pycom04g17620

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007007
Physical Location & Seq
Forward (+)
19928941 .. 19932211
3271 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17620.8

Sequence Viewer

Length: 852 bp
ATGAGCAGACGATCGAGTCGCACTATCTACGTGGGCAATCTGCCCGGAGATATTCGTATGAGAGAAGTTGAAGATTTTTTTCTCAAGTATGGGCCAATTGTTGACATTGATCTCAAAATCCCTCCGAGACCGCCAGGTTATGCTTTTGTTGAATTTGAAGATCCTCGTGATGCTGATGATGCAATTTACGGCCGGGATGGGTATGACTTTGATGGGTTTCGTTTACGGGTTGAATTAGCGCGTGGTGGCCGACACTCCTCATCAGATCGCTACAGCAGTTACAGTCGTAGTAGCAGTAGCCGTGGTGTTTCCCGGCGCTCTGACTATCGTGTACTGGTCACTGGATTGCCTCCTTCTGTTTCGTGGCAGGATCTGAAAAGGAAGATCGATCGCATGCGTCGAGCTGGCGATGTCTGTTTTTCACAAGTGTTCCGTGACCGTGGTGGCATGACGGGAATTGTAGACTACACAAACTACGAGGATATGAAATATGCTATCAGAAAACTTGATGACTCTGAATTCAGAAATGCCTTTGATCGCTCTTACATACGGGTGAGGGAGTATGATTCTAGGCGTAGCTATTCCAGAAGCCCCAGTTATGACTATAGACGGAGCTACTCTAGAAGCCCCAGTCGTACTCCATATATGTCAAGAAGTCCAAGTGTCAGCCGCAGCTATAGCTATGGTGGCCGGAGCAGAAGGTCCCAATTGGTTTTCCCATATCACCGGAGGCAACATACTCACGTTCCCGCTCAAGATCTAGCTTTTGCGGAGATCTGGGGACTGGATCTTAGGAACTGGATGTGGTGCTCATGCCTCCAACTCTTAGTTGAGGTAACGCGACTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04657 ko05168 map03040 map04657 map05168
Pfam Domains
Protein Families
RRM_1

Protein Analysis

284

Amino Acids

33.3

Weight (kDa)

9.79

Isoelectric Point (pI)

81.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 752
AccI GTMKAC 1 cut(s) 462
AccII CGCG 2 cut(s) 241, 841
AciI CCGC 4 cut(s) 131, 670, 750, 770
AclWI GGATC 3 cut(s) 155, 378, 795
AcoI YGGCCR 3 cut(s) 190, 247, 688
AcsI RAATTY 2 cut(s) 152, 518
AfaI GTAC 2 cut(s) 333, 637
AgsI TTSAA 4 cut(s) 71, 152, 158, 233
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 6 cut(s) 404, 579, 615, 675, 681, 764
AluI AGCT 6 cut(s) 404, 579, 615, 675, 681, 764
Alw21I GWGCWC 1 cut(s) 812
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 3 cut(s) 155, 378, 795
AlwNI CAGNNNCTG 1 cut(s) 373
AoxI GGCC 4 cut(s) 92, 190, 247, 688
ApeKI GCWGC 1 cut(s) 672
ApoI RAATTY 2 cut(s) 152, 518
AspLEI GCGC 2 cut(s) 241, 318
AspS9I GGNCC 2 cut(s) 92, 702
AsuC2I CCSGG 3 cut(s) 45, 194, 313
AsuHPI GGTGA 2 cut(s) 565, 716
AvaII GGWCC 1 cut(s) 702
BauI CACGAG 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 812
BbvI GCAGC 1 cut(s) 684
BccI CCATC 2 cut(s) 191, 206
BceAI ACGGC 2 cut(s) 205, 285
BciT130I CCWGG 1 cut(s) 135
BcnI CCSGG 3 cut(s) 45, 194, 313
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 3 cut(s) 570, 621, 761
BfmI CTRYAG 3 cut(s) 271, 604, 676
BfoI RGCGCY 1 cut(s) 319
BglII AGATCT 2 cut(s) 757, 774
BisI GCNGC 2 cut(s) 670, 673
BlsI GCNGC 2 cut(s) 671, 674
Bme1390I CCNGG 4 cut(s) 45, 135, 194, 313
Bme18I GGWCC 1 cut(s) 702
BmgT120I GGNCC 2 cut(s) 92, 702
BmiI GGNNCC 1 cut(s) 704
BmrFI CCNGG 4 cut(s) 45, 135, 194, 313
BmrI ACTGGG 2 cut(s) 588, 624
BmsI GCATC 2 cut(s) 160, 169
BmuI ACTGGG 2 cut(s) 588, 624
BpuEI CTTGAG 2 cut(s) 68, 738
BpuMI CCSGG 3 cut(s) 45, 194, 313
Bsa29I ATCGAT 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 301, 439
BsaWI WCCGGW 1 cut(s) 726
Bse1I ACTGG 6 cut(s) 339, 346, 594, 630, 789, 803
BseBI CCWGG 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 301, 439
BseGI GGATG 2 cut(s) 202, 807
BseNI ACTGG 6 cut(s) 339, 346, 594, 630, 789, 803
BseRI GAGGAG 1 cut(s) 247
BseX3I CGGCCG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 684
Bsh1236I CGCG 2 cut(s) 241, 841
Bsh1285I CGRYCG 3 cut(s) 14, 193, 391
BshFI GGCC 4 cut(s) 94, 192, 249, 690
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 3 cut(s) 14, 193, 391
BsiHKAI GWGCWC 1 cut(s) 812
BsiSI CCGG 5 cut(s) 45, 193, 313, 691, 727
BslFI GGGAC 2 cut(s) 688, 795
BsmAI GTCTC 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 688, 795
BsnI GGCC 4 cut(s) 94, 192, 249, 690
Bso31I GGTCTC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 812
BspACI CCGC 4 cut(s) 131, 670, 750, 770
BspANI GGCC 4 cut(s) 94, 192, 249, 690
BspDI ATCGAT 1 cut(s) 387
BspFNI CGCG 2 cut(s) 241, 841
BspLI GGNNCC 1 cut(s) 704
BspPI GGATC 3 cut(s) 155, 378, 795
BspTNI GGTCTC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 752
BsrI ACTGG 6 cut(s) 339, 346, 594, 630, 789, 803
BssECI CCNNGG 2 cut(s) 301, 439
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 2 cut(s) 284, 440
BstBAI YACGTR 1 cut(s) 31
BstC8I GCNNGC 2 cut(s) 395, 406
BstDEI CTNAG 2 cut(s) 791, 826
BstDSI CCRYGG 2 cut(s) 301, 439
BstF5I GGATG 2 cut(s) 202, 807
BstFNI CGCG 2 cut(s) 241, 841
BstH2I RGCGCY 1 cut(s) 319
BstHHI GCGC 2 cut(s) 241, 318
BstMAI GTCTC 1 cut(s) 121
BstMCI CGRYCG 3 cut(s) 14, 193, 391
BstMWI GCNNNNNNNGC 3 cut(s) 179, 678, 687
BstNI CCWGG 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 4 cut(s) 43, 133, 192, 311
BstSFI CTRYAG 3 cut(s) 271, 604, 676
BstUI CGCG 2 cut(s) 241, 841
BstV1I GCAGC 1 cut(s) 684
BstX2I RGATCY 5 cut(s) 160, 370, 757, 774, 787
BstYI RGATCY 5 cut(s) 160, 370, 757, 774, 787
BstZI CGGCCG 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 4 cut(s) 94, 192, 249, 690
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 2 cut(s) 301, 439
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 202, 807
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 2 cut(s) 395, 406
CaiI CAGNNNCTG 1 cut(s) 373
CfoI GCGC 2 cut(s) 241, 318
Cfr13I GGNCC 2 cut(s) 92, 702
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 332, 636
CviAII CATG 3 cut(s) 394, 448, 813
CviQI GTAC 2 cut(s) 332, 636
DdeI CTNAG 2 cut(s) 791, 826
DrdI GACNNNNNNGTC 1 cut(s) 15
DseDI GACNNNNNNGTC 1 cut(s) 15
EaeI YGGCCR 3 cut(s) 190, 247, 688
EagI CGGCCG 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 190
Eco31I GGTCTC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 702
Eco52I CGGCCG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 702
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 133
FaeI CATG 3 cut(s) 397, 451, 816
FaqI GGGAC 2 cut(s) 688, 795
FatI CATG 3 cut(s) 393, 447, 812
FauI CCCGC 1 cut(s) 757
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 670, 673
FokI GGATG 2 cut(s) 209, 814
Fsp4HI GCNGC 2 cut(s) 670, 673
FspBI CTAG 3 cut(s) 570, 621, 761
GlaI GCGC 2 cut(s) 240, 317
GluI GCNGC 2 cut(s) 670, 673
HaeII RGCGCY 1 cut(s) 319
HaeIII GGCC 4 cut(s) 94, 192, 249, 690
HapII CCGG 5 cut(s) 45, 193, 313, 691, 727
HgaI GACGC 1 cut(s) 386
HhaI GCGC 2 cut(s) 241, 318
Hin1II CATG 3 cut(s) 397, 451, 816
Hin6I GCGC 2 cut(s) 239, 316
HinP1I GCGC 2 cut(s) 239, 316
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 3 cut(s) 16, 512, 566
HpaII CCGG 5 cut(s) 45, 193, 313, 691, 727
HphI GGTGA 2 cut(s) 565, 716
Hpy166II GTNNAC 4 cut(s) 103, 224, 332, 463
Hpy188I TCNGA 7 cut(s) 126, 265, 322, 375, 500, 517, 524
Hpy188III TCNNGA 5 cut(s) 167, 585, 621, 651, 755
Hpy8I GTNNAC 4 cut(s) 103, 224, 332, 463
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 2 cut(s) 363, 693
HpyCH4III ACNGT 2 cut(s) 284, 440
HpyCH4IV ACGT 2 cut(s) 30, 744
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 678, 687
HpyF3I CTNAG 2 cut(s) 791, 826
HpySE526I ACGT 2 cut(s) 30, 744
Hsp92II CATG 3 cut(s) 397, 451, 816
HspAI GCGC 2 cut(s) 239, 316
LmnI GCTCC 2 cut(s) 612, 693
Lsp1109I GCAGC 1 cut(s) 684
LweI GCATC 2 cut(s) 160, 169
MaeI CTAG 3 cut(s) 570, 621, 761
MaeII ACGT 2 cut(s) 30, 744
MaeIII GTNAC 4 cut(s) 278, 337, 434, 835
MbiI CCGCTC 1 cut(s) 752
MboII GAAGA 3 cut(s) 83, 170, 394
MfeI CAATTG 2 cut(s) 96, 707
MflI RGATCY 5 cut(s) 160, 370, 757, 774, 787
MhlI GDGCHC 1 cut(s) 812
MluCI AATT 7 cut(s) 96, 152, 183, 233, 456, 518, 707
MlyI GAGTC 2 cut(s) 25, 506
MmeI TCCRAC 1 cut(s) 844
MnlI CCTC 9 cut(s) 132, 174, 268, 360, 472, 549, 723, 826, 827
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 5 cut(s) 45, 193, 313, 691, 727
MspR9I CCNGG 4 cut(s) 45, 135, 194, 313
MunI CAATTG 2 cut(s) 96, 707
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 2 cut(s) 241, 841
MwoI GCNNNNNNNGC 3 cut(s) 179, 678, 687
NciI CCSGG 3 cut(s) 45, 194, 313
NlaIII CATG 3 cut(s) 397, 451, 816
NlaIV GGNNCC 1 cut(s) 704
NmuCI GTSAC 2 cut(s) 337, 434
NspI RCATGY 1 cut(s) 397
PaeI GCATGC 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 397
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 2 cut(s) 671, 674
Ple19I CGATCG 2 cut(s) 14, 391
PleI GAGTC 2 cut(s) 24, 506
PpsI GAGTC 2 cut(s) 24, 506
Ppu21I YACGTR 1 cut(s) 31
PpuMI RGGWCCY 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 704
PspPI GGNCC 2 cut(s) 92, 702
PspPPI RGGWCCY 1 cut(s) 702
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 5 cut(s) 160, 370, 757, 774, 787
PvuI CGATCG 2 cut(s) 14, 391
RsaI GTAC 2 cut(s) 333, 637
RsaNI GTAC 2 cut(s) 332, 636
RseI CAYNNNNRTG 1 cut(s) 551
SatI GCNGC 2 cut(s) 670, 673
Sau96I GGNCC 2 cut(s) 92, 702
SchI GAGTC 2 cut(s) 25, 506
ScrFI CCNGG 4 cut(s) 45, 135, 194, 313
SduI GDGCHC 1 cut(s) 812
SfaNI GCATC 2 cut(s) 160, 169
SfcI CTRYAG 3 cut(s) 271, 604, 676
SinI GGWCC 1 cut(s) 702
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 83, 753
SmoI CTYRAG 2 cut(s) 83, 753
SphI GCATGC 1 cut(s) 397
Sse9I AATT 7 cut(s) 96, 152, 183, 233, 456, 518, 707
SsiI CCGC 4 cut(s) 131, 670, 750, 770
SspMI CTAG 3 cut(s) 570, 621, 761
StyD4I CCNGG 4 cut(s) 43, 133, 192, 311
TaaI ACNGT 2 cut(s) 284, 440
TaiI ACGT 2 cut(s) 33, 747
TaqI TCGA 3 cut(s) 14, 387, 400
TasI AATT 7 cut(s) 96, 152, 183, 233, 456, 518, 707
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 672
TfiI GAWTC 1 cut(s) 566
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 337, 434
TseI GCWGC 1 cut(s) 672
Tsp45I GTSAC 2 cut(s) 337, 434
TspDTI ATGAA 1 cut(s) 500
TspGWI ACGGA 2 cut(s) 422, 625
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 702
XapI RAATTY 2 cut(s) 152, 518
XbaI TCTAGA 1 cut(s) 620
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 462
XspI CTAG 3 cut(s) 570, 621, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.