Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Reverse (-)

44530301 .. 44535769

Gene Structure 5469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAGTAGCCGATCGAGTCGTACTATCTACGTGGGGAATCTGCCTGGAGATATTCGTATGAGAGAAATTGAAGATTTATTCATGAAGTATGGACCGATTGTTGACATTGATCTTAAGATCCCTCCCAGACCACCGGGTTATGCTTTTATTGAGTTTGAAGATCCACGGGATGCTGATGATGCGATTTATGGCCGGGATGGTTGCAACTTTGACGGGTATCGGTTACGGGTTGAACTAGCACATGGTAGACGTGGATATTCATCATCAGCAGATCGATTCAGCAGTTACAGTCGTAGTAGCAGTAGCCGTGGAGCTTCCCGCCGTTCTGACTATCGTGTGCTGGTCACTGGATTACCTGCTTCAGCTTCATGGCAGGATCTGAAGGATCACATGCGTCAAGCTGGAGATGTTTGTTTTTCGCAAGTGTTCCGTGACCGCTGTGGCATGACGGGAGTTGTAGACTACACAAATTACGATGACATGAAATATGCGATTAGGAAATTGGATGATTCTGAATTTAGAAATGCTTTTTCTCGGTCCTATATACGGGTTGAGGAATATGATTCTAGTCGTGGGTATTCCAGAAGCCCCAGTTATGACTCAAGGCAAAGCTACTCTAGAAGTTCCAGTCGTAGTCCATTTGTGTCGAGAAGTCGCAGTCGCAGCCGTAGCTATGGGGGCCAGAGCAGAAGCATATCACCGGATGTGGAATATTCACGCCGCTCTCCTAGGTCTGCCTCACCTTCTCCTTCAAGGAAGACATGTGATTATGAATGTGAAATAGACAGAGGACTGGATCTTAGGAACTTGACGGGAAGTGGTGTTGATGCCTGCAACTCTTTTGGTTCAGACTGCTGGAAAGATCATGAGATGCTGGCTTTAAAAACTTTGGGGCCAAAGGTCTATGATTTTACTGTTTCCTTCCCCTCCATTTATGATCTCGGTCAAGATCTAGATCTCCAGTTCGTTCTCCTTATTATGGAACTCTTCACAGGTCGCCATCAAGATCCAGAAGCTTATCCCGTTAGCTTGGTGACATGCATATGGGCCAAGTGCCTTTCCAGTTGTAGCATCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

359

Amino Acids

40.77

Weight (kDa)

7.97

Isoelectric Point (pI)

77.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	4.7e-16	RNA recognition motif
RRM_1	PF00076	113 - 175	2.1e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	723
AccI	GTMKAC	2 cut(s)	247, 459
AciI	CCGC	3 cut(s)	319, 436, 721
AclWI	GGATC	6 cut(s)	112, 155, 384, 393, 804, 1001
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	2 cut(s)	345, 401
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	546, 979
AflII	CTTAAG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	761
AgsI	TTSAA	4 cut(s)	71, 158, 233, 753
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	7 cut(s)	314, 365, 401, 612, 672, 1016, 1029
AluI	AGCT	7 cut(s)	314, 365, 401, 612, 672, 1016, 1029
AlwI	GGATC	6 cut(s)	112, 155, 384, 393, 804, 1001
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	4 cut(s)	190, 679, 893, 1047
ApeKI	GCWGC	1 cut(s)	663
ApoI	RAATTY	1 cut(s)	515
AspA2I	CCTAGG	1 cut(s)	728
AspS9I	GGNCC	5 cut(s)	92, 537, 679, 893, 1047
AsuC2I	CCSGG	2 cut(s)	135, 194
AsuHPI	GGTGA	3 cut(s)	690, 732, 1045
AvaII	GGWCC	2 cut(s)	92, 537
AvrII	CCTAGG	1 cut(s)	728
BbsI	GAAGAC	1 cut(s)	764
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	2 cut(s)	191, 1008
BceAI	ACGGC	3 cut(s)	291, 306, 651
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	135, 194
BfaI	CTAG	5 cut(s)	236, 567, 618, 729, 953
BfrI	CTTAAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	364
BglII	AGATCT	2 cut(s)	949, 955
BisI	GCNGC	2 cut(s)	664, 721
BlnI	CCTAGG	1 cut(s)	728
BlsI	GCNGC	2 cut(s)	665, 722
Bme1390I	CCNGG	3 cut(s)	45, 135, 194
Bme18I	GGWCC	2 cut(s)	92, 537
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	5 cut(s)	92, 537, 679, 893, 1047
BmiI	GGNNCC	2 cut(s)	680, 894
BmrFI	CCNGG	3 cut(s)	45, 135, 194
BmrI	ACTGGG	1 cut(s)	585
BmsI	GCATC	4 cut(s)	160, 169, 817, 861
BmuI	ACTGGG	1 cut(s)	585
BpiI	GAAGAC	1 cut(s)	764
BpmI	CTGGAG	3 cut(s)	66, 423, 944
BpuEI	CTTGAG	1 cut(s)	586
BpuMI	CCSGG	2 cut(s)	135, 194
Bsa29I	ATCGAT	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	31
BsaBI	GATNNNNATC	2 cut(s)	259, 954
BsaJI	CCNNGG	3 cut(s)	164, 307, 728
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	2 cut(s)	546, 979
Bse1I	ACTGG	6 cut(s)	352, 591, 627, 798, 961, 1062
Bse8I	GATNNNNATC	2 cut(s)	259, 954
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	164, 307, 728
BseGI	GGATG	4 cut(s)	175, 202, 511, 709
BseJI	GATNNNNATC	2 cut(s)	259, 954
BseLI	CCNNNNNNNGG	2 cut(s)	546, 979
BseNI	ACTGG	6 cut(s)	352, 591, 627, 798, 961, 1062
BseXI	GCAGC	1 cut(s)	675
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	4 cut(s)	192, 681, 895, 1049
BshVI	ATCGAT	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	134, 193, 701
BslI	CCNNNNNNNGG	2 cut(s)	546, 979
BsnI	GGCC	4 cut(s)	192, 681, 895, 1049
BspACI	CCGC	3 cut(s)	319, 436, 721
BspANI	GGCC	4 cut(s)	192, 681, 895, 1049
BspDI	ATCGAT	1 cut(s)	274
BspHI	TCATGA	2 cut(s)	81, 865
BspLI	GGNNCC	2 cut(s)	680, 894
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	6 cut(s)	112, 155, 384, 393, 804, 1001
BspTI	CTTAAG	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	723
BsrI	ACTGG	6 cut(s)	352, 591, 627, 798, 961, 1062
BssECI	CCNNGG	3 cut(s)	164, 307, 728
BssT1I	CCWWGG	1 cut(s)	728
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	290, 916
Bst6I	CTCTTC	1 cut(s)	992
BstAFI	CTTAAG	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	31
BstC8I	GCNNGC	2 cut(s)	832, 876
BstDEI	CTNAG	1 cut(s)	800
BstDSI	CCRYGG	2 cut(s)	164, 307
BstF5I	GGATG	4 cut(s)	175, 202, 511, 709
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 663, 669, 678
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	3 cut(s)	394, 765, 1041
BstSCI	CCNGG	3 cut(s)	43, 133, 192
BstV1I	GCAGC	1 cut(s)	675
BstV2I	GAAGAC	1 cut(s)	764
BstX2I	RGATCY	7 cut(s)	117, 160, 376, 796, 949, 955, 1006
BstYI	RGATCY	7 cut(s)	117, 160, 376, 796, 949, 955, 1006
Bsu15I	ATCGAT	1 cut(s)	274
BsuRI	GGCC	4 cut(s)	192, 681, 895, 1049
BsuTUI	ATCGAT	1 cut(s)	274
BtgI	CCRYGG	2 cut(s)	164, 307
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	175, 202, 511, 709
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	2 cut(s)	832, 876
CaiI	CAGNNNCTG	1 cut(s)	379
CciI	TCATGA	2 cut(s)	81, 865
Cfr13I	GGNCC	5 cut(s)	92, 537, 679, 893, 1047
ClaI	ATCGAT	1 cut(s)	274
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	9 cut(s)	82, 242, 369, 391, 445, 481, 762, 866, 1038
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	800
DraI	TTTAAA	1 cut(s)	882
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	992
EarI	CTCTTC	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	728
Eco47I	GGWCC	2 cut(s)	92, 537
Eco57I	CTGAAG	2 cut(s)	345, 401
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	728
EcoT22I	ATGCAT	1 cut(s)	1043
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	9 cut(s)	85, 245, 372, 394, 448, 484, 765, 869, 1041
FatI	CATG	9 cut(s)	81, 241, 368, 390, 444, 480, 761, 865, 1037
FauI	CCCGC	1 cut(s)	326
FauNDI	CATATG	1 cut(s)	1043
FblI	GTMKAC	2 cut(s)	247, 459
Fnu4HI	GCNGC	2 cut(s)	664, 721
FokI	GGATG	4 cut(s)	182, 209, 518, 716
Fsp4HI	GCNGC	2 cut(s)	664, 721
FspBI	CTAG	5 cut(s)	236, 567, 618, 729, 953
GluI	GCNGC	2 cut(s)	664, 721
GsuI	CTGGAG	3 cut(s)	66, 423, 944
HaeIII	GGCC	4 cut(s)	192, 681, 895, 1049
HapII	CCGG	3 cut(s)	134, 193, 701
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	9 cut(s)	85, 245, 372, 394, 448, 484, 765, 869, 1041
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	1014
HinfI	GANTC	6 cut(s)	16, 37, 276, 509, 563, 599
HpaII	CCGG	3 cut(s)	134, 193, 701
HphI	GGTGA	3 cut(s)	690, 732, 1045
Hpy166II	GTNNAC	3 cut(s)	103, 248, 460
Hpy188I	TCNGA	4 cut(s)	328, 381, 514, 850
Hpy188III	TCNNGA	9 cut(s)	82, 582, 618, 648, 866, 947, 953, 1004, 1010
Hpy8I	GTNNAC	3 cut(s)	103, 248, 460
HpyAV	CCTTC	4 cut(s)	376, 753, 759, 931
HpyCH4III	ACNGT	2 cut(s)	290, 916
HpyCH4IV	ACGT	2 cut(s)	30, 250
HpyCH4V	TGCA	3 cut(s)	204, 834, 1041
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 663, 669, 678
HpyF3I	CTNAG	1 cut(s)	800
HpySE526I	ACGT	2 cut(s)	30, 250
Hsp92II	CATG	9 cut(s)	85, 245, 372, 394, 448, 484, 765, 869, 1041
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	4 cut(s)	160, 169, 817, 861
MaeI	CTAG	5 cut(s)	236, 567, 618, 729, 953
MaeII	ACGT	2 cut(s)	30, 250
MaeIII	GTNAC	5 cut(s)	222, 284, 343, 431, 1033
MbiI	CCGCTC	1 cut(s)	723
MboII	GAAGA	4 cut(s)	83, 170, 769, 979
MflI	RGATCY	7 cut(s)	117, 160, 376, 796, 949, 955, 1006
MluCI	AATT	4 cut(s)	66, 469, 500, 515
MlyI	GAGTC	2 cut(s)	25, 593
MnlI	CCTC	5 cut(s)	132, 547, 748, 782, 937
Mph1103I	ATGCAT	1 cut(s)	1043
MseI	TTAA	2 cut(s)	114, 881
MslI	CAYNNNNRTG	1 cut(s)	1042
MspA1I	CMGCKG	1 cut(s)	438
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	3 cut(s)	134, 193, 701
MspR9I	CCNGG	3 cut(s)	45, 135, 194
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	179, 663, 669, 678
NciI	CCSGG	2 cut(s)	135, 194
NdeI	CATATG	1 cut(s)	1043
NlaIII	CATG	9 cut(s)	85, 245, 372, 394, 448, 484, 765, 869, 1041
NlaIV	GGNNCC	2 cut(s)	680, 894
NmuCI	GTSAC	3 cut(s)	343, 431, 1033
NsiI	ATGCAT	1 cut(s)	1043
NspI	RCATGY	3 cut(s)	394, 765, 1041
PagI	TCATGA	2 cut(s)	81, 865
PciI	ACATGT	1 cut(s)	761
PfeI	GAWTC	4 cut(s)	37, 276, 509, 563
PkrI	GCNGC	2 cut(s)	665, 722
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	2 cut(s)	24, 593
PpsI	GAGTC	2 cut(s)	24, 593
Ppu21I	YACGTR	1 cut(s)	31
PscI	ACATGT	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	2 cut(s)	680, 894
PspPI	GGNCC	5 cut(s)	92, 537, 679, 893, 1047
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	7 cut(s)	117, 160, 376, 796, 949, 955, 1006
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	1042
SaqAI	TTAA	2 cut(s)	114, 881
SatI	GCNGC	2 cut(s)	664, 721
Sau96I	GGNCC	5 cut(s)	92, 537, 679, 893, 1047
SchI	GAGTC	2 cut(s)	25, 593
ScrFI	CCNGG	3 cut(s)	45, 135, 194
SfaNI	GCATC	4 cut(s)	160, 169, 817, 861
SinI	GGWCC	2 cut(s)	92, 537
SmiMI	CAYNNNNRTG	1 cut(s)	1042
SmlI	CTYRAG	2 cut(s)	113, 601
SmoI	CTYRAG	2 cut(s)	113, 601
Sse9I	AATT	4 cut(s)	66, 469, 500, 515
SsiI	CCGC	3 cut(s)	319, 436, 721
SspI	AATATT	1 cut(s)	713
SspMI	CTAG	5 cut(s)	236, 567, 618, 729, 953
StyD4I	CCNGG	3 cut(s)	43, 133, 192
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	2 cut(s)	290, 916
TaiI	ACGT	2 cut(s)	33, 253
TaqI	TCGA	3 cut(s)	14, 274, 647
TaqII	GACCGA	3 cut(s)	109, 525, 932
TasI	AATT	4 cut(s)	66, 469, 500, 515
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	4 cut(s)	37, 276, 509, 563
Tru1I	TTAA	2 cut(s)	114, 881
Tru9I	TTAA	2 cut(s)	114, 881
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	3 cut(s)	343, 431, 1033
TseI	GCWGC	1 cut(s)	663
Tsp45I	GTSAC	3 cut(s)	343, 431, 1033
TspDTI	ATGAA	6 cut(s)	70, 98, 249, 357, 497, 786
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	352
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	92, 537
XapI	RAATTY	1 cut(s)	515
XbaI	TCTAGA	2 cut(s)	617, 952
XceI	RCATGY	3 cut(s)	394, 765, 1041
XmaJI	CCTAGG	1 cut(s)	728
XmiI	GTMKAC	2 cut(s)	247, 459
XspI	CTAG	5 cut(s)	236, 567, 618, 729, 953
Zsp2I	ATGCAT	1 cut(s)	1043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.