Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Forward (+)

28340490 .. 28345493

Gene Structure 5004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G320000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGTAGCCGATCGAGTCGCACTATCTACGTCGGCAATCTGCCTGGGGATATTCGTATGAGAGAAATTGAAGATTTGTTCATGAAGTACGGGCCCATCGTCGACATTGATCTCAAAGTCCCGCCGAGACCACCAGGTTATGCTTTTATTGAGTTTGAAGATGCTCGAGATGCTGATGATGCAATTTATGGCCGGGATGGGTACAACTTTGATGGGTATCGATTACGGGTTGAACTAGCGCATGGTGGACGAGGACACTCATCGTCAATGGATCGATACAGCAGTTACAGTCATAGTAGCAGTAGCCGTGGAGCTTCCCGGCGCTCTGACTATCGTGTACTGGTCACTGGATTGCCTCCTTCTGCTTCATGGCAGGATCTGAAAGACCACATGCGTCGAGCTGGAGATGTCTGTTTCTCCCAAGTGTTCCGTGATCAGGGTGGCATGACGGGAATTGTAGACTACACAAACTATGACGATATGAGATATGCTATCCGGAAACTTGATGACTCTGAATTCAAAAATGCTTTTTCTCGGGCTTACATACGGGTGAAGGAATATGATTCTAGACGTAGCTATTCCAGAAGCCCTAGTTATGACATGAGACGGAGCTACTCTAGAAGCCCCAGTCGTAGTCCATATACGTCGAGAAGTCAAAGCCGCAGTCGCAGCTATAGCTATGGTGGCCGAATCAGAAGCATATCACCGGAGGCAAAATATTTGCACTGCTCTCCATCAGTATCTTATCCAAGGTCTGTCTCACGTTCCCGCGCAAGATCTCGGACAAGATCTAGGTCTCCAGTTTCTTCTGCTAGTCCCAGGACTCTGAGCAGATCCAAGTCAAGATCCAGAAGCTTATCCCGGTCGCTTTCACCTTCTGCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

296

Amino Acids

33.72

Weight (kDa)

10.31

Isoelectric Point (pI)

91.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	102, 459
AccII	CGCG	1 cut(s)	771
AccIII	TCCGGA	1 cut(s)	495
AciI	CCGC	3 cut(s)	122, 661, 769
AclWI	GGATC	4 cut(s)	279, 384, 828, 840
AcoI	YGGCCR	2 cut(s)	190, 685
AcsI	RAATTY	1 cut(s)	515
AfaI	GTAC	3 cut(s)	89, 203, 339
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	4 cut(s)	71, 158, 233, 520
AjnI	CCWGG	3 cut(s)	43, 133, 818
AluBI	AGCT	7 cut(s)	314, 401, 576, 612, 672, 678, 855
AluI	AGCT	7 cut(s)	314, 401, 576, 612, 672, 678, 855
Alw26I	GTCTC	4 cut(s)	121, 598, 763, 801
AlwI	GGATC	4 cut(s)	279, 384, 828, 840
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	2 cut(s)	165, 534
Aor13HI	TCCGGA	1 cut(s)	495
AoxI	GGCC	3 cut(s)	92, 190, 685
ApaI	GGGCCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	669
ApoI	RAATTY	1 cut(s)	515
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspLEI	GCGC	3 cut(s)	241, 324, 773
AspS9I	GGNCC	2 cut(s)	92, 93
AsuC2I	CCSGG	3 cut(s)	194, 319, 862
AsuHPI	GGTGA	3 cut(s)	562, 696, 864
AvaI	CYCGRG	2 cut(s)	165, 534
BaeGI	GKGCMC	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BanII	GRGCYC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	681
BccI	CCATC	4 cut(s)	104, 191, 206, 742
BceAI	ACGGC	1 cut(s)	291
BciT130I	CCWGG	3 cut(s)	45, 135, 820
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	3 cut(s)	194, 319, 862
BcoDI	GTCTC	4 cut(s)	121, 598, 763, 801
BfaI	CTAG	6 cut(s)	236, 567, 591, 618, 792, 813
BfmI	CTRYAG	1 cut(s)	673
BfoI	RGCGCY	1 cut(s)	325
BglII	AGATCT	2 cut(s)	776, 788
BisI	GCNGC	2 cut(s)	661, 670
BlsI	GCNGC	2 cut(s)	662, 671
Bme1390I	CCNGG	6 cut(s)	45, 135, 194, 319, 820, 862
BmeT110I	CYCGRG	2 cut(s)	165, 534
BmgT120I	GGNCC	2 cut(s)	92, 93
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	6 cut(s)	45, 135, 194, 319, 820, 862
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	3 cut(s)	151, 160, 169
BmuI	ACTGGG	1 cut(s)	621
BpmI	CTGGAG	2 cut(s)	423, 783
BpuMI	CCSGG	3 cut(s)	194, 319, 862
Bsa29I	ATCGAT	2 cut(s)	220, 274
BsaBI	GATNNNNATC	1 cut(s)	216
BsaI	GGTCTC	2 cut(s)	121, 801
BsaJI	CCNNGG	4 cut(s)	44, 307, 749, 818
BsaWI	WCCGGW	2 cut(s)	495, 706
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	4 cut(s)	345, 352, 627, 800
Bse8I	GATNNNNATC	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	495
BseBI	CCWGG	3 cut(s)	45, 135, 820
BseCI	ATCGAT	2 cut(s)	220, 274
BseDI	CCNNGG	4 cut(s)	44, 307, 749, 818
BseGI	GGATG	1 cut(s)	202
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	4 cut(s)	345, 352, 627, 800
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	771
Bsh1285I	CGRYCG	2 cut(s)	14, 866
BshFI	GGCC	3 cut(s)	94, 192, 687
BshVI	ATCGAT	2 cut(s)	220, 274
BsiEI	CGRYCG	2 cut(s)	14, 866
BsiHKCI	CYCGRG	2 cut(s)	165, 534
BsiSI	CCGG	5 cut(s)	193, 319, 496, 707, 862
BslFI	GGGAC	2 cut(s)	104, 801
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	4 cut(s)	121, 598, 763, 801
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	2 cut(s)	104, 801
BsnI	GGCC	3 cut(s)	94, 192, 687
Bso31I	GGTCTC	2 cut(s)	121, 801
BsoBI	CYCGRG	2 cut(s)	165, 534
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp13I	TCCGGA	1 cut(s)	495
Bsp143I	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
BspACI	CCGC	3 cut(s)	122, 661, 769
BspANI	GGCC	3 cut(s)	94, 192, 687
BspCNI	CTCAG	1 cut(s)	819
BspDI	ATCGAT	2 cut(s)	220, 274
BspEI	TCCGGA	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	771
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	4 cut(s)	279, 384, 828, 840
BspTNI	GGTCTC	2 cut(s)	121, 801
BsrI	ACTGG	4 cut(s)	345, 352, 627, 800
BssECI	CCNNGG	4 cut(s)	44, 307, 749, 818
BssMI	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	3 cut(s)	45, 135, 820
Bst4CI	ACNGT	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	827
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	1 cut(s)	771
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	3 cut(s)	241, 324, 773
BstKTI	GATC	9 cut(s)	14, 112, 274, 379, 436, 779, 791, 836, 848
BstMAI	GTCTC	4 cut(s)	121, 598, 763, 801
BstMBI	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
BstMCI	CGRYCG	2 cut(s)	14, 866
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 179, 666, 669, 675, 684
BstNI	CCWGG	3 cut(s)	45, 135, 820
BstNSI	RCATGY	1 cut(s)	394
BstSCI	CCNGG	6 cut(s)	43, 133, 192, 317, 818, 860
BstSFI	CTRYAG	1 cut(s)	673
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	771
BstV1I	GCAGC	1 cut(s)	681
BstX2I	RGATCY	5 cut(s)	376, 776, 788, 833, 845
BstYI	RGATCY	5 cut(s)	376, 776, 788, 833, 845
Bsu15I	ATCGAT	2 cut(s)	220, 274
BsuRI	GGCC	3 cut(s)	94, 192, 687
BsuTUI	ATCGAT	2 cut(s)	220, 274
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	1 cut(s)	202
BtsI	GCAGTG	1 cut(s)	724
BtsIMutI	CAGTG	2 cut(s)	345, 724
CaiI	CAGNNNCTG	1 cut(s)	379
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	3 cut(s)	241, 324, 773
Cfr13I	GGNCC	2 cut(s)	92, 93
ClaI	ATCGAT	2 cut(s)	220, 274
CseI	GACGC	1 cut(s)	383
CsiI	ACCWGGT	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	88, 202, 338
CviAII	CATG	6 cut(s)	82, 242, 369, 391, 445, 601
CviQI	GTAC	3 cut(s)	88, 202, 338
DdeI	CTNAG	1 cut(s)	827
DpnI	GATC	9 cut(s)	13, 111, 273, 378, 435, 778, 790, 835, 847
DpnII	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
EaeI	YGGCCR	2 cut(s)	190, 685
Eco130I	CCWWGG	1 cut(s)	749
Eco24I	GRGCYC	1 cut(s)	96
Eco31I	GGTCTC	2 cut(s)	121, 801
Eco88I	CYCGRG	2 cut(s)	165, 534
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	43, 133, 818
EcoT14I	CCWWGG	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	749
Esp3I	CGTCTC	1 cut(s)	598
FaeI	CATG	6 cut(s)	85, 245, 372, 394, 448, 604
FaqI	GGGAC	2 cut(s)	104, 801
FatI	CATG	6 cut(s)	81, 241, 368, 390, 444, 600
FauI	CCCGC	2 cut(s)	129, 776
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	2 cut(s)	102, 459
Fnu4HI	GCNGC	2 cut(s)	661, 670
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	661, 670
FspBI	CTAG	6 cut(s)	236, 567, 591, 618, 792, 813
GlaI	GCGC	3 cut(s)	240, 323, 772
GluI	GCNGC	2 cut(s)	661, 670
GsuI	CTGGAG	2 cut(s)	423, 783
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	3 cut(s)	94, 192, 687
HapII	CCGG	5 cut(s)	193, 319, 496, 707, 862
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	3 cut(s)	241, 324, 773
Hin1II	CATG	6 cut(s)	85, 245, 372, 394, 448, 604
Hin6I	GCGC	3 cut(s)	239, 322, 771
HinP1I	GCGC	3 cut(s)	239, 322, 771
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	853
HinfI	GANTC	5 cut(s)	16, 509, 563, 690, 823
HpaII	CCGG	5 cut(s)	193, 319, 496, 707, 862
HphI	GGTGA	3 cut(s)	562, 696, 864
Hpy166II	GTNNAC	4 cut(s)	103, 248, 338, 460
Hpy188I	TCNGA	6 cut(s)	328, 381, 514, 695, 783, 828
Hpy188III	TCNNGA	9 cut(s)	82, 167, 496, 567, 582, 618, 648, 843, 849
Hpy8I	GTNNAC	4 cut(s)	103, 248, 338, 460
Hpy99I	CGWCG	4 cut(s)	35, 104, 399, 649
HpyAV	CCTTC	3 cut(s)	369, 547, 885
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4IV	ACGT	4 cut(s)	30, 571, 644, 763
HpyCH4V	TGCA	3 cut(s)	182, 724, 881
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 179, 666, 669, 675, 684
HpyF3I	CTNAG	1 cut(s)	827
HpySE526I	ACGT	4 cut(s)	30, 571, 644, 763
Hsp92II	CATG	6 cut(s)	85, 245, 372, 394, 448, 604
HspAI	GCGC	3 cut(s)	239, 322, 771
Kpn2I	TCCGGA	1 cut(s)	495
Ksp22I	TGATCA	1 cut(s)	433
Kzo9I	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
LmnI	GCTCC	2 cut(s)	311, 609
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	3 cut(s)	151, 160, 169
MabI	ACCWGGT	1 cut(s)	133
MaeI	CTAG	6 cut(s)	236, 567, 591, 618, 792, 813
MaeII	ACGT	4 cut(s)	30, 571, 644, 763
MaeIII	GTNAC	2 cut(s)	284, 343
MalI	GATC	9 cut(s)	13, 111, 273, 378, 435, 778, 790, 835, 847
MboI	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
MboII	GAAGA	3 cut(s)	83, 170, 798
MflI	RGATCY	5 cut(s)	376, 776, 788, 833, 845
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	4 cut(s)	66, 183, 453, 515
MlyI	GAGTC	3 cut(s)	25, 503, 817
MnlI	CCTC	3 cut(s)	245, 366, 703
MroI	TCCGGA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	5 cut(s)	193, 319, 496, 707, 862
MspR9I	CCNGG	6 cut(s)	45, 135, 194, 319, 820, 862
MvaI	CCWGG	3 cut(s)	45, 135, 820
MvnI	CGCG	1 cut(s)	771
MwoI	GCNNNNNNNGC	6 cut(s)	170, 179, 666, 669, 675, 684
NciI	CCSGG	3 cut(s)	194, 319, 862
NdeII	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
NlaIII	CATG	6 cut(s)	85, 245, 372, 394, 448, 604
NlaIV	GGNNCC	1 cut(s)	94
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	165
PagI	TCATGA	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	2 cut(s)	563, 690
PkrI	GCNGC	2 cut(s)	662, 671
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	3 cut(s)	24, 503, 817
PpsI	GAGTC	3 cut(s)	24, 503, 817
Psp6I	CCWGG	3 cut(s)	43, 133, 818
PspGI	CCWGG	3 cut(s)	43, 133, 818
PspN4I	GGNNCC	1 cut(s)	94
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	92, 93
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	5 cut(s)	376, 776, 788, 833, 845
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	89, 203, 339
RsaNI	GTAC	3 cut(s)	88, 202, 338
RseI	CAYNNNNRTG	1 cut(s)	548
SalI	GTCGAC	1 cut(s)	101
SatI	GCNGC	2 cut(s)	661, 670
Sau3AI	GATC	9 cut(s)	11, 109, 271, 376, 433, 776, 788, 833, 845
Sau96I	GGNCC	2 cut(s)	92, 93
SchI	GAGTC	3 cut(s)	25, 503, 817
ScrFI	CCNGG	6 cut(s)	45, 135, 194, 319, 820, 862
SduI	GDGCHC	1 cut(s)	96
SexAI	ACCWGGT	1 cut(s)	133
SfaNI	GCATC	3 cut(s)	151, 160, 169
SfcI	CTRYAG	1 cut(s)	673
Sfr274I	CTCGAG	1 cut(s)	165
SlaI	CTCGAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	4 cut(s)	66, 183, 453, 515
SsiI	CCGC	3 cut(s)	122, 661, 769
SspI	AATATT	1 cut(s)	719
SspMI	CTAG	6 cut(s)	236, 567, 591, 618, 792, 813
StyD4I	CCNGG	6 cut(s)	43, 133, 192, 317, 818, 860
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	1 cut(s)	290
TaiI	ACGT	4 cut(s)	33, 574, 647, 766
TaqI	TCGA	7 cut(s)	14, 102, 166, 220, 274, 397, 647
TasI	AATT	4 cut(s)	66, 183, 453, 515
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	663
TfiI	GAWTC	2 cut(s)	563, 690
TscAI	CASTG	2 cut(s)	352, 731
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	669
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	70, 98, 357
TspGWI	ACGGA	2 cut(s)	419, 622
TspRI	CASTG	2 cut(s)	352, 731
XapI	RAATTY	1 cut(s)	515
XbaI	TCTAGA	2 cut(s)	566, 617
XceI	RCATGY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	165
XmiI	GTMKAC	2 cut(s)	102, 459
XspI	CTAG	6 cut(s)	236, 567, 591, 618, 792, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.