Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Reverse (-)

20336725 .. 20344216

Gene Structure 7492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGACCCAAAATGGTTCAATTATAAATTCTAGGAGCCAGGAAAGATTTGAAGATCCACGTGATGCCGATGATGCGAATTATGGCCGGGTTGGTTGCCACTTTGTTGGGTATCGCTTACGGGTTGAACTAGCATATGGTAGACGTGGATATTCATCATCGACAGATCGATTCGGTAGTTACGGTCATAGTAGCGGTAGACGTGGAGCTTTCGCCGTTCGGCTATCATGTGCGGTCACCGGATTACCCGCTTTCGCTTCGTGGCGGGGACCGAAGGATCACACGCGTCAAGCCGGAGATGTTGTTTTCGCAAGTGTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

9.77

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AccI	GTMKAC	2 cut(s)	139, 196
AccII	CGCG	1 cut(s)	283
AciI	CCGC	4 cut(s)	192, 230, 246, 262
AclWI	GGATC	2 cut(s)	47, 282
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	25
AcvI	CACGTG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	18, 50, 125
AjiI	CACGTC	2 cut(s)	143, 200
AjnI	CCWGG	1 cut(s)	36
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
AlwI	GGATC	2 cut(s)	47, 282
AoxI	GGCC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	266
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	266
BbrPI	CACGTG	1 cut(s)	59
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	1 cut(s)	38
BcnI	CCSGG	1 cut(s)	86
BfaI	CTAG	2 cut(s)	30, 128
Bme1390I	CCNGG	2 cut(s)	38, 86
Bme18I	GGWCC	1 cut(s)	266
BmgBI	CACGTC	2 cut(s)	143, 200
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	2 cut(s)	35, 267
BmrFI	CCNGG	2 cut(s)	38, 86
BmsI	GCATC	2 cut(s)	52, 61
BpuMI	CCSGG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	236
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bse8I	GATNNNNATC	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	283
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	85, 237, 291
BslFI	GGGAC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	52, 163, 274
BspACI	CCGC	4 cut(s)	192, 230, 246, 262
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	35, 267
BspPI	GGATC	2 cut(s)	47, 282
BssMI	GATC	3 cut(s)	52, 163, 274
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	59
BstEII	GGTNACC	1 cut(s)	232
BstFNI	CGCG	1 cut(s)	283
BstKTI	GATC	3 cut(s)	55, 166, 277
BstMBI	GATC	3 cut(s)	52, 163, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	38
BstPI	GGTNACC	1 cut(s)	232
BstSCI	CCNGG	2 cut(s)	36, 84
BstUI	CGCG	1 cut(s)	283
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	166
BtrI	CACGTC	2 cut(s)	143, 200
Cfr13I	GGNCC	1 cut(s)	266
ClaI	ATCGAT	1 cut(s)	166
CseI	GACGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	225, 318
CviJI	RGCY	5 cut(s)	36, 84, 206, 220, 290
CviKI_1	RGCY	5 cut(s)	36, 84, 206, 220, 290
DpnI	GATC	3 cut(s)	54, 165, 276
DpnII	GATC	3 cut(s)	52, 163, 274
EaeI	YGGCCR	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	266
Eco72I	CACGTG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	228, 321
FaiI	YATR	7 cut(s)	23, 81, 133, 135, 186, 226, 319
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	224, 317
FauI	CCCGC	2 cut(s)	253, 255
FauNDI	CATATG	1 cut(s)	133
FblI	GTMKAC	2 cut(s)	139, 196
FspBI	CTAG	2 cut(s)	30, 128
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	3 cut(s)	85, 237, 291
HgaI	GACGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	228, 321
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	3 cut(s)	85, 237, 291
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	140, 197
Hpy8I	GTNNAC	2 cut(s)	140, 197
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	3 cut(s)	58, 142, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpySE526I	ACGT	3 cut(s)	58, 142, 199
Hsp92II	CATG	2 cut(s)	228, 321
Kzo9I	GATC	3 cut(s)	52, 163, 274
LmnI	GCTCC	2 cut(s)	33, 203
LpnPI	CCDG	5 cut(s)	23, 50, 98, 250, 304
LweI	GCATC	2 cut(s)	52, 61
MaeI	CTAG	2 cut(s)	30, 128
MaeII	ACGT	3 cut(s)	58, 142, 199
MaeIII	GTNAC	2 cut(s)	176, 232
MalI	GATC	3 cut(s)	54, 165, 276
MboI	GATC	3 cut(s)	52, 163, 274
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	3 cut(s)	18, 25, 76
MluI	ACGCGT	1 cut(s)	281
MspI	CCGG	3 cut(s)	85, 237, 291
MspR9I	CCNGG	2 cut(s)	38, 86
MvaI	CCWGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	86
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	3 cut(s)	52, 163, 274
NlaIII	CATG	2 cut(s)	228, 321
NlaIV	GGNNCC	2 cut(s)	35, 267
NmuCI	GTSAC	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	168
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	59
PsiI	TTATAA	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	36
PspCI	CACGTG	1 cut(s)	59
PspEI	GGTNACC	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	35, 267
PspPI	GGNCC	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	52
Sau3AI	GATC	3 cut(s)	52, 163, 274
Sau96I	GGNCC	1 cut(s)	266
ScrFI	CCNGG	2 cut(s)	38, 86
SetI	ASST	4 cut(s)	61, 145, 202, 208
SfaNI	GCATC	2 cut(s)	52, 61
SinI	GGWCC	1 cut(s)	266
Sse9I	AATT	3 cut(s)	18, 25, 76
SsiI	CCGC	4 cut(s)	192, 230, 246, 262
SspMI	CTAG	2 cut(s)	30, 128
StyD4I	CCNGG	2 cut(s)	36, 84
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	3 cut(s)	61, 145, 202
TaqI	TCGA	2 cut(s)	158, 166
TaqII	GACCGA	1 cut(s)	283
TasI	AATT	3 cut(s)	18, 25, 76
TfiI	GAWTC	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	25
XmiI	GTMKAC	2 cut(s)	139, 196
XspI	CTAG	2 cut(s)	30, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.