Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Forward (+)

824819 .. 825452

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0010700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTGGGCCACGGGCCACGCTTGTCGCTGTTTAACATGATCAAGATTAGTAAAATGAACATATCATGTTCTTCATTATGCATGCGTATATTCCGATCAGGAAACCAGGAAACCGAGCACTGCCCCTGTAGGATTATCTTACTCGCTGTGTTCCTTTTCCTTTTACTGGTGTTTTATTTCGTCGAGAGCATAATCAGAAGCGAGCCAACAGATGACATAAAGATAACTGTAACTGATGCCTCCCTCACCGAGTTCAACATAACCAACTCCAACAACTACAATCTCGACCTCAACATCACCCTTCGAAATCCCAACAAGGATTTTGGCATCTACTACCGGTACAAGGCTCTAGTCGTCGCAGACTTCCGCAAGACGTCTGCTAAATTTCACCAACCAGCAAAGAATACGACTCTTCTGACGCCGTCGTTTAAACTGCAGCGGGATAATATTACTGACGATGCAGCTGCATGCGTCAGGGAAAGAGAATTACTACGACATTGTCGTGACCCTCTATCTTCCAAAGAAGTACAAGTCCGTCACCTGGTGGAAGAACGCGCGATTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

188

Amino Acids

21.62

Weight (kDa)

8.94

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	377
AccII	CGCG	2 cut(s)	555, 557
AciI	CCGC	2 cut(s)	367, 439
AcsI	RAATTY	1 cut(s)	383
AcyI	GRCGYC	2 cut(s)	374, 419
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	341, 528
AfiI	CCNNNNNNNGG	3 cut(s)	166, 343, 541
AgeI	ACCGGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	105, 540
AjuI	GAANNNNNNNTTGG	1 cut(s)	543
AluBI	AGCT	1 cut(s)	464
AluI	AGCT	1 cut(s)	464
Alw21I	GWGCWC	1 cut(s)	120
AoxI	GGCC	2 cut(s)	7, 14
ApeKI	GCWGC	3 cut(s)	436, 461, 464
ApoI	RAATTY	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	557
AspS9I	GGNCC	2 cut(s)	7, 14
AsuHPI	GGTGA	4 cut(s)	238, 289, 380, 530
AsuII	TTCGAA	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	448, 451, 473
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	2 cut(s)	107, 542
BclI	TGATCA	1 cut(s)	39
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	127, 434
BisI	GCNGC	3 cut(s)	437, 462, 465
BlsI	GCNGC	3 cut(s)	438, 463, 466
Bme1390I	CCNGG	2 cut(s)	107, 542
BmgT120I	GGNCC	2 cut(s)	7, 14
BmrFI	CCNGG	2 cut(s)	107, 542
BmsI	GCATC	3 cut(s)	226, 336, 448
Bpu14I	TTCGAA	1 cut(s)	304
BsaHI	GRCGYC	2 cut(s)	374, 419
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 343, 541
Bse118I	RCCGGY	1 cut(s)	336
Bse1I	ACTGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	107, 542
BseDI	CCNNGG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	166, 343, 541
BseNI	ACTGG	1 cut(s)	171
BseXI	GCAGC	3 cut(s)	448, 451, 473
Bsh1236I	CGCG	2 cut(s)	555, 557
BshFI	GGCC	2 cut(s)	9, 16
BshTI	ACCGGT	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	337
BslI	CCNNNNNNNGG	3 cut(s)	166, 343, 541
BsnI	GGCC	2 cut(s)	9, 16
Bsp119I	TTCGAA	1 cut(s)	304
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	39, 95
BspACI	CCGC	2 cut(s)	367, 439
BspANI	GGCC	2 cut(s)	9, 16
BspFNI	CGCG	2 cut(s)	555, 557
BspMAI	CTGCAG	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	39, 95
BssNI	GRCGYC	2 cut(s)	374, 419
Bst2UI	CCWGG	2 cut(s)	107, 542
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	2 cut(s)	374, 419
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	3 cut(s)	83, 203, 469
BstDSI	CCRYGG	1 cut(s)	10
BstFNI	CGCG	2 cut(s)	555, 557
BstHHI	GCGC	1 cut(s)	557
BstKTI	GATC	2 cut(s)	42, 98
BstMBI	GATC	2 cut(s)	39, 95
BstMWI	GCNNNNNNNGC	1 cut(s)	561
BstNI	CCWGG	2 cut(s)	107, 542
BstNSI	RCATGY	2 cut(s)	85, 471
BstSCI	CCNGG	2 cut(s)	105, 540
BstSFI	CTRYAG	2 cut(s)	127, 434
BstUI	CGCG	2 cut(s)	555, 557
BstV1I	GCAGC	3 cut(s)	448, 451, 473
BsuRI	GGCC	2 cut(s)	9, 16
BtgI	CCRYGG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	3 cut(s)	83, 203, 469
CfoI	GCGC	1 cut(s)	557
Cfr10I	RCCGGY	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	7, 14
CseI	GACGC	2 cut(s)	427, 460
CsiI	ACCWGGT	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	340, 527
CspAI	ACCGGT	1 cut(s)	336
CviAII	CATG	4 cut(s)	37, 66, 82, 468
CviJI	RGCY	6 cut(s)	9, 16, 205, 347, 464, 564
CviKI_1	RGCY	6 cut(s)	9, 16, 205, 347, 464, 564
CviQI	GTAC	2 cut(s)	340, 527
DpnI	GATC	2 cut(s)	41, 97
DpnII	GATC	2 cut(s)	39, 95
DraI	TTTAAA	1 cut(s)	430
DraIII	CACNNNGTG	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	105, 540
EcoT22I	ATGCAT	1 cut(s)	83
FaeI	CATG	4 cut(s)	40, 69, 85, 471
FatI	CATG	4 cut(s)	36, 65, 81, 467
FauI	CCCGC	1 cut(s)	432
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	437, 462, 465
Fsp4HI	GCNGC	3 cut(s)	437, 462, 465
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	556
GluI	GCNGC	3 cut(s)	437, 462, 465
HaeIII	GGCC	2 cut(s)	9, 16
HapII	CCGG	1 cut(s)	337
HgaI	GACGC	2 cut(s)	427, 460
HhaI	GCGC	1 cut(s)	557
Hin1I	GRCGYC	2 cut(s)	374, 419
Hin1II	CATG	4 cut(s)	40, 69, 85, 471
Hin6I	GCGC	1 cut(s)	555
HinP1I	GCGC	1 cut(s)	555
HinfI	GANTC	1 cut(s)	409
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	4 cut(s)	238, 289, 380, 530
Hpy188I	TCNGA	3 cut(s)	95, 197, 417
Hpy188III	TCNNGA	5 cut(s)	43, 99, 184, 284, 503
Hpy99I	CGWCG	3 cut(s)	185, 359, 427
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	4 cut(s)	81, 436, 461, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	374
Hsp92I	GRCGYC	2 cut(s)	374, 419
Hsp92II	CATG	4 cut(s)	40, 69, 85, 471
HspAI	GCGC	1 cut(s)	555
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	39, 95
Lsp1109I	GCAGC	3 cut(s)	448, 451, 473
LweI	GCATC	3 cut(s)	226, 336, 448
MabI	ACCWGGT	1 cut(s)	540
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	3 cut(s)	229, 503, 536
MalI	GATC	2 cut(s)	41, 97
MboI	GATC	2 cut(s)	39, 95
MboII	GAAGA	4 cut(s)	63, 404, 507, 560
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	383, 485
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	250, 254, 299, 519
Mph1103I	ATGCAT	1 cut(s)	83
MseI	TTAA	2 cut(s)	33, 429
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	2 cut(s)	439, 464
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	107, 542
MssI	GTTTAAAC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	107, 542
MvnI	CGCG	2 cut(s)	555, 557
MwoI	GCNNNNNNNGC	1 cut(s)	561
NdeII	GATC	2 cut(s)	39, 95
NlaIII	CATG	4 cut(s)	40, 69, 85, 471
NmuCI	GTSAC	2 cut(s)	503, 536
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	2 cut(s)	85, 471
NspV	TTCGAA	1 cut(s)	304
PaeI	GCATGC	2 cut(s)	85, 471
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PflFI	GACNNNGTC	2 cut(s)	421, 498
PinAI	ACCGGT	1 cut(s)	336
PkrI	GCNGC	3 cut(s)	438, 463, 466
PleI	GAGTC	1 cut(s)	403
PmeI	GTTTAAAC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	105, 540
PspGI	CCWGG	2 cut(s)	105, 540
PspPI	GGNCC	2 cut(s)	7, 14
PstI	CTGCAG	1 cut(s)	438
PsyI	GACNNNGTC	2 cut(s)	421, 498
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	341, 528
RsaNI	GTAC	2 cut(s)	340, 527
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	33, 429
SatI	GCNGC	3 cut(s)	437, 462, 465
Sau3AI	GATC	2 cut(s)	39, 95
Sau96I	GGNCC	2 cut(s)	7, 14
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	2 cut(s)	107, 542
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	291, 377, 466, 543
SexAI	ACCWGGT	1 cut(s)	540
SfaNI	GCATC	3 cut(s)	226, 336, 448
SfcI	CTRYAG	2 cut(s)	127, 434
SfuI	TTCGAA	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	501
SphI	GCATGC	2 cut(s)	85, 471
Sse9I	AATT	2 cut(s)	383, 485
SsiI	CCGC	2 cut(s)	367, 439
SspI	AATATT	1 cut(s)	448
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	105, 540
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	3 cut(s)	183, 285, 304
TasI	AATT	2 cut(s)	383, 485
TatI	WGTACW	1 cut(s)	526
Tru1I	TTAA	2 cut(s)	33, 429
Tru9I	TTAA	2 cut(s)	33, 429
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	2 cut(s)	503, 536
TseI	GCWGC	3 cut(s)	436, 461, 464
Tsp45I	GTSAC	2 cut(s)	503, 536
TspDTI	ATGAA	2 cut(s)	63, 71
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	1 cut(s)	125
Tth111I	GACNNNGTC	2 cut(s)	421, 498
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	2 cut(s)	85, 471
XspI	CTAG	1 cut(s)	350
ZraI	GACGTC	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.