Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000046.1

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Forward (+)

52302 .. 57847

Gene Structure 5546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000046.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atggtggcttgggtggagttctccgagatatcaagggaattttcaaggccgcctttccacgaccgatgcagcagttgtgattttcttttgttcttcaagggaaaaatgagtagccgatcgagtcgtactatctacgtggggaatctgcctggagatattcgtatgagagaaattgaagatttattcatgaagtatggaccgattgttgacattgatcttaagatccctcccagaccaccgggttatgcttttattgagtttgaagatccacgtgatgctgatgatgcgatttatggccgggatggttgcaactttgacgggtatcgcttacgggttgaactagcacatggtagacgtggatattcatcatcagcagatcgattcagcagttacagtcgtagtagcagtagccgtggagcttcccgccgttctgactatcgtgtgctggtcactggattacctgcttctgcttcatggcaggatctgaaggatcacatgcggcaagctggagatgtttgtttttcgcaagtgttccgtgaccgccgtggcatgacgggagttgtagactacacaaattacgatgacatgaaatatgcgatcaggaaattggatgattctgaatttagaaatgctttttctcggtcgaggaatatgattctagtcttgggtattccagaagccccagttatgactcaaggcggagctactctagaagtcccagtcgtagtccatatctgtcaagaagtcgcagtcgcagccgtagctttgggggccagagcagaaggtccatattgctatttttctttgggcaaccttaggtattttactttttctccatggaatttgacaaagacttttgttgttgcagcatatcaccggatgtggactattcacgtcgctctcctaggtctgcctcaccttccccttcaaggtatctcacttgctactaaacttggactggatcttaggaacttgacgggaagtggtgttgatgcctgcaactctttaggttcaggaccttgggtcagagggtataccgttattgagattgatttggattttcacattattgcagatctctgtcaagatctagatctccagttcgttctccttattatggaactcttcgcaggtcgccatcaagatccagaagcttatcccgttagcttgtgcctgttttcttgcatgacttgcattaatacgtggcttagattggggtgggtacggttcgggccggctcggtgcgaaccggtcaatgcggttgggccaaaagtcaaaccaccaacagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

430

Amino Acids

48.29

Weight (kDa)

7.08

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	469, 1121
AccI	GTMKAC	3 cut(s)	352, 564, 1034
AciI	CCGC	6 cut(s)	50, 424, 499, 541, 699, 1259
AclWI	GGATC	6 cut(s)	217, 260, 489, 498, 969, 1139
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	3 cut(s)	38, 620, 841
AcuI	CTGAAG	1 cut(s)	506
AcvI	CACGTG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	127, 1224
AfiI	CCNNNNNNNGG	2 cut(s)	929, 1117
AflII	CTTAAG	1 cut(s)	218
AgeI	ACCGGT	1 cut(s)	1249
AgsI	TTSAA	6 cut(s)	45, 97, 176, 263, 338, 929
AhdI	GACNNNNNGTC	1 cut(s)	1022
AjiI	CACGTC	2 cut(s)	356, 895
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	7 cut(s)	419, 506, 704, 764, 1154, 1167, 1289
AluI	AGCT	7 cut(s)	419, 506, 704, 764, 1154, 1167, 1289
AlwI	GGATC	6 cut(s)	217, 260, 489, 498, 969, 1139
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	5 cut(s)	47, 295, 771, 1232, 1265
ApeKI	GCWGC	3 cut(s)	69, 755, 866
ApoI	RAATTY	3 cut(s)	38, 620, 841
AseI	ATTAAT	1 cut(s)	1197
AsiGI	ACCGGT	1 cut(s)	1249
AspA2I	CCTAGG	1 cut(s)	904
AspS9I	GGNCC	6 cut(s)	197, 771, 785, 1016, 1232, 1265
AsuC2I	CCSGG	2 cut(s)	240, 299
AsuHPI	GGTGA	2 cut(s)	866, 908
AvaII	GGWCC	3 cut(s)	197, 785, 1016
AvrII	CCTAGG	1 cut(s)	904
AxyI	CCTNAGG	1 cut(s)	815
BbrPI	CACGTG	1 cut(s)	272
BbvI	GCAGC	3 cut(s)	81, 767, 878
BccI	CCATC	2 cut(s)	296, 1146
BceAI	ACGGC	4 cut(s)	396, 411, 528, 743
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	2 cut(s)	240, 299
BfaI	CTAG	5 cut(s)	341, 659, 710, 905, 1091
BfrI	CTTAAG	1 cut(s)	218
BfuAI	ACCTGC	2 cut(s)	469, 1121
BglII	AGATCT	3 cut(s)	1075, 1087, 1093
BisI	GCNGC	5 cut(s)	50, 70, 500, 756, 867
BlnI	CCTAGG	1 cut(s)	904
BlsI	GCNGC	5 cut(s)	51, 71, 501, 757, 868
Bme1390I	CCNGG	3 cut(s)	150, 240, 299
Bme18I	GGWCC	3 cut(s)	197, 785, 1016
BmeRI	GACNNNNNGTC	1 cut(s)	1022
BmgBI	CACGTC	2 cut(s)	356, 895
BmgT120I	GGNCC	6 cut(s)	197, 771, 785, 1016, 1232, 1265
BmiI	GGNNCC	1 cut(s)	772
BmrFI	CCNGG	3 cut(s)	150, 240, 299
BmrI	ACTGGG	2 cut(s)	677, 713
BmsI	GCATC	4 cut(s)	56, 265, 274, 982
BmuI	ACTGGG	2 cut(s)	677, 713
BpmI	CTGGAG	3 cut(s)	171, 528, 1082
BpuEI	CTTGAG	1 cut(s)	678
BpuMI	CCSGG	2 cut(s)	240, 299
Bsa29I	ATCGAT	1 cut(s)	379
BsaAI	YACGTR	3 cut(s)	136, 272, 1203
BsaBI	GATNNNNATC	2 cut(s)	364, 1092
BsaJI	CCNNGG	5 cut(s)	412, 544, 836, 904, 1019
BsaWI	WCCGGW	2 cut(s)	876, 1249
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	2 cut(s)	929, 1117
Bse118I	RCCGGY	2 cut(s)	1234, 1249
Bse1I	ACTGG	5 cut(s)	457, 683, 719, 963, 1099
Bse21I	CCTNAGG	1 cut(s)	815
Bse8I	GATNNNNATC	2 cut(s)	364, 1092
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	379
BseDI	CCNNGG	5 cut(s)	412, 544, 836, 904, 1019
BseGI	GGATG	3 cut(s)	307, 616, 885
BseJI	GATNNNNATC	2 cut(s)	364, 1092
BseLI	CCNNNNNNNGG	2 cut(s)	929, 1117
BseNI	ACTGG	5 cut(s)	457, 683, 719, 963, 1099
BseXI	GCAGC	3 cut(s)	81, 767, 878
Bsh1285I	CGRYCG	3 cut(s)	64, 119, 644
BshFI	GGCC	5 cut(s)	49, 297, 773, 1234, 1267
BshTI	ACCGGT	1 cut(s)	1249
BshVI	ATCGAT	1 cut(s)	379
BsiEI	CGRYCG	3 cut(s)	64, 119, 644
BsiSI	CCGG	5 cut(s)	239, 298, 877, 1235, 1250
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	2 cut(s)	929, 1117
BsmFI	GGGAC	1 cut(s)	701
BsnI	GGCC	5 cut(s)	49, 297, 773, 1234, 1267
Bsp19I	CCATGG	1 cut(s)	836
BspACI	CCGC	6 cut(s)	50, 424, 499, 541, 699, 1259
BspANI	GGCC	5 cut(s)	49, 297, 773, 1234, 1267
BspDI	ATCGAT	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	772
BspMI	ACCTGC	2 cut(s)	469, 1121
BspPI	GGATC	6 cut(s)	217, 260, 489, 498, 969, 1139
BspTI	CTTAAG	1 cut(s)	218
BsrFI	RCCGGY	2 cut(s)	1234, 1249
BsrI	ACTGG	5 cut(s)	457, 683, 719, 963, 1099
BssAI	RCCGGY	2 cut(s)	1234, 1249
BssECI	CCNNGG	5 cut(s)	412, 544, 836, 904, 1019
BssNAI	GTATAC	1 cut(s)	1035
BssT1I	CCWWGG	3 cut(s)	836, 904, 1019
Bst1107I	GTATAC	1 cut(s)	1035
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	395, 1039, 1227
Bst6I	CTCTTC	1 cut(s)	1130
BstAFI	CTTAAG	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	1191
BstBAI	YACGTR	3 cut(s)	136, 272, 1203
BstC8I	GCNNGC	3 cut(s)	504, 997, 1236
BstDEI	CTNAG	3 cut(s)	815, 965, 1208
BstDSI	CCRYGG	3 cut(s)	412, 544, 836
BstF5I	GGATG	3 cut(s)	307, 616, 885
BstMCI	CGRYCG	3 cut(s)	64, 119, 644
BstMWI	GCNNNNNNNGC	5 cut(s)	284, 755, 761, 770, 1191
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	3 cut(s)	148, 238, 297
BstV1I	GCAGC	3 cut(s)	81, 767, 878
BstX2I	RGATCY	8 cut(s)	222, 265, 481, 961, 1075, 1087, 1093, 1144
BstYI	RGATCY	8 cut(s)	222, 265, 481, 961, 1075, 1087, 1093, 1144
BstZ17I	GTATAC	1 cut(s)	1035
Bsu15I	ATCGAT	1 cut(s)	379
Bsu36I	CCTNAGG	1 cut(s)	815
BsuRI	GGCC	5 cut(s)	49, 297, 773, 1234, 1267
BsuTUI	ATCGAT	1 cut(s)	379
BtgI	CCRYGG	3 cut(s)	412, 544, 836
BtrI	CACGTC	2 cut(s)	356, 895
BtsCI	GGATG	3 cut(s)	307, 616, 885
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	2 cut(s)	469, 1121
Cac8I	GCNNGC	3 cut(s)	504, 997, 1236
CaiI	CAGNNNCTG	1 cut(s)	484
CciI	TCATGA	1 cut(s)	186
Cfr10I	RCCGGY	2 cut(s)	1234, 1249
Cfr13I	GGNCC	6 cut(s)	197, 771, 785, 1016, 1232, 1265
ClaI	ATCGAT	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	126, 1223
CspAI	ACCGGT	1 cut(s)	1249
CviAII	CATG	8 cut(s)	187, 347, 474, 496, 550, 586, 837, 1186
CviQI	GTAC	2 cut(s)	126, 1223
DdeI	CTNAG	3 cut(s)	815, 965, 1208
DriI	GACNNNNNGTC	1 cut(s)	1022
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	1130
Eam1105I	GACNNNNNGTC	1 cut(s)	1022
EarI	CTCTTC	1 cut(s)	1130
EciI	GGCGGA	1 cut(s)	714
Eco130I	CCWWGG	3 cut(s)	836, 904, 1019
Eco32I	GATATC	1 cut(s)	30
Eco47I	GGWCC	3 cut(s)	197, 785, 1016
Eco57I	CTGAAG	1 cut(s)	506
Eco72I	CACGTG	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	815
EcoO109I	RGGNCCY	1 cut(s)	1016
EcoRII	CCWGG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	30
EcoT14I	CCWWGG	3 cut(s)	836, 904, 1019
ErhI	CCWWGG	3 cut(s)	836, 904, 1019
FaeI	CATG	8 cut(s)	190, 350, 477, 499, 553, 589, 840, 1189
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	8 cut(s)	186, 346, 473, 495, 549, 585, 836, 1185
FauI	CCCGC	1 cut(s)	431
FblI	GTMKAC	3 cut(s)	352, 564, 1034
Fnu4HI	GCNGC	5 cut(s)	50, 70, 500, 756, 867
FokI	GGATG	3 cut(s)	314, 623, 892
Fsp4HI	GCNGC	5 cut(s)	50, 70, 500, 756, 867
FspBI	CTAG	5 cut(s)	341, 659, 710, 905, 1091
GluI	GCNGC	5 cut(s)	50, 70, 500, 756, 867
GsuI	CTGGAG	3 cut(s)	171, 528, 1082
HaeIII	GGCC	5 cut(s)	49, 297, 773, 1234, 1267
HapII	CCGG	5 cut(s)	239, 298, 877, 1235, 1250
Hin1II	CATG	8 cut(s)	190, 350, 477, 499, 553, 589, 840, 1189
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	1152
HinfI	GANTC	6 cut(s)	121, 142, 381, 614, 655, 691
HpaII	CCGG	5 cut(s)	239, 298, 877, 1235, 1250
HphI	GGTGA	2 cut(s)	866, 908
Hpy166II	GTNNAC	5 cut(s)	208, 353, 565, 885, 1035
Hpy188I	TCNGA	5 cut(s)	25, 433, 486, 619, 1028
Hpy8I	GTNNAC	5 cut(s)	208, 353, 565, 885, 1035
Hpy99I	CGWCG	1 cut(s)	899
HpyAV	CCTTC	4 cut(s)	481, 776, 929, 935
HpyCH4III	ACNGT	3 cut(s)	395, 1039, 1227
HpyCH4IV	ACGT	5 cut(s)	135, 271, 355, 894, 1202
HpyCH4V	TGCA	7 cut(s)	69, 309, 866, 999, 1073, 1185, 1194
HpyF10VI	GCNNNNNNNGC	5 cut(s)	284, 755, 761, 770, 1191
HpyF3I	CTNAG	3 cut(s)	815, 965, 1208
HpySE526I	ACGT	5 cut(s)	135, 271, 355, 894, 1202
Hsp92II	CATG	8 cut(s)	190, 350, 477, 499, 553, 589, 840, 1189
KroI	GCCGGC	1 cut(s)	1234
KroNI	GCCGGC	1 cut(s)	1236
LmnI	GCTCC	2 cut(s)	416, 701
Lsp1109I	GCAGC	3 cut(s)	81, 767, 878
LweI	GCATC	4 cut(s)	56, 265, 274, 982
MaeI	CTAG	5 cut(s)	341, 659, 710, 905, 1091
MaeII	ACGT	5 cut(s)	135, 271, 355, 894, 1202
MaeIII	GTNAC	3 cut(s)	389, 448, 536
MboII	GAAGA	4 cut(s)	85, 188, 275, 1117
MflI	RGATCY	8 cut(s)	222, 265, 481, 961, 1075, 1087, 1093, 1144
MluCI	AATT	6 cut(s)	38, 171, 574, 605, 620, 841
MlyI	GAGTC	2 cut(s)	130, 685
MnlI	CCTC	4 cut(s)	237, 639, 924, 1022
MroNI	GCCGGC	1 cut(s)	1234
MseI	TTAA	2 cut(s)	219, 1197
MspCI	CTTAAG	1 cut(s)	218
MspI	CCGG	5 cut(s)	239, 298, 877, 1235, 1250
MspR9I	CCNGG	3 cut(s)	150, 240, 299
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	5 cut(s)	284, 755, 761, 770, 1191
NaeI	GCCGGC	1 cut(s)	1236
NciI	CCSGG	2 cut(s)	240, 299
NcoI	CCATGG	1 cut(s)	836
NgoMIV	GCCGGC	1 cut(s)	1234
NlaIII	CATG	8 cut(s)	190, 350, 477, 499, 553, 589, 840, 1189
NlaIV	GGNNCC	1 cut(s)	772
NmuCI	GTSAC	2 cut(s)	448, 536
NspI	RCATGY	1 cut(s)	499
PagI	TCATGA	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	1236
PfeI	GAWTC	4 cut(s)	142, 381, 614, 655
PinAI	ACCGGT	1 cut(s)	1249
PkrI	GCNGC	5 cut(s)	51, 71, 501, 757, 868
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	2 cut(s)	129, 685
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
PpsI	GAGTC	2 cut(s)	129, 685
Ppu21I	YACGTR	3 cut(s)	136, 272, 1203
PpuMI	RGGWCCY	1 cut(s)	1016
PshBI	ATTAAT	1 cut(s)	1197
Psp5II	RGGWCCY	1 cut(s)	1016
Psp6I	CCWGG	1 cut(s)	148
PspCI	CACGTG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	772
PspPI	GGNCC	6 cut(s)	197, 771, 785, 1016, 1232, 1265
PspPPI	RGGWCCY	1 cut(s)	1016
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	8 cut(s)	222, 265, 481, 961, 1075, 1087, 1093, 1144
PvuI	CGATCG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	127, 1224
RsaNI	GTAC	2 cut(s)	126, 1223
SaqAI	TTAA	2 cut(s)	219, 1197
SatI	GCNGC	5 cut(s)	50, 70, 500, 756, 867
Sau96I	GGNCC	6 cut(s)	197, 771, 785, 1016, 1232, 1265
SchI	GAGTC	2 cut(s)	130, 685
ScrFI	CCNGG	3 cut(s)	150, 240, 299
SfaNI	GCATC	4 cut(s)	56, 265, 274, 982
SinI	GGWCC	3 cut(s)	197, 785, 1016
SmlI	CTYRAG	2 cut(s)	218, 693
SmoI	CTYRAG	2 cut(s)	218, 693
Sse9I	AATT	6 cut(s)	38, 171, 574, 605, 620, 841
SsiI	CCGC	6 cut(s)	50, 424, 499, 541, 699, 1259
SspMI	CTAG	5 cut(s)	341, 659, 710, 905, 1091
StyD4I	CCNGG	3 cut(s)	148, 238, 297
StyI	CCWWGG	3 cut(s)	836, 904, 1019
TaaI	ACNGT	3 cut(s)	395, 1039, 1227
TaiI	ACGT	5 cut(s)	138, 274, 358, 897, 1205
TaqI	TCGA	3 cut(s)	119, 379, 644
TaqII	GACCGA	3 cut(s)	78, 214, 630
TasI	AATT	6 cut(s)	38, 171, 574, 605, 620, 841
TauI	GCSGC	2 cut(s)	52, 502
TfiI	GAWTC	4 cut(s)	142, 381, 614, 655
Tru1I	TTAA	2 cut(s)	219, 1197
Tru9I	TTAA	2 cut(s)	219, 1197
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	2 cut(s)	448, 536
TseI	GCWGC	3 cut(s)	69, 755, 866
Tsp45I	GTSAC	2 cut(s)	448, 536
TspDTI	ATGAA	5 cut(s)	175, 203, 354, 462, 602
TspGWI	ACGGA	1 cut(s)	524
TspRI	CASTG	1 cut(s)	457
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	3 cut(s)	197, 785, 1016
VspI	ATTAAT	1 cut(s)	1197
XapI	RAATTY	3 cut(s)	38, 620, 841
XbaI	TCTAGA	2 cut(s)	709, 1090
XceI	RCATGY	1 cut(s)	499
XmaJI	CCTAGG	1 cut(s)	904
XmiI	GTMKAC	3 cut(s)	352, 564, 1034
XspI	CTAG	5 cut(s)	341, 659, 710, 905, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.