCGTTTTGGCCCCATTCAAATCAATCTCAGAGAAATCCTACTTCGTTTCAAATGGCGGACGAAGAAGAATCGGAGCTAAGCGAGAAGCAGAAGATTGATATAGCCAAGTGGTTCCTCCTCAACTCTCCTCCCGGTGAAATCCAATTCGTCGCCGAAGATGTGAAGGCGGTAGTCAACGACGACGTTTTGTACGAAGAAGCAGCTTCAGTGGCTTTTCCACTGTATAACAAATCACACATGATTTCGCTGGAAATGCCTGGTGGAATTGGAGATGTTCTAGTTACATCTTTCGGAGAGCTCCGTGAGAATGAGTACCTTGATCCCAGGACTGCTCATGTTGCCGTAGTTGACCATATCAAACAGGTTTGTCCAGACGTGAGACCTGCATTGGATGAGGAACTTCCTTCCGCATATGTTGAGGAATTCAGGTGTGCTTTGGATGGAGAAATACTTAGATATGTGGGTGAAGCTTATCCAAAAGGAGTCTGCTCAGTGTACTGTGGGAATGGTAAAGATGCAGAGGGCCCAGGATCTGACTTTGAGCTCGTGGTAGTGATTTCAGCTGCTAGACACAGCCCACAAAATTTCTGCAATGGTAGTTGGCGTTCAGTGTGGAGTATTGAGTTCAAAGATGAAGTACAAGTGCTGGAATTAAAAGGCAAACTGCAGGTGGGTGCCCACTATTTTGAGGAGGGGAATGTGCAGTTAGATGCAAAACATGAATGCAAAGATTCAACAATTTTTCAGTCCTCTGAAGATTCTGCAATTACCATAGGCAACATTATAAGGCAACACGAGGCAGAATACTTGGCATCTCTTGAGGCATCCTATTCAAACTTGCCCGATACCACTTTTAAGGATCTTCGTAGAAAGCTTCCAGTTACTCGCACCCTATTTCCATGGCAGAATACTTTACAGTTTAGCTTGACAAGAGATATCACAAAAGAACTTGGCATTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
F-actin_cap_A

Protein Analysis

355

Amino Acids

39.69

Weight (kDa)

4.87

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-actin_cap_A PF01267 69 - 346 3.9e-77 F-actin capping protein alpha subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AarI CACCTGC 1 cut(s) 760
Acc36I ACCTGC 2 cut(s) 493, 760
AccB1I GGYRCC 1 cut(s) 776
AciI CCGC 4 cut(s) 96, 158, 269, 510
AclWI GGATC 3 cut(s) 416, 640, 969
AcsI RAATTY 2 cut(s) 524, 685
AcuI CTGAAG 2 cut(s) 291, 876
AfaI GTAC 4 cut(s) 293, 416, 599, 741
AgsI TTSAA 5 cut(s) 120, 152, 730, 837, 936
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 3 cut(s) 358, 425, 628
AjuI GAANNNNNNNTTGG 1 cut(s) 1041
AluBI AGCT 8 cut(s) 178, 305, 400, 572, 646, 665, 976, 1026
AluI AGCT 8 cut(s) 178, 305, 400, 572, 646, 665, 976, 1026
Alw21I GWGCWC 2 cut(s) 402, 648
Alw26I GTCTC 1 cut(s) 475
AlwI GGATC 3 cut(s) 416, 640, 969
AlwNI CAGNNNCTG 1 cut(s) 635
AoxI GGCC 2 cut(s) 110, 625
ApaI GGGCCC 1 cut(s) 629
ApeKI GCWGC 2 cut(s) 302, 665
ApoI RAATTY 2 cut(s) 524, 685
AspS9I GGNCC 3 cut(s) 111, 625, 626
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 248, 578
BaeGI GKGCMC 2 cut(s) 629, 781
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 3 cut(s) 402, 629, 648
BauI CACGAG 2 cut(s) 647, 896
Bbv12I GWGCWC 2 cut(s) 402, 648
BbvI GCAGC 2 cut(s) 314, 652
BccI CCATC 1 cut(s) 536
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 3 cut(s) 360, 427, 630
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 2 cut(s) 380, 669
BfmI CTRYAG 1 cut(s) 767
BfuAI ACCTGC 2 cut(s) 493, 760
BisI GCNGC 2 cut(s) 303, 666
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 2 cut(s) 304, 667
Bme1390I CCNGG 4 cut(s) 234, 360, 427, 630
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 3 cut(s) 111, 625, 626
BmiI GGNNCC 4 cut(s) 113, 215, 627, 778
BmrFI CCNGG 4 cut(s) 234, 360, 427, 630
BmsI GCATC 4 cut(s) 607, 802, 923, 935
Bpu1102I GCTNAGC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 425, 628, 1001
Bse1I ACTGG 1 cut(s) 980
Bse3DI GCAATG 1 cut(s) 700
BseBI CCWGG 3 cut(s) 360, 427, 630
BseDI CCNNGG 3 cut(s) 425, 628, 1001
BseGI GGATG 3 cut(s) 499, 547, 926
BseMI GCAATG 1 cut(s) 700
BseMII CTCAG 2 cut(s) 143, 606
BseNI ACTGG 1 cut(s) 980
BseRI GAGGAG 3 cut(s) 209, 219, 806
BseSI GKGCMC 2 cut(s) 629, 781
BseXI GCAGC 2 cut(s) 314, 652
BsgI GTGCAG 1 cut(s) 824
BshFI GGCC 2 cut(s) 112, 627
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 2 cut(s) 402, 648
BsiSI CCGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 475
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 2 cut(s) 112, 627
Bso31I GGTCTC 1 cut(s) 475
Bsp120I GGGCCC 1 cut(s) 625
Bsp1286I GDGCHC 4 cut(s) 402, 629, 648, 781
Bsp143I GATC 3 cut(s) 421, 632, 961
Bsp1720I GCTNAGC 1 cut(s) 179
Bsp19I CCATGG 1 cut(s) 1001
BspACI CCGC 4 cut(s) 96, 158, 269, 510
BspANI GGCC 2 cut(s) 112, 627
BspCNI CTCAG 2 cut(s) 142, 605
BspLI GGNNCC 4 cut(s) 113, 215, 627, 778
BspMAI CTGCAG 1 cut(s) 771
BspMI ACCTGC 2 cut(s) 493, 760
BspPI GGATC 3 cut(s) 416, 640, 969
BspT107I GGYRCC 1 cut(s) 776
BspTNI GGTCTC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 700
BsrI ACTGG 1 cut(s) 980
BssECI CCNNGG 3 cut(s) 425, 628, 1001
BssMI GATC 3 cut(s) 421, 632, 961
BssSI CACGAG 2 cut(s) 647, 896
BssT1I CCWWGG 1 cut(s) 1001
Bst2BI CACGAG 2 cut(s) 647, 896
Bst2UI CCWGG 3 cut(s) 360, 427, 630
Bst4CI ACNGT 4 cut(s) 40, 324, 602, 1020
Bst6I CTCTTC 1 cut(s) 71
BstDEI CTNAG 4 cut(s) 129, 179, 554, 592
BstDSI CCRYGG 1 cut(s) 1001
BstF5I GGATG 3 cut(s) 499, 547, 926
BstKTI GATC 3 cut(s) 424, 635, 964
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 3 cut(s) 421, 632, 961
BstMWI GCNNNNNNNGC 3 cut(s) 311, 355, 440
BstNI CCWGG 3 cut(s) 360, 427, 630
BstSCI CCNGG 4 cut(s) 232, 358, 425, 628
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 2 cut(s) 629, 781
BstV1I GCAGC 2 cut(s) 314, 652
BstX2I RGATCY 2 cut(s) 632, 961
BstYI RGATCY 2 cut(s) 632, 961
BsuRI GGCC 2 cut(s) 112, 627
BtgI CCRYGG 1 cut(s) 1001
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 3 cut(s) 499, 547, 926
BtsIMutI CAGTG 4 cut(s) 315, 320, 600, 717
BveI ACCTGC 2 cut(s) 493, 760
CaiI CAGNNNCTG 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 111, 625, 626
Csp6I GTAC 4 cut(s) 292, 415, 598, 740
CviAII CATG 4 cut(s) 340, 437, 821, 1002
CviQI GTAC 4 cut(s) 292, 415, 598, 740
DdeI CTNAG 4 cut(s) 129, 179, 554, 592
DpnI GATC 3 cut(s) 423, 634, 963
DpnII GATC 3 cut(s) 421, 632, 961
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 2 cut(s) 85, 173
Ecl136II GAGCTC 2 cut(s) 400, 646
Eco130I CCWWGG 1 cut(s) 1001
Eco24I GRGCYC 3 cut(s) 402, 629, 648
Eco31I GGTCTC 1 cut(s) 475
Eco32I GATATC 1 cut(s) 1039
Eco53kI GAGCTC 2 cut(s) 400, 646
Eco57I CTGAAG 2 cut(s) 291, 876
EcoICRI GAGCTC 2 cut(s) 400, 646
EcoO109I RGGNCCY 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 524
EcoRII CCWGG 3 cut(s) 358, 425, 628
EcoRV GATATC 1 cut(s) 1039
EcoT14I CCWWGG 1 cut(s) 1001
EcoT38I GRGCYC 3 cut(s) 402, 629, 648
ErhI CCWWGG 1 cut(s) 1001
FaeI CATG 4 cut(s) 343, 440, 824, 1005
FatI CATG 4 cut(s) 339, 436, 820, 1001
FauNDI CATATG 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 303, 666
FokI GGATG 3 cut(s) 506, 554, 913
FriOI GRGCYC 3 cut(s) 402, 629, 648
Fsp4HI GCNGC 2 cut(s) 303, 666
FspBI CTAG 2 cut(s) 380, 669
GluI GCNGC 2 cut(s) 303, 666
HaeIII GGCC 2 cut(s) 112, 627
HapII CCGG 1 cut(s) 234
Hin1II CATG 4 cut(s) 343, 440, 824, 1005
HincII GTYRAC 2 cut(s) 277, 451
HindII GTYRAC 2 cut(s) 277, 451
HindIII AAGCTT 2 cut(s) 570, 974
HinfI GANTC 5 cut(s) 31, 170, 585, 833, 860
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 248, 578
Hpy166II GTNNAC 4 cut(s) 6, 277, 451, 598
Hpy188I TCNGA 6 cut(s) 36, 132, 175, 395, 637, 856
Hpy188III TCNNGA 3 cut(s) 28, 473, 920
Hpy8I GTNNAC 4 cut(s) 6, 277, 451, 598
Hpy99I CGWCG 3 cut(s) 254, 284, 287
HpyAV CCTTC 3 cut(s) 68, 259, 516
HpyCH4III ACNGT 4 cut(s) 40, 324, 602, 1020
HpyCH4IV ACGT 3 cut(s) 24, 285, 477
HpyCH4V TGCA 8 cut(s) 488, 620, 693, 769, 805, 815, 828, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 355, 440
HpyF3I CTNAG 4 cut(s) 129, 179, 554, 592
HpySE526I ACGT 3 cut(s) 24, 285, 477
Hsp92II CATG 4 cut(s) 343, 440, 824, 1005
Kzo9I GATC 3 cut(s) 421, 632, 961
LmnI GCTCC 2 cut(s) 175, 405
Lsp1109I GCAGC 2 cut(s) 314, 652
LweI GCATC 4 cut(s) 607, 802, 923, 935
MaeI CTAG 2 cut(s) 380, 669
MaeII ACGT 3 cut(s) 24, 285, 477
MaeIII GTNAC 2 cut(s) 382, 982
MalI GATC 3 cut(s) 423, 634, 963
MboI GATC 3 cut(s) 421, 632, 961
MboII GAAGA 9 cut(s) 58, 78, 176, 179, 205, 269, 308, 869, 956
MflI RGATCY 2 cut(s) 632, 961
MhlI GDGCHC 4 cut(s) 402, 629, 648, 781
MluCI AATT 7 cut(s) 245, 366, 524, 685, 752, 840, 867
MlyI GAGTC 1 cut(s) 594
MseI TTAA 2 cut(s) 755, 957
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 4 cut(s) 234, 360, 427, 630
Mva1269I GAATGC 1 cut(s) 830
MvaI CCWGG 3 cut(s) 360, 427, 630
MwoI GCNNNNNNNGC 3 cut(s) 311, 355, 440
NciI CCSGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 1001
NdeI CATATG 1 cut(s) 514
NdeII GATC 3 cut(s) 421, 632, 961
NlaIII CATG 4 cut(s) 343, 440, 824, 1005
NlaIV GGNNCC 4 cut(s) 113, 215, 627, 778
PaqCI CACCTGC 1 cut(s) 760
PcsI WCGNNNNNNNCGW 1 cut(s) 291
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 4 cut(s) 31, 170, 833, 860
PkrI GCNGC 2 cut(s) 304, 667
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
PsiI TTATAA 1 cut(s) 887
Psp124BI GAGCTC 2 cut(s) 402, 648
Psp6I CCWGG 3 cut(s) 358, 425, 628
PspGI CCWGG 3 cut(s) 358, 425, 628
PspN4I GGNNCC 4 cut(s) 113, 215, 627, 778
PspOMI GGGCCC 1 cut(s) 625
PspPI GGNCC 3 cut(s) 111, 625, 626
PsrI GAACNNNNNNTAC 2 cut(s) 691, 723
PstI CTGCAG 1 cut(s) 771
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 632, 961
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 4 cut(s) 293, 416, 599, 741
RsaNI GTAC 4 cut(s) 292, 415, 598, 740
SacI GAGCTC 2 cut(s) 402, 648
SaqAI TTAA 2 cut(s) 755, 957
SatI GCNGC 2 cut(s) 303, 666
Sau3AI GATC 3 cut(s) 421, 632, 961
Sau96I GGNCC 3 cut(s) 111, 625, 626
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 4 cut(s) 234, 360, 427, 630
SduI GDGCHC 4 cut(s) 402, 629, 648, 781
SfaNI GCATC 4 cut(s) 607, 802, 923, 935
SfcI CTRYAG 1 cut(s) 767
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 7 cut(s) 245, 366, 524, 685, 752, 840, 867
SsiI CCGC 4 cut(s) 96, 158, 269, 510
SspI AATATT 1 cut(s) 83
SspMI CTAG 2 cut(s) 380, 669
SstI GAGCTC 2 cut(s) 402, 648
StyD4I CCNGG 4 cut(s) 232, 358, 425, 628
StyI CCWWGG 1 cut(s) 1001
TaaI ACNGT 4 cut(s) 40, 324, 602, 1020
TaiI ACGT 3 cut(s) 27, 288, 480
TasI AATT 7 cut(s) 245, 366, 524, 685, 752, 840, 867
TatI WGTACW 2 cut(s) 597, 739
TfiI GAWTC 4 cut(s) 31, 170, 833, 860
Tru1I TTAA 2 cut(s) 755, 957
Tru9I TTAA 2 cut(s) 755, 957
TscAI CASTG 4 cut(s) 315, 327, 600, 717
TseI GCWGC 2 cut(s) 302, 665
TspDTI ATGAA 2 cut(s) 750, 837
TspGWI ACGGA 2 cut(s) 93, 392
TspRI CASTG 4 cut(s) 315, 327, 600, 717
XapI RAATTY 2 cut(s) 524, 685
XspI CTAG 2 cut(s) 380, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.