Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Forward (+)

29113669 .. 29118101

Gene Structure 4433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1212300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGAGAAGTTGAAGATTTGTTCCTGAAGTATGGGCCTATTGTTGACATTGATCTCAAAATCCCTCCAAGACCGCCAGGTTATGCTTTTGTTGAGTATGAAGATCCTCGTGATGCTGATGATGCAATTTATGGCCGGGATGGGTACGACTTTGATGGGTTTCGTTTACGGGTTGAACTAGCACATGGTGGACGGCACTCCTCATCACATCGTTCCAGCAGTTACAGTCGTAGTAGCAGCAGCCGTGGTGCTTCTCGGCGCTCTGACTATCGTGTGCTGGTCACTGGATTGCCTCCTGCTGCTTCGTGGCAGGATCTGAAAGATCACATGCGCCGAGCTGGAGATGTCTGCTTTTCTCAAGTGTTCCGTGATCGTGGTGGCATGACGGGAATTGTGGATTACACAAACTACGAGGATATGAAATATGCTATCAGAAAACTCGATGACTCTGAATTCAGAAATGCCTTTGCTCGCTCTTACATACGGGTGAGGGAGTATGATTCTAGGCATAGCTATTCCAGAAGCCCTGGTTATGACTATAGACGGAGCTACTCTAGAAGCCCTAGTCGTTCTCCATATATGTCAAGAAGTCCAAGTGTCAGCCGCAGCTATAGCTATGGGGGCCAGAGCAGAAGCATATCACCGGAGTCAACATATTCACGCCGCTCTCCATCAGTATCTCACCGAAGGTCTGTCTCACGTTCCCGCTCAAGATCTGGCATTTGTGGAGATCTGGGGACTGGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

250

Amino Acids

28.44

Weight (kDa)

9.76

Isoelectric Point (pI)

90.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	3 - 57	2.1e-11	RNA recognition motif
RRM_1	PF00076	92 - 154	8.1e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	666, 708
AciI	CCGC	4 cut(s)	74, 604, 664, 706
AclWI	GGATC	2 cut(s)	98, 321
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	14, 176
AjnI	CCWGG	2 cut(s)	76, 526
AluBI	AGCT	5 cut(s)	338, 513, 549, 609, 615
AluI	AGCT	5 cut(s)	338, 513, 549, 609, 615
Alw26I	GTCTC	1 cut(s)	700
AlwI	GGATC	2 cut(s)	98, 321
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	3 cut(s)	35, 133, 622
ApeKI	GCWGC	4 cut(s)	237, 240, 299, 606
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	2 cut(s)	261, 333
AspS9I	GGNCC	2 cut(s)	35, 622
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	499, 633, 674
BauI	CACGAG	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	249, 252, 286, 618
BccI	CCATC	3 cut(s)	134, 149, 679
BceAI	ACGGC	2 cut(s)	209, 228
BciT130I	CCWGG	2 cut(s)	78, 528
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	4 cut(s)	179, 504, 555, 564
BfmI	CTRYAG	2 cut(s)	538, 610
BfoI	RGCGCY	1 cut(s)	262
BglII	AGATCT	2 cut(s)	713, 730
BisI	GCNGC	6 cut(s)	238, 241, 300, 604, 607, 664
BlsI	GCNGC	6 cut(s)	239, 242, 301, 605, 608, 665
Bme1390I	CCNGG	3 cut(s)	78, 137, 528
BmgT120I	GGNCC	2 cut(s)	35, 622
BmiI	GGNNCC	1 cut(s)	623
BmrFI	CCNGG	3 cut(s)	78, 137, 528
BmsI	GCATC	2 cut(s)	103, 112
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	342, 694
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	244, 526
BsaWI	WCCGGW	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	289, 745
BseBI	CCWGG	2 cut(s)	78, 528
BseDI	CCNNGG	2 cut(s)	244, 526
BseGI	GGATG	1 cut(s)	145
BseNI	ACTGG	2 cut(s)	289, 745
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	4 cut(s)	249, 252, 286, 618
BshFI	GGCC	3 cut(s)	37, 135, 624
BsiSI	CCGG	2 cut(s)	136, 644
BsmAI	GTCTC	1 cut(s)	700
BsnI	GGCC	3 cut(s)	37, 135, 624
Bsp143I	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
BspACI	CCGC	4 cut(s)	74, 604, 664, 706
BspANI	GGCC	3 cut(s)	37, 135, 624
BspLI	GGNNCC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	98, 321
BsrBI	CCGCTC	2 cut(s)	666, 708
BsrI	ACTGG	2 cut(s)	289, 745
BssECI	CCNNGG	2 cut(s)	244, 526
BssMI	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	78, 528
Bst4CI	ACNGT	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	472
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	2 cut(s)	261, 333
BstKTI	GATC	8 cut(s)	55, 106, 316, 325, 373, 716, 733, 746
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 612, 621
BstNI	CCWGG	2 cut(s)	78, 528
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	3 cut(s)	76, 135, 526
BstSFI	CTRYAG	2 cut(s)	538, 610
BstV1I	GCAGC	4 cut(s)	249, 252, 286, 618
BstX2I	RGATCY	5 cut(s)	103, 313, 713, 730, 743
BstYI	RGATCY	5 cut(s)	103, 313, 713, 730, 743
BsuRI	GGCC	3 cut(s)	37, 135, 624
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	472
CaiI	CAGNNNCTG	1 cut(s)	316
CfoI	GCGC	2 cut(s)	261, 333
Cfr13I	GGNCC	2 cut(s)	35, 622
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	185, 328, 382
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	8 cut(s)	54, 105, 315, 324, 372, 715, 732, 745
DpnII	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
DraIII	CACNNNGTG	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	76, 526
FaeI	CATG	3 cut(s)	188, 331, 385
FatI	CATG	3 cut(s)	184, 327, 381
FauI	CCCGC	1 cut(s)	713
Fnu4HI	GCNGC	6 cut(s)	238, 241, 300, 604, 607, 664
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	6 cut(s)	238, 241, 300, 604, 607, 664
FspBI	CTAG	4 cut(s)	179, 504, 555, 564
GlaI	GCGC	2 cut(s)	260, 332
GluI	GCNGC	6 cut(s)	238, 241, 300, 604, 607, 664
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	3 cut(s)	37, 135, 624
HapII	CCGG	2 cut(s)	136, 644
HhaI	GCGC	2 cut(s)	261, 333
Hin1II	CATG	3 cut(s)	188, 331, 385
Hin6I	GCGC	2 cut(s)	259, 331
HinP1I	GCGC	2 cut(s)	259, 331
HincII	GTYRAC	2 cut(s)	46, 651
HindII	GTYRAC	2 cut(s)	46, 651
HinfI	GANTC	3 cut(s)	446, 500, 647
HpaII	CCGG	2 cut(s)	136, 644
HphI	GGTGA	3 cut(s)	499, 633, 674
Hpy166II	GTNNAC	4 cut(s)	46, 167, 191, 651
Hpy188I	TCNGA	5 cut(s)	265, 318, 434, 451, 458
Hpy188III	TCNNGA	6 cut(s)	25, 110, 519, 555, 585, 711
Hpy8I	GTNNAC	4 cut(s)	46, 167, 191, 651
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 612, 621
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	3 cut(s)	188, 331, 385
HspAI	GCGC	2 cut(s)	259, 331
Kzo9I	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	4 cut(s)	249, 252, 286, 618
LweI	GCATC	2 cut(s)	103, 112
MaeI	CTAG	4 cut(s)	179, 504, 555, 564
MaeII	ACGT	1 cut(s)	700
MaeIII	GTNAC	2 cut(s)	221, 280
MalI	GATC	8 cut(s)	54, 105, 315, 324, 372, 715, 732, 745
MbiI	CCGCTC	2 cut(s)	666, 708
MboI	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
MboII	GAAGA	2 cut(s)	26, 113
MflI	RGATCY	5 cut(s)	103, 313, 713, 730, 743
MluCI	AATT	3 cut(s)	126, 390, 452
MlyI	GAGTC	2 cut(s)	440, 656
MnlI	CCTC	6 cut(s)	75, 117, 211, 303, 406, 483
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	2 cut(s)	136, 644
MspR9I	CCNGG	3 cut(s)	78, 137, 528
MvaI	CCWGG	2 cut(s)	78, 528
MwoI	GCNNNNNNNGC	3 cut(s)	122, 612, 621
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
NlaIII	CATG	3 cut(s)	188, 331, 385
NlaIV	GGNNCC	1 cut(s)	623
NmeAIII	GCCGAG	2 cut(s)	235, 359
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	500
PkrI	GCNGC	6 cut(s)	239, 242, 301, 605, 608, 665
PleI	GAGTC	2 cut(s)	440, 655
PpsI	GAGTC	2 cut(s)	440, 655
Psp6I	CCWGG	2 cut(s)	76, 526
PspGI	CCWGG	2 cut(s)	76, 526
PspN4I	GGNNCC	1 cut(s)	623
PspPI	GGNCC	2 cut(s)	35, 622
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	5 cut(s)	103, 313, 713, 730, 743
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	485
SatI	GCNGC	6 cut(s)	238, 241, 300, 604, 607, 664
Sau3AI	GATC	8 cut(s)	52, 103, 313, 322, 370, 713, 730, 743
Sau96I	GGNCC	2 cut(s)	35, 622
SchI	GAGTC	2 cut(s)	440, 656
ScrFI	CCNGG	3 cut(s)	78, 137, 528
SetI	ASST	8 cut(s)	82, 340, 515, 551, 611, 617, 692, 703
SfaNI	GCATC	2 cut(s)	103, 112
SfcI	CTRYAG	2 cut(s)	538, 610
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	357, 709
SmoI	CTYRAG	2 cut(s)	357, 709
Sse9I	AATT	3 cut(s)	126, 390, 452
SsiI	CCGC	4 cut(s)	74, 604, 664, 706
SspMI	CTAG	4 cut(s)	179, 504, 555, 564
StyD4I	CCNGG	3 cut(s)	76, 135, 526
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	1 cut(s)	441
TasI	AATT	3 cut(s)	126, 390, 452
TauI	GCSGC	2 cut(s)	606, 666
TfiI	GAWTC	1 cut(s)	500
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	4 cut(s)	237, 240, 299, 606
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	2 cut(s)	114, 434
TspGWI	ACGGA	2 cut(s)	356, 559
TspRI	CASTG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	554
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	4 cut(s)	179, 504, 555, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.