RchiOBHm_Chr3g0455851

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007007
Physical Location & Seq
Forward (+)
5428082 .. 5433048
4967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42276

Sequence Viewer

Length: 1035 bp
ATGAGTAGCCGATCGAGTCGTACTATCTACGTGGGGAATCTGCCTGGAGATATTCGTATGAGAGAAATTGAAGATTTATTCATGAAGTATGGACCGATTGTTGACATTGATCTTAAGATCCCTCCCAGACCACCGGGTTATGCTTTTATTGAGTTTGAAGATCCACGTGATGCTGATGATGCGATTTATGGCCGGGATGGTTGCAACTTTGACGGGTATCGCTTACGGGTTGAACTAGCACATGGTAGACGTGGATATTCATCATCAGCAGATCGATTCAGCAGTTACAGTCGTAGTAGCAGTAGCCGTGGAGCTTCCCGCCATTCTGACTATCGTGTGCTGGTCACTGGATTACCTGCTTCTGCTTCATGGCAGGATCTGAAGGATCACATGCGTCAAGCTGGAGATGTTTGTTTTTCGCAAGTGTTCCGTGACCGCCGTGGCATGACAGGAGTTGTAGACTACACAAATTACGATGACATGAAATATGCGATCAGGAAATTGGATGATTCTGAATTTAGAAATGCTTTTTCTCGGTCCTACATACGGGTCGAGGAATATGATTCTAGTCGTGGGTATTCCAGAAGCCCCAGTTATGACTCAAGGCAGAGCTACTCTAGAAGTCCCAGTCGTAGTCCATATGTGTCGAGAAGTCGCAGTCGCAGCCGTAGCTTTGGGGGCCAGAGCAGAAGCATATCACCGGATGTGGAATATTCCCGCCGCTCTCCTAGGTCTGCCTCACCTTTCCCTTCAAGTGGCCATATTGGCTCCTGTGGAGGTGTCCTAGGACTGGATCTTAGGAACTTGACGGGAAGTGGTGTTGATGCCTGCAACTCCTTAGGTTCAGATCTCTGTCAAGATCTAGATCTCCAGTTCGTTCTCCTTATTATGGAACTCTCTGCAGGTCACCATCAAGATCCAGAAGCTTATCCCGTTAGCTTGGTGACATGCATATGTGCCAAGTGCCTTCTCAGTCCTTTTGGTGAACTGGACACCACATGGAAGTTTGGAACGGAAGTTAGGAACTTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04657 ko05168 map03040 map04657 map05168
Pfam Domains
Protein Families
RRM_1

Protein Analysis

344

Amino Acids

38.6

Weight (kDa)

8.06

Isoelectric Point (pI)

77.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 76 4.4e-16 RNA recognition motif
RRM_1 PF00076 113 - 175 1.8e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 364, 893
AccBSI CCGCTC 1 cut(s) 723
AccI GTMKAC 2 cut(s) 247, 459
AciI CCGC 4 cut(s) 319, 436, 718, 721
AclWI GGATC 6 cut(s) 112, 155, 384, 393, 801, 911
AcoI YGGCCR 2 cut(s) 190, 757
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 401
AcvI CACGTG 1 cut(s) 167
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 4 cut(s) 546, 755, 790, 889
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 4 cut(s) 71, 158, 233, 753
AjiI CACGTC 1 cut(s) 251
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 6 cut(s) 314, 401, 612, 672, 926, 939
AluI AGCT 6 cut(s) 314, 401, 612, 672, 926, 939
AlwI GGATC 6 cut(s) 112, 155, 384, 393, 801, 911
AlwNI CAGNNNCTG 1 cut(s) 379
AoxI GGCC 3 cut(s) 190, 679, 757
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 1 cut(s) 515
AspA2I CCTAGG 2 cut(s) 728, 784
AspS9I GGNCC 3 cut(s) 92, 537, 679
AsuC2I CCSGG 2 cut(s) 135, 194
AsuHPI GGTGA 5 cut(s) 690, 732, 899, 955, 995
AvaII GGWCC 2 cut(s) 92, 537
AvrII CCTAGG 2 cut(s) 728, 784
AxyI CCTNAGG 1 cut(s) 838
BalI TGGCCA 1 cut(s) 759
BbrPI CACGTG 1 cut(s) 167
BbvI GCAGC 1 cut(s) 675
BccI CCATC 2 cut(s) 191, 918
BceAI ACGGC 3 cut(s) 291, 423, 651
BciT130I CCWGG 1 cut(s) 45
BcnI CCSGG 2 cut(s) 135, 194
BfaI CTAG 6 cut(s) 236, 567, 618, 729, 785, 863
BfmI CTRYAG 1 cut(s) 900
BfrI CTTAAG 1 cut(s) 113
BfuAI ACCTGC 2 cut(s) 364, 893
BglI GCCNNNNNGGC 1 cut(s) 765
BglII AGATCT 3 cut(s) 847, 859, 865
BisI GCNGC 2 cut(s) 664, 721
BlnI CCTAGG 2 cut(s) 728, 784
BlsI GCNGC 2 cut(s) 665, 722
Bme1390I CCNGG 3 cut(s) 45, 135, 194
Bme18I GGWCC 2 cut(s) 92, 537
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 92, 537, 679
BmiI GGNNCC 2 cut(s) 680, 769
BmrFI CCNGG 3 cut(s) 45, 135, 194
BmrI ACTGGG 2 cut(s) 585, 621
BmsI GCATC 3 cut(s) 160, 169, 814
BmuI ACTGGG 2 cut(s) 585, 621
BpmI CTGGAG 3 cut(s) 66, 423, 854
BpuEI CTTGAG 1 cut(s) 586
BpuMI CCSGG 2 cut(s) 135, 194
Bsa29I ATCGAT 1 cut(s) 274
BsaAI YACGTR 2 cut(s) 31, 167
BsaBI GATNNNNATC 2 cut(s) 259, 864
BsaJI CCNNGG 4 cut(s) 307, 439, 728, 784
BsaWI WCCGGW 1 cut(s) 700
Bsc4I CCNNNNNNNGG 4 cut(s) 546, 755, 790, 889
Bse1I ACTGG 6 cut(s) 352, 591, 627, 795, 871, 993
Bse21I CCTNAGG 1 cut(s) 838
Bse8I GATNNNNATC 2 cut(s) 259, 864
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 4 cut(s) 307, 439, 728, 784
BseGI GGATG 3 cut(s) 202, 511, 709
BseJI GATNNNNATC 2 cut(s) 259, 864
BseLI CCNNNNNNNGG 4 cut(s) 546, 755, 790, 889
BseMII CTCAG 1 cut(s) 985
BseNI ACTGG 6 cut(s) 352, 591, 627, 795, 871, 993
BseXI GCAGC 1 cut(s) 675
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 3 cut(s) 192, 681, 759
BshVI ATCGAT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 14
BsiSI CCGG 3 cut(s) 134, 193, 701
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 4 cut(s) 546, 755, 790, 889
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 3 cut(s) 192, 681, 759
BspACI CCGC 4 cut(s) 319, 436, 718, 721
BspANI GGCC 3 cut(s) 192, 681, 759
BspCNI CTCAG 1 cut(s) 984
BspDI ATCGAT 1 cut(s) 274
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 680, 769
BspMAI CTGCAG 1 cut(s) 904
BspMI ACCTGC 2 cut(s) 364, 893
BspPI GGATC 6 cut(s) 112, 155, 384, 393, 801, 911
BspTI CTTAAG 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 723
BsrI ACTGG 6 cut(s) 352, 591, 627, 795, 871, 993
BssECI CCNNGG 4 cut(s) 307, 439, 728, 784
BssT1I CCWWGG 2 cut(s) 728, 784
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 290
BstAFI CTTAAG 1 cut(s) 113
BstBAI YACGTR 2 cut(s) 31, 167
BstC8I GCNNGC 1 cut(s) 829
BstDEI CTNAG 3 cut(s) 797, 838, 971
BstDSI CCRYGG 2 cut(s) 307, 439
BstEII GGTNACC 1 cut(s) 905
BstF5I GGATG 3 cut(s) 202, 511, 709
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 5 cut(s) 179, 663, 669, 678, 765
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 2 cut(s) 394, 951
BstPI GGTNACC 1 cut(s) 905
BstSCI CCNGG 3 cut(s) 43, 133, 192
BstSFI CTRYAG 1 cut(s) 900
BstV1I GCAGC 1 cut(s) 675
BstX2I RGATCY 8 cut(s) 117, 160, 376, 793, 847, 859, 865, 916
BstYI RGATCY 8 cut(s) 117, 160, 376, 793, 847, 859, 865, 916
Bsu15I ATCGAT 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 838
BsuRI GGCC 3 cut(s) 192, 681, 759
BsuTUI ATCGAT 1 cut(s) 274
BtgI CCRYGG 2 cut(s) 307, 439
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 3 cut(s) 202, 511, 709
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 2 cut(s) 364, 893
Cac8I GCNNGC 1 cut(s) 829
CaiI CAGNNNCTG 1 cut(s) 379
CciI TCATGA 1 cut(s) 81
Cfr13I GGNCC 3 cut(s) 92, 537, 679
ClaI ATCGAT 1 cut(s) 274
CseI GACGC 1 cut(s) 383
Csp6I GTAC 1 cut(s) 21
CviAII CATG 8 cut(s) 82, 242, 369, 391, 445, 481, 948, 999
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 3 cut(s) 797, 838, 971
EaeI YGGCCR 2 cut(s) 190, 757
Eco130I CCWWGG 2 cut(s) 728, 784
Eco47I GGWCC 2 cut(s) 92, 537
Eco57I CTGAAG 1 cut(s) 401
Eco72I CACGTG 1 cut(s) 167
Eco81I CCTNAGG 1 cut(s) 838
Eco91I GGTNACC 1 cut(s) 905
EcoO65I GGTNACC 1 cut(s) 905
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 2 cut(s) 728, 784
EcoT22I ATGCAT 1 cut(s) 953
ErhI CCWWGG 2 cut(s) 728, 784
FaeI CATG 8 cut(s) 85, 245, 372, 394, 448, 484, 951, 1002
FaqI GGGAC 1 cut(s) 609
FatI CATG 8 cut(s) 81, 241, 368, 390, 444, 480, 947, 998
FauI CCCGC 2 cut(s) 326, 725
FauNDI CATATG 2 cut(s) 640, 953
FblI GTMKAC 2 cut(s) 247, 459
Fnu4HI GCNGC 2 cut(s) 664, 721
FokI GGATG 3 cut(s) 209, 518, 716
Fsp4HI GCNGC 2 cut(s) 664, 721
FspBI CTAG 6 cut(s) 236, 567, 618, 729, 785, 863
GluI GCNGC 2 cut(s) 664, 721
GsuI CTGGAG 3 cut(s) 66, 423, 854
HaeIII GGCC 3 cut(s) 192, 681, 759
HapII CCGG 3 cut(s) 134, 193, 701
HgaI GACGC 1 cut(s) 383
Hin1II CATG 8 cut(s) 85, 245, 372, 394, 448, 484, 951, 1002
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 924
HinfI GANTC 6 cut(s) 16, 37, 276, 509, 563, 599
HpaII CCGG 3 cut(s) 134, 193, 701
HphI GGTGA 5 cut(s) 690, 732, 899, 955, 995
Hpy166II GTNNAC 4 cut(s) 103, 248, 460, 986
Hpy188I TCNGA 4 cut(s) 328, 381, 514, 847
Hpy188III TCNNGA 9 cut(s) 82, 496, 582, 618, 648, 857, 863, 914, 920
Hpy8I GTNNAC 4 cut(s) 103, 248, 460, 986
HpyAV CCTTC 3 cut(s) 376, 759, 977
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 3 cut(s) 30, 166, 250
HpyCH4V TGCA 4 cut(s) 204, 831, 902, 951
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 663, 669, 678, 765
HpyF3I CTNAG 3 cut(s) 797, 838, 971
HpySE526I ACGT 3 cut(s) 30, 166, 250
Hsp92II CATG 8 cut(s) 85, 245, 372, 394, 448, 484, 951, 1002
LmnI GCTCC 2 cut(s) 311, 773
Lsp1109I GCAGC 1 cut(s) 675
LweI GCATC 3 cut(s) 160, 169, 814
MaeI CTAG 6 cut(s) 236, 567, 618, 729, 785, 863
MaeII ACGT 3 cut(s) 30, 166, 250
MaeIII GTNAC 5 cut(s) 284, 343, 431, 905, 943
MbiI CCGCTC 1 cut(s) 723
MboII GAAGA 2 cut(s) 83, 170
MflI RGATCY 8 cut(s) 117, 160, 376, 793, 847, 859, 865, 916
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 4 cut(s) 66, 469, 500, 515
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 2 cut(s) 25, 593
MnlI CCTC 4 cut(s) 132, 547, 748, 770
Mox20I TGGCCA 1 cut(s) 759
Mph1103I ATGCAT 1 cut(s) 953
MscI TGGCCA 1 cut(s) 759
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 952
Msp20I TGGCCA 1 cut(s) 759
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 3 cut(s) 134, 193, 701
MspR9I CCNGG 3 cut(s) 45, 135, 194
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 5 cut(s) 179, 663, 669, 678, 765
NciI CCSGG 2 cut(s) 135, 194
NdeI CATATG 2 cut(s) 640, 953
NlaIII CATG 8 cut(s) 85, 245, 372, 394, 448, 484, 951, 1002
NlaIV GGNNCC 2 cut(s) 680, 769
NmuCI GTSAC 4 cut(s) 343, 431, 905, 943
NsiI ATGCAT 1 cut(s) 953
NspI RCATGY 2 cut(s) 394, 951
PagI TCATGA 1 cut(s) 81
PfeI GAWTC 4 cut(s) 37, 276, 509, 563
PkrI GCNGC 2 cut(s) 665, 722
Ple19I CGATCG 1 cut(s) 14
PleI GAGTC 2 cut(s) 24, 593
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 2 cut(s) 24, 593
Ppu21I YACGTR 2 cut(s) 31, 167
Psp6I CCWGG 1 cut(s) 43
PspCI CACGTG 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 905
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 680, 769
PspPI GGNCC 3 cut(s) 92, 537, 679
PstI CTGCAG 1 cut(s) 904
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 8 cut(s) 117, 160, 376, 793, 847, 859, 865, 916
PvuI CGATCG 1 cut(s) 14
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 952
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 664, 721
Sau96I GGNCC 3 cut(s) 92, 537, 679
SchI GAGTC 2 cut(s) 25, 593
ScrFI CCNGG 3 cut(s) 45, 135, 194
SfaNI GCATC 3 cut(s) 160, 169, 814
SfcI CTRYAG 1 cut(s) 900
SinI GGWCC 2 cut(s) 92, 537
SmiMI CAYNNNNRTG 1 cut(s) 952
SmlI CTYRAG 2 cut(s) 113, 601
SmoI CTYRAG 2 cut(s) 113, 601
Sse9I AATT 4 cut(s) 66, 469, 500, 515
SsiI CCGC 4 cut(s) 319, 436, 718, 721
SspI AATATT 1 cut(s) 713
SspMI CTAG 6 cut(s) 236, 567, 618, 729, 785, 863
StyD4I CCNGG 3 cut(s) 43, 133, 192
StyI CCWWGG 2 cut(s) 728, 784
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 3 cut(s) 33, 169, 253
TaqI TCGA 4 cut(s) 14, 274, 552, 647
TaqII GACCGA 2 cut(s) 109, 525
TasI AATT 4 cut(s) 66, 469, 500, 515
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 4 cut(s) 37, 276, 509, 563
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 4 cut(s) 343, 431, 905, 943
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 4 cut(s) 343, 431, 905, 943
TspDTI ATGAA 5 cut(s) 70, 98, 249, 357, 497
TspGWI ACGGA 2 cut(s) 419, 1028
TspRI CASTG 1 cut(s) 352
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 92, 537
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 2 cut(s) 617, 862
XceI RCATGY 2 cut(s) 394, 951
XmaJI CCTAGG 2 cut(s) 728, 784
XmiI GTMKAC 2 cut(s) 247, 459
XspI CTAG 6 cut(s) 236, 567, 618, 729, 785, 863
Zsp2I ATGCAT 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.