Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Reverse (-)

45161605 .. 45166299

Gene Structure 4695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTAGCCGATCGAGTCGTACTATCTACGTGGGGAATCTGCCTGGAGATATTCGTATGAGAGAAATTGAAGATCTATTCATGAAGTATGGACCGATTGTTGACATTGATCTTAAGATCCCTCCCAGACCACCGGGTTATGCTTTTATTGAGTTTGAAGATCCGCGTGATGCTGATGATGCGATTTATGGCCGGGATGGTTGCAACTTTGACGGGTATCGCTTACGGGTTGAACTAGCACATGGTAGACGTGGATATTCATCATCAGCAGATCGATTCAGCAGTTACAGTCATAGTAGCAGTAGCCGTGGAGCCTCCCGCCGTTCTGACTATCGTGTGCTGGTCACTGGATTACCTGCTTCTGCTTCATGGCAGGATCTGAAGGATCACATGCGTCAAGCTGGTGATGTTTGTTTTTCGCAAGTGTTCCGTGACCGCCGTGGCATGACGGGAGTTGTAGACTACACAAATTATGATGACATGAAATATGCGATCAGGAAATTGGATGATTCTGAATTTAGAAATGCTTTTTCTCGGTCCTACATACGGGTCGAGGAATATGATTCTAGTCATGGGTATTCCAGAAGCCCCAGTTATGACTCAAGGCGGAGCTACTCTAGAAGTCCCAGTTGCAGTCCATATCTGTCGAGAAGTCGCAGTCGCAGCCGTAGCTTTGGGGGCCAGAGCAGAAGCATATCACCGGATGTGGACTATTCACGTCGCTCTCCTAGGTCTGCCTCACCTTCCCCTTCAAGATTGGCTCCTGTGGAGGTGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

259

Amino Acids

29.5

Weight (kDa)

9.41

Isoelectric Point (pI)

89.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 76	2.7e-16	RNA recognition motif
RRM_1	PF00076	113 - 175	1.1e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccI	GTMKAC	2 cut(s)	247, 459
AccII	CGCG	1 cut(s)	166
AciI	CCGC	4 cut(s)	164, 319, 436, 607
AclWI	GGATC	4 cut(s)	112, 155, 384, 393
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	546
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	71, 158, 233, 753
AjiI	CACGTC	2 cut(s)	251, 719
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	3 cut(s)	401, 612, 672
AluI	AGCT	3 cut(s)	401, 612, 672
AlwI	GGATC	4 cut(s)	112, 155, 384, 393
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	2 cut(s)	190, 679
ApeKI	GCWGC	1 cut(s)	663
ApoI	RAATTY	1 cut(s)	515
AspA2I	CCTAGG	1 cut(s)	728
AspS9I	GGNCC	3 cut(s)	92, 537, 679
AsuC2I	CCSGG	2 cut(s)	135, 194
AsuHPI	GGTGA	3 cut(s)	416, 690, 732
AvaII	GGWCC	2 cut(s)	92, 537
AvrII	CCTAGG	1 cut(s)	728
BbvI	GCAGC	1 cut(s)	675
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	4 cut(s)	291, 306, 423, 651
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	135, 194
BfaI	CTAG	5 cut(s)	236, 567, 618, 729, 778
BfrI	CTTAAG	1 cut(s)	113
BfuAI	ACCTGC	1 cut(s)	364
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	664
BlnI	CCTAGG	1 cut(s)	728
BlsI	GCNGC	1 cut(s)	665
Bme1390I	CCNGG	3 cut(s)	45, 135, 194
Bme18I	GGWCC	2 cut(s)	92, 537
BmgBI	CACGTC	2 cut(s)	251, 719
BmgT120I	GGNCC	3 cut(s)	92, 537, 679
BmiI	GGNNCC	3 cut(s)	313, 680, 762
BmrFI	CCNGG	3 cut(s)	45, 135, 194
BmrI	ACTGGG	2 cut(s)	585, 621
BmsI	GCATC	2 cut(s)	160, 169
BmuI	ACTGGG	2 cut(s)	585, 621
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	586
BpuMI	CCSGG	2 cut(s)	135, 194
Bsa29I	ATCGAT	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	259
BsaJI	CCNNGG	3 cut(s)	307, 439, 728
BsaWI	WCCGGW	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse1I	ACTGG	3 cut(s)	352, 591, 627
Bse8I	GATNNNNATC	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	3 cut(s)	307, 439, 728
BseGI	GGATG	3 cut(s)	202, 511, 709
BseJI	GATNNNNATC	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	352, 591, 627
BseXI	GCAGC	1 cut(s)	675
Bsh1236I	CGCG	1 cut(s)	166
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	192, 681
BshVI	ATCGAT	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	14
BsiSI	CCGG	3 cut(s)	134, 193, 701
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	192, 681
Bsp143I	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
BspACI	CCGC	4 cut(s)	164, 319, 436, 607
BspANI	GGCC	2 cut(s)	192, 681
BspDI	ATCGAT	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	313, 680, 762
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	4 cut(s)	112, 155, 384, 393
BspTI	CTTAAG	1 cut(s)	113
BsrI	ACTGG	3 cut(s)	352, 591, 627
BssECI	CCNNGG	3 cut(s)	307, 439, 728
BssMI	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
BssT1I	CCWWGG	1 cut(s)	728
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	290
BstAFI	CTTAAG	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	31
BstDSI	CCRYGG	2 cut(s)	307, 439
BstF5I	GGATG	3 cut(s)	202, 511, 709
BstFNI	CGCG	1 cut(s)	166
BstKTI	GATC	9 cut(s)	14, 76, 112, 120, 163, 274, 379, 388, 495
BstMBI	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 663, 669, 678
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	3 cut(s)	43, 133, 192
BstUI	CGCG	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	675
BstX2I	RGATCY	4 cut(s)	73, 117, 160, 376
BstYI	RGATCY	4 cut(s)	73, 117, 160, 376
Bsu15I	ATCGAT	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	192, 681
BsuTUI	ATCGAT	1 cut(s)	274
BtgI	CCRYGG	2 cut(s)	307, 439
BtrI	CACGTC	2 cut(s)	251, 719
BtsCI	GGATG	3 cut(s)	202, 511, 709
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	379
CciI	TCATGA	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	92, 537, 679
ClaI	ATCGAT	1 cut(s)	274
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	7 cut(s)	82, 242, 369, 391, 445, 481, 572
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	9 cut(s)	13, 75, 111, 119, 162, 273, 378, 387, 494
DpnII	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
EaeI	YGGCCR	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	622
Eco130I	CCWWGG	1 cut(s)	728
Eco47I	GGWCC	2 cut(s)	92, 537
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	728
ErhI	CCWWGG	1 cut(s)	728
FaeI	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 575
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	7 cut(s)	81, 241, 368, 390, 444, 480, 571
FauI	CCCGC	1 cut(s)	326
FblI	GTMKAC	2 cut(s)	247, 459
Fnu4HI	GCNGC	1 cut(s)	664
FokI	GGATG	3 cut(s)	209, 518, 716
Fsp4HI	GCNGC	1 cut(s)	664
FspBI	CTAG	5 cut(s)	236, 567, 618, 729, 778
GluI	GCNGC	1 cut(s)	664
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	192, 681
HapII	CCGG	3 cut(s)	134, 193, 701
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 575
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	6 cut(s)	16, 37, 276, 509, 563, 599
HpaII	CCGG	3 cut(s)	134, 193, 701
HphI	GGTGA	3 cut(s)	416, 690, 732
Hpy166II	GTNNAC	4 cut(s)	103, 248, 460, 709
Hpy188I	TCNGA	3 cut(s)	328, 381, 514
Hpy188III	TCNNGA	6 cut(s)	82, 496, 582, 618, 648, 753
Hpy8I	GTNNAC	4 cut(s)	103, 248, 460, 709
Hpy99I	CGWCG	1 cut(s)	723
HpyAV	CCTTC	3 cut(s)	376, 753, 759
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	3 cut(s)	30, 250, 718
HpyCH4V	TGCA	2 cut(s)	204, 633
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 663, 669, 678
HpySE526I	ACGT	3 cut(s)	30, 250, 718
Hsp92II	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 575
Kzo9I	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
LmnI	GCTCC	3 cut(s)	311, 609, 766
Lsp1109I	GCAGC	1 cut(s)	675
LweI	GCATC	2 cut(s)	160, 169
MaeI	CTAG	5 cut(s)	236, 567, 618, 729, 778
MaeII	ACGT	3 cut(s)	30, 250, 718
MaeIII	GTNAC	3 cut(s)	284, 343, 431
MalI	GATC	9 cut(s)	13, 75, 111, 119, 162, 273, 378, 387, 494
MboI	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
MboII	GAAGA	2 cut(s)	83, 170
MflI	RGATCY	4 cut(s)	73, 117, 160, 376
MluCI	AATT	4 cut(s)	66, 469, 500, 515
MlyI	GAGTC	2 cut(s)	25, 593
MnlI	CCTC	5 cut(s)	132, 325, 547, 748, 763
MseI	TTAA	1 cut(s)	114
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	3 cut(s)	134, 193, 701
MspR9I	CCNGG	3 cut(s)	45, 135, 194
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	166
MwoI	GCNNNNNNNGC	4 cut(s)	179, 663, 669, 678
NciI	CCSGG	2 cut(s)	135, 194
NdeII	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
NlaIII	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 575
NlaIV	GGNNCC	3 cut(s)	313, 680, 762
NmuCI	GTSAC	2 cut(s)	343, 431
NspI	RCATGY	1 cut(s)	394
PagI	TCATGA	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	37, 276, 509, 563
PkrI	GCNGC	1 cut(s)	665
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	2 cut(s)	24, 593
PpsI	GAGTC	2 cut(s)	24, 593
Ppu21I	YACGTR	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	3 cut(s)	313, 680, 762
PspPI	GGNCC	3 cut(s)	92, 537, 679
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	4 cut(s)	73, 117, 160, 376
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	664
Sau3AI	GATC	9 cut(s)	11, 73, 109, 117, 160, 271, 376, 385, 492
Sau96I	GGNCC	3 cut(s)	92, 537, 679
SchI	GAGTC	2 cut(s)	25, 593
ScrFI	CCNGG	3 cut(s)	45, 135, 194
SfaNI	GCATC	2 cut(s)	160, 169
SinI	GGWCC	2 cut(s)	92, 537
SmlI	CTYRAG	2 cut(s)	113, 601
SmoI	CTYRAG	2 cut(s)	113, 601
Sse9I	AATT	4 cut(s)	66, 469, 500, 515
SsiI	CCGC	4 cut(s)	164, 319, 436, 607
SspMI	CTAG	5 cut(s)	236, 567, 618, 729, 778
StyD4I	CCNGG	3 cut(s)	43, 133, 192
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	3 cut(s)	33, 253, 721
TaqI	TCGA	4 cut(s)	14, 274, 552, 647
TaqII	GACCGA	2 cut(s)	109, 525
TasI	AATT	4 cut(s)	66, 469, 500, 515
TfiI	GAWTC	4 cut(s)	37, 276, 509, 563
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	343, 431
TseI	GCWGC	1 cut(s)	663
Tsp45I	GTSAC	2 cut(s)	343, 431
TspDTI	ATGAA	5 cut(s)	70, 98, 249, 357, 497
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	352
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	92, 537
XapI	RAATTY	1 cut(s)	515
XbaI	TCTAGA	1 cut(s)	617
XceI	RCATGY	1 cut(s)	394
XmaJI	CCTAGG	1 cut(s)	728
XmiI	GTMKAC	2 cut(s)	247, 459
XspI	CTAG	5 cut(s)	236, 567, 618, 729, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.