Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Forward (+)

3891552 .. 3896942

Gene Structure 5391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06650.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGTAGCCGATCGAGTCGTACTATCTACGTGGGCAATCTGCCTGGAGATATTCGTATGAGAGAGATTGAAGATTTATTCATCAAGTATGGACCGATTGTTGACATTGATCTCAAGATCCCCCCCAGACCACCAGGTTATGCTTTTATTGAGTTTGAAGATCCTCGTGATGCTGATGATGCGATTTATGGCCGGGATGGTTACAACTTTGATGGGTATCGCTTACGGGTTGAATTAGCACATGGCAGATGTGGATATTCATCATCAGACCGATTCAGCAATTATAGTCGTAGTAGTAGTAGCCGTGGAGCTCCCCGCCGTTCTGAATATCGTGTGCTGGTCACTGGGTTGCCTGCTTCTGCTTCATGGCAGGATCTGAAAGATCACATGCGTCAAGCTGGAGATGTCTGTTTTTCGCAAGTGTTCCGTGACCGTGGAGGCATGACAGGAGTTGTAGACTACACAAATTACGATGACATGAAATATGCAATCAGGAAATTGGATGATTCTGAATTTAGAAATGCTTTTTCTCGGTCCTACATACGGGTCGAGGAATATGATTCTAGTCGTGGGTACTCCAGGAGCCCCAGTTATGGCTCGAGACAAAGCTACTCTAGAAGTCCCAGTCGTAGTCCATATGTGTCGAGAAGTCGTAGTCGCAGTCGGAGTCGTAGCTTTGGGGGCCAGGGCAGAAGCCTTTCACCATATGTGGAATATACGCACCGCTCTCCGAGGTCTGCGTCACGTTCCCCTGCAAGATCGGTTCTTCTGGAGGTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

261

Amino Acids

29.7

Weight (kDa)

9.69

Isoelectric Point (pI)

83.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	2.9e-17	RNA recognition motif
RRM_1	PF00076	112 - 174	2e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	726
AccI	GTMKAC	1 cut(s)	456
AciI	CCGC	2 cut(s)	316, 724
AclWI	GGATC	3 cut(s)	112, 155, 381
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	512
AfaI	GTAC	2 cut(s)	22, 575
AfiI	CCNNNNNNNGG	2 cut(s)	543, 593
AgsI	TTSAA	3 cut(s)	71, 158, 233
AjnI	CCWGG	4 cut(s)	43, 133, 578, 684
AluBI	AGCT	4 cut(s)	311, 398, 609, 675
AluI	AGCT	4 cut(s)	311, 398, 609, 675
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	595
AlwI	GGATC	3 cut(s)	112, 155, 381
AlwNI	CAGNNNCTG	1 cut(s)	376
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	2 cut(s)	190, 682
ApoI	RAATTY	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	697
AspS9I	GGNCC	3 cut(s)	92, 534, 682
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	693
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	2 cut(s)	92, 534
BanII	GRGCYC	2 cut(s)	313, 587
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	313
BccI	CCATC	2 cut(s)	191, 206
BceAI	ACGGC	2 cut(s)	288, 303
BciT130I	CCWGG	4 cut(s)	45, 135, 580, 686
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	595
BfaI	CTAG	3 cut(s)	564, 615, 781
Bme1390I	CCNGG	5 cut(s)	45, 135, 194, 580, 686
Bme18I	GGWCC	2 cut(s)	92, 534
BmeT110I	CYCGRG	1 cut(s)	598
BmgT120I	GGNCC	3 cut(s)	92, 534, 682
BmiI	GGNNCC	2 cut(s)	584, 683
BmrFI	CCNGG	5 cut(s)	45, 135, 194, 580, 686
BmrI	ACTGGG	3 cut(s)	354, 582, 618
BmsI	GCATC	2 cut(s)	160, 169
BmuI	ACTGGG	3 cut(s)	354, 582, 618
BpmI	CTGGAG	3 cut(s)	66, 420, 562
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	31
BsaBI	GATNNNNATC	2 cut(s)	216, 259
BsaJI	CCNNGG	4 cut(s)	304, 433, 685, 731
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	543, 593
Bse1I	ACTGG	3 cut(s)	349, 588, 624
Bse8I	GATNNNNATC	2 cut(s)	216, 259
BseBI	CCWGG	4 cut(s)	45, 135, 580, 686
BseDI	CCNNGG	4 cut(s)	304, 433, 685, 731
BseGI	GGATG	2 cut(s)	202, 508
BseJI	GATNNNNATC	2 cut(s)	216, 259
BseLI	CCNNNNNNNGG	2 cut(s)	543, 593
BseNI	ACTGG	3 cut(s)	349, 588, 624
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	192, 684
BsiEI	CGRYCG	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	543, 593
BsmAI	GTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	606
BsnI	GGCC	2 cut(s)	192, 684
BsoBI	CYCGRG	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	313, 587
Bsp143I	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
BspACI	CCGC	2 cut(s)	316, 724
BspANI	GGCC	2 cut(s)	192, 684
BspLI	GGNNCC	2 cut(s)	584, 683
BspPI	GGATC	3 cut(s)	112, 155, 381
BsrBI	CCGCTC	1 cut(s)	726
BsrI	ACTGG	3 cut(s)	349, 588, 624
BssECI	CCNNGG	4 cut(s)	304, 433, 685, 731
BssMI	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	4 cut(s)	45, 135, 580, 686
Bst4CI	ACNGT	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	354
BstDSI	CCRYGG	2 cut(s)	304, 433
BstF5I	GGATG	2 cut(s)	202, 508
BstKTI	GATC	7 cut(s)	14, 112, 120, 163, 376, 385, 761
BstMAI	GTCTC	1 cut(s)	595
BstMBI	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 681
BstNI	CCWGG	4 cut(s)	45, 135, 580, 686
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	5 cut(s)	43, 133, 192, 578, 684
BstX2I	RGATCY	3 cut(s)	117, 160, 373
BstYI	RGATCY	3 cut(s)	117, 160, 373
BsuRI	GGCC	2 cut(s)	192, 684
BtgI	CCRYGG	2 cut(s)	304, 433
BtsCI	GGATG	2 cut(s)	202, 508
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	354
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	92, 534, 682
CseI	GACGC	2 cut(s)	380, 729
CsiI	ACCWGGT	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	21, 574
CviAII	CATG	5 cut(s)	242, 366, 388, 442, 478
CviQI	GTAC	2 cut(s)	21, 574
DpnI	GATC	7 cut(s)	13, 111, 119, 162, 375, 384, 760
DpnII	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
EaeI	YGGCCR	1 cut(s)	190
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	313, 587
Eco47I	GGWCC	2 cut(s)	92, 534
Eco53kI	GAGCTC	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	311
EcoRII	CCWGG	4 cut(s)	43, 133, 578, 684
EcoT38I	GRGCYC	2 cut(s)	313, 587
FaeI	CATG	5 cut(s)	245, 369, 391, 445, 481
FaqI	GGGAC	1 cut(s)	606
FatI	CATG	5 cut(s)	241, 365, 387, 441, 477
FauI	CCCGC	1 cut(s)	323
FauNDI	CATATG	2 cut(s)	637, 706
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	2 cut(s)	209, 515
FriOI	GRGCYC	2 cut(s)	313, 587
FspBI	CTAG	3 cut(s)	564, 615, 781
GsuI	CTGGAG	3 cut(s)	66, 420, 562
HaeIII	GGCC	2 cut(s)	192, 684
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	2 cut(s)	380, 729
Hin1II	CATG	5 cut(s)	245, 369, 391, 445, 481
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	5 cut(s)	16, 273, 506, 560, 667
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	1 cut(s)	693
Hpy166II	GTNNAC	2 cut(s)	103, 457
Hpy188I	TCNGA	6 cut(s)	268, 325, 378, 511, 666, 732
Hpy188III	TCNNGA	7 cut(s)	115, 167, 493, 600, 615, 645, 770
Hpy8I	GTNNAC	2 cut(s)	103, 457
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	2 cut(s)	30, 745
HpyCH4V	TGCA	2 cut(s)	488, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 681
HpySE526I	ACGT	2 cut(s)	30, 745
Hsp92II	CATG	5 cut(s)	245, 369, 391, 445, 481
Kzo9I	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
LmnI	GCTCC	3 cut(s)	308, 316, 582
LweI	GCATC	2 cut(s)	160, 169
MabI	ACCWGGT	1 cut(s)	133
MaeI	CTAG	3 cut(s)	564, 615, 781
MaeII	ACGT	2 cut(s)	30, 745
MaeIII	GTNAC	4 cut(s)	200, 340, 428, 741
MalI	GATC	7 cut(s)	13, 111, 119, 162, 375, 384, 760
MbiI	CCGCTC	1 cut(s)	726
MboI	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
MboII	GAAGA	3 cut(s)	83, 170, 758
MflI	RGATCY	3 cut(s)	117, 160, 373
MhlI	GDGCHC	2 cut(s)	313, 587
MluCI	AATT	5 cut(s)	233, 280, 466, 497, 512
MlyI	GAGTC	2 cut(s)	25, 676
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	5 cut(s)	174, 431, 544, 726, 766
MroXI	GAANNNNTTC	1 cut(s)	697
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	5 cut(s)	45, 135, 194, 580, 686
MvaI	CCWGG	4 cut(s)	45, 135, 580, 686
MwoI	GCNNNNNNNGC	2 cut(s)	179, 681
NciI	CCSGG	1 cut(s)	194
NdeI	CATATG	2 cut(s)	637, 706
NdeII	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
NlaIII	CATG	5 cut(s)	245, 369, 391, 445, 481
NlaIV	GGNNCC	2 cut(s)	584, 683
NmuCI	GTSAC	3 cut(s)	340, 428, 741
NspI	RCATGY	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	697
PfeI	GAWTC	3 cut(s)	273, 506, 560
PfoI	TCCNGGA	1 cut(s)	578
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	2 cut(s)	24, 675
PpsI	GAGTC	2 cut(s)	24, 675
Ppu21I	YACGTR	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	313
Psp6I	CCWGG	4 cut(s)	43, 133, 578, 684
PspGI	CCWGG	4 cut(s)	43, 133, 578, 684
PspN4I	GGNNCC	2 cut(s)	584, 683
PspPI	GGNCC	3 cut(s)	92, 534, 682
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	3 cut(s)	117, 160, 373
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	22, 575
RsaNI	GTAC	2 cut(s)	21, 574
SacI	GAGCTC	1 cut(s)	313
Sau3AI	GATC	7 cut(s)	11, 109, 117, 160, 373, 382, 758
Sau96I	GGNCC	3 cut(s)	92, 534, 682
SchI	GAGTC	2 cut(s)	25, 676
ScrFI	CCNGG	5 cut(s)	45, 135, 194, 580, 686
SduI	GDGCHC	2 cut(s)	313, 587
SetI	ASST	9 cut(s)	33, 139, 313, 400, 611, 677, 737, 748, 777
SexAI	ACCWGGT	1 cut(s)	133
SfaNI	GCATC	2 cut(s)	160, 169
Sfr274I	CTCGAG	1 cut(s)	598
SinI	GGWCC	2 cut(s)	92, 534
SlaI	CTCGAG	1 cut(s)	598
SmlI	CTYRAG	2 cut(s)	113, 598
SmoI	CTYRAG	2 cut(s)	113, 598
Sse9I	AATT	5 cut(s)	233, 280, 466, 497, 512
SsiI	CCGC	2 cut(s)	316, 724
SspMI	CTAG	3 cut(s)	564, 615, 781
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	5 cut(s)	43, 133, 192, 578, 684
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	2 cut(s)	33, 748
TaqI	TCGA	4 cut(s)	14, 549, 599, 644
TaqII	GACCGA	3 cut(s)	109, 285, 522
TasI	AATT	5 cut(s)	233, 280, 466, 497, 512
TfiI	GAWTC	3 cut(s)	273, 506, 560
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	3 cut(s)	340, 428, 741
Tsp45I	GTSAC	3 cut(s)	340, 428, 741
TspDTI	ATGAA	4 cut(s)	70, 249, 354, 494
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	92, 534
XapI	RAATTY	1 cut(s)	512
XbaI	TCTAGA	1 cut(s)	614
XceI	RCATGY	1 cut(s)	391
XhoI	CTCGAG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	697
XspI	CTAG	3 cut(s)	564, 615, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.