Rw3G006040

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007007
Physical Location & Seq
Forward (+)
5368957 .. 5373403
4447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G006040.1

Sequence Viewer

Length: 849 bp
ATGAGTAGCCGATCGAGTCGTACTATCTACGTGGGGAATCTGCCTGGAGATATTCGTATGAGAGAAATTGAAGATTTATTCATGAAGTATGGACCGATTGTTGACATTGATCTTAAGATCCCTCCCAGACCACCGGGTTATGCTTTTATTGAGTTTGAAGATCCACGTGATGCTGATGATGCAATTTATGGCCGGGATGGTTGCAACTTTGACGGGTATCGCTTACGGGTTGAACTGTCACATGGTAGACGTGGATATTCATCATCAGCAGATCGATTCAGCAGTTACAGTCGTAGTAGCACTAGCCGTGGAGCTTCCCGCCGTTCTGACTATCGTGTGCTGGTCACTGGATTACCTGCTTCTGCTTCATGGCAGGATCTGAAGGATCACATGCGGCAAGCTGGAGATGTTTGTTTTTCGCAAGTGTTCCGTGACCGCCGTGGCATGACGGGAGTTGTAGACTACACAAATTACGATGACATGAAATATGCGATCAGGAAATTGGATGATTCTGAATTTAGAAATGCTTTTTCTCGGTCCTACATACGGGTTGAGGAATATGATTCTAGTCGTGGGTATTCCAGAAGCCCCAGTTATGACTCAAGGCGGAGCCACTCTAGAAGTCCCAGTTGTAGTCCATATCTGTCGAGAAGTCGAAGTCGCAGCCGTAGCTTTGGGGGCCAGAGCAGAAGCATATCACCGGATGCGGACTATTCACGTCGCTCTCCTAGGTCTGCCTCACCTTCCCCTTCAAGATCTCTGTCAAGATCTAGATCTCCAGTTCGTTCTCCTTATTATGGAACTCTTCGCAGGTCGCCATCAAGATCCAGAAGCTTATCCCGTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04657 ko05168 map03040 map04657 map05168
Pfam Domains
Protein Families
RRM_1

Protein Analysis

282

Amino Acids

32.31

Weight (kDa)

10.14

Isoelectric Point (pI)

106.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 76 3.1e-16 RNA recognition motif
RRM_1 PF00076 113 - 175 1.3e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 364, 801
AccI GTMKAC 2 cut(s) 247, 459
AciI CCGC 5 cut(s) 319, 394, 436, 607, 707
AclWI GGATC 5 cut(s) 112, 155, 384, 393, 819
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 401
AcvI CACGTG 1 cut(s) 167
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 546, 797
AflII CTTAAG 1 cut(s) 113
AgsI TTSAA 4 cut(s) 71, 158, 233, 753
AjiI CACGTC 2 cut(s) 251, 719
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 4 cut(s) 314, 401, 672, 834
AluI AGCT 4 cut(s) 314, 401, 672, 834
AlwI GGATC 5 cut(s) 112, 155, 384, 393, 819
AlwNI CAGNNNCTG 1 cut(s) 379
AoxI GGCC 2 cut(s) 190, 679
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 1 cut(s) 515
AspA2I CCTAGG 1 cut(s) 728
AspS9I GGNCC 3 cut(s) 92, 537, 679
AsuC2I CCSGG 2 cut(s) 135, 194
AsuHPI GGTGA 2 cut(s) 690, 732
AvaII GGWCC 2 cut(s) 92, 537
AvrII CCTAGG 1 cut(s) 728
BbrPI CACGTG 1 cut(s) 167
BbvI GCAGC 1 cut(s) 675
BccI CCATC 2 cut(s) 191, 826
BceAI ACGGC 4 cut(s) 291, 306, 423, 651
BciT130I CCWGG 1 cut(s) 45
BcnI CCSGG 2 cut(s) 135, 194
BfaI CTAG 5 cut(s) 303, 567, 618, 729, 771
BfrI CTTAAG 1 cut(s) 113
BfuAI ACCTGC 2 cut(s) 364, 801
BglII AGATCT 3 cut(s) 755, 767, 773
BisI GCNGC 2 cut(s) 395, 664
BlnI CCTAGG 1 cut(s) 728
BlsI GCNGC 2 cut(s) 396, 665
Bme1390I CCNGG 3 cut(s) 45, 135, 194
Bme18I GGWCC 2 cut(s) 92, 537
BmgBI CACGTC 2 cut(s) 251, 719
BmgT120I GGNCC 3 cut(s) 92, 537, 679
BmiI GGNNCC 2 cut(s) 611, 680
BmrFI CCNGG 3 cut(s) 45, 135, 194
BmrI ACTGGG 2 cut(s) 585, 621
BmsI GCATC 3 cut(s) 160, 169, 694
BmuI ACTGGG 2 cut(s) 585, 621
BpmI CTGGAG 3 cut(s) 66, 423, 762
BpuEI CTTGAG 1 cut(s) 586
BpuMI CCSGG 2 cut(s) 135, 194
Bsa29I ATCGAT 1 cut(s) 274
BsaAI YACGTR 2 cut(s) 31, 167
BsaBI GATNNNNATC 2 cut(s) 259, 772
BsaJI CCNNGG 3 cut(s) 307, 439, 728
BsaWI WCCGGW 1 cut(s) 700
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 797
Bse1I ACTGG 4 cut(s) 352, 591, 627, 779
Bse8I GATNNNNATC 2 cut(s) 259, 772
BseBI CCWGG 1 cut(s) 45
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 3 cut(s) 307, 439, 728
BseGI GGATG 3 cut(s) 202, 511, 709
BseJI GATNNNNATC 2 cut(s) 259, 772
BseLI CCNNNNNNNGG 2 cut(s) 546, 797
BseNI ACTGG 4 cut(s) 352, 591, 627, 779
BseXI GCAGC 1 cut(s) 675
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 192, 681
BshVI ATCGAT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 14
BsiSI CCGG 3 cut(s) 134, 193, 701
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 546, 797
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 2 cut(s) 192, 681
BspACI CCGC 5 cut(s) 319, 394, 436, 607, 707
BspANI GGCC 2 cut(s) 192, 681
BspDI ATCGAT 1 cut(s) 274
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 611, 680
BspMI ACCTGC 2 cut(s) 364, 801
BspPI GGATC 5 cut(s) 112, 155, 384, 393, 819
BspTI CTTAAG 1 cut(s) 113
BsrI ACTGG 4 cut(s) 352, 591, 627, 779
BssECI CCNNGG 3 cut(s) 307, 439, 728
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 2 cut(s) 237, 290
Bst6I CTCTTC 1 cut(s) 810
BstAFI CTTAAG 1 cut(s) 113
BstBAI YACGTR 2 cut(s) 31, 167
BstC8I GCNNGC 1 cut(s) 399
BstDSI CCRYGG 2 cut(s) 307, 439
BstF5I GGATG 3 cut(s) 202, 511, 709
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 3 cut(s) 179, 669, 678
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 43, 133, 192
BstV1I GCAGC 1 cut(s) 675
BstX2I RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
BstYI RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
Bsu15I ATCGAT 1 cut(s) 274
BsuRI GGCC 2 cut(s) 192, 681
BsuTUI ATCGAT 1 cut(s) 274
BtgI CCRYGG 2 cut(s) 307, 439
BtrI CACGTC 2 cut(s) 251, 719
BtsCI GGATG 3 cut(s) 202, 511, 709
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 2 cut(s) 364, 801
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 379
CciI TCATGA 1 cut(s) 81
Cfr13I GGNCC 3 cut(s) 92, 537, 679
ClaI ATCGAT 1 cut(s) 274
Csp6I GTAC 1 cut(s) 21
CviAII CATG 6 cut(s) 82, 242, 369, 391, 445, 481
CviQI GTAC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
EciI GGCGGA 1 cut(s) 622
Eco130I CCWWGG 1 cut(s) 728
Eco47I GGWCC 2 cut(s) 92, 537
Eco57I CTGAAG 1 cut(s) 401
Eco72I CACGTG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 728
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 6 cut(s) 85, 245, 372, 394, 448, 484
FaqI GGGAC 1 cut(s) 609
FatI CATG 6 cut(s) 81, 241, 368, 390, 444, 480
FauI CCCGC 1 cut(s) 326
FblI GTMKAC 2 cut(s) 247, 459
Fnu4HI GCNGC 2 cut(s) 395, 664
FokI GGATG 3 cut(s) 209, 518, 716
Fsp4HI GCNGC 2 cut(s) 395, 664
FspBI CTAG 5 cut(s) 303, 567, 618, 729, 771
GluI GCNGC 2 cut(s) 395, 664
GsuI CTGGAG 3 cut(s) 66, 423, 762
HaeIII GGCC 2 cut(s) 192, 681
HapII CCGG 3 cut(s) 134, 193, 701
Hin1II CATG 6 cut(s) 85, 245, 372, 394, 448, 484
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 832
HinfI GANTC 6 cut(s) 16, 37, 276, 509, 563, 599
HpaII CCGG 3 cut(s) 134, 193, 701
HphI GGTGA 2 cut(s) 690, 732
Hpy166II GTNNAC 3 cut(s) 103, 248, 460
Hpy188I TCNGA 3 cut(s) 328, 381, 514
Hpy8I GTNNAC 3 cut(s) 103, 248, 460
Hpy99I CGWCG 1 cut(s) 723
HpyAV CCTTC 3 cut(s) 376, 753, 759
HpyCH4III ACNGT 2 cut(s) 237, 290
HpyCH4IV ACGT 4 cut(s) 30, 166, 250, 718
HpyCH4V TGCA 2 cut(s) 182, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 669, 678
HpySE526I ACGT 4 cut(s) 30, 166, 250, 718
Hsp92II CATG 6 cut(s) 85, 245, 372, 394, 448, 484
LmnI GCTCC 2 cut(s) 311, 609
Lsp1109I GCAGC 1 cut(s) 675
LweI GCATC 3 cut(s) 160, 169, 694
MaeI CTAG 5 cut(s) 303, 567, 618, 729, 771
MaeII ACGT 4 cut(s) 30, 166, 250, 718
MaeIII GTNAC 4 cut(s) 237, 284, 343, 431
MboII GAAGA 3 cut(s) 83, 170, 797
MflI RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
MluCI AATT 5 cut(s) 66, 183, 469, 500, 515
MlyI GAGTC 2 cut(s) 25, 593
MnlI CCTC 3 cut(s) 132, 547, 748
MseI TTAA 2 cut(s) 114, 847
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 3 cut(s) 134, 193, 701
MspR9I CCNGG 3 cut(s) 45, 135, 194
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 179, 669, 678
NciI CCSGG 2 cut(s) 135, 194
NlaIII CATG 6 cut(s) 85, 245, 372, 394, 448, 484
NlaIV GGNNCC 2 cut(s) 611, 680
NmuCI GTSAC 3 cut(s) 237, 343, 431
NspI RCATGY 1 cut(s) 394
PagI TCATGA 1 cut(s) 81
PfeI GAWTC 4 cut(s) 37, 276, 509, 563
PkrI GCNGC 2 cut(s) 396, 665
Ple19I CGATCG 1 cut(s) 14
PleI GAGTC 2 cut(s) 24, 593
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 2 cut(s) 24, 593
Ppu21I YACGTR 2 cut(s) 31, 167
Psp6I CCWGG 1 cut(s) 43
PspCI CACGTG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 611, 680
PspPI GGNCC 3 cut(s) 92, 537, 679
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
PvuI CGATCG 1 cut(s) 14
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 114, 847
SatI GCNGC 2 cut(s) 395, 664
Sau96I GGNCC 3 cut(s) 92, 537, 679
SchI GAGTC 2 cut(s) 25, 593
ScrFI CCNGG 3 cut(s) 45, 135, 194
SfaNI GCATC 3 cut(s) 160, 169, 694
SinI GGWCC 2 cut(s) 92, 537
SmlI CTYRAG 2 cut(s) 113, 601
SmoI CTYRAG 2 cut(s) 113, 601
Sse9I AATT 5 cut(s) 66, 183, 469, 500, 515
SsiI CCGC 5 cut(s) 319, 394, 436, 607, 707
SspMI CTAG 5 cut(s) 303, 567, 618, 729, 771
StyD4I CCNGG 3 cut(s) 43, 133, 192
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 2 cut(s) 237, 290
TaiI ACGT 4 cut(s) 33, 169, 253, 721
TaqI TCGA 4 cut(s) 14, 274, 647, 655
TaqII GACCGA 2 cut(s) 109, 525
TasI AATT 5 cut(s) 66, 183, 469, 500, 515
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 4 cut(s) 37, 276, 509, 563
Tru1I TTAA 2 cut(s) 114, 847
Tru9I TTAA 2 cut(s) 114, 847
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 3 cut(s) 237, 343, 431
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 3 cut(s) 237, 343, 431
TspDTI ATGAA 5 cut(s) 70, 98, 249, 357, 497
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 352
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 92, 537
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 2 cut(s) 617, 770
XceI RCATGY 1 cut(s) 394
XmaJI CCTAGG 1 cut(s) 728
XmiI GTMKAC 2 cut(s) 247, 459
XspI CTAG 5 cut(s) 303, 567, 618, 729, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.