Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006888.1

Orthogroup ID

OG0007007

Physical Location & Seq

Genomic Coordinates Forward (+)

10476 .. 14818

Gene Structure 4343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006888.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgagtagccgatcgagtcgtactatctacgtggggaatctgcctggagatattcgtatgagagaaattgaagatttattcatgaagtatggaccgattgttgacattgatcttaagatccctcccagaccaccgggttatgcttttattgagtttgaagatccacgtgatgctgatgatgcgatttatggccgggatggttgcaactttgacgggtatcgtttacgggttgaactagcacatggtagacgtggatattcatcatcagcagatcgattcagcagttacagtcgtagtagcagtagccgtggagcttcccgccgttctgactatcgtgtgctggtcactggattacctgcttctgcttcatggcaagatctgaaggatcacatgcgtcaagctggagatgtttgtttttcgcaagtgttccgtgaccgccgtggcatgacgggagttgtagactacacaaattacgatgacatgaaatatgcgatcaggaaattggatgattctgaatttagaaatgctttttctcggtcctacatacgggtcgaggaatatgattctagtcgtgggtattccagaagccccagttatgactcgaggcagagctactctagaagtcccagttgtagtccatatgtgtcgagaagtcgcagtcgcagccgtagctttggaggccagagcagcatatcaccggatgtggaatattcgcgccgctctcctaggtctgcctcaccttccccttcaaggaacttgacgggaagtggtgttgatgcctgcaactctttaggttcaggaccttgggtcagaggttatactgttattgagattgatttgaattttcacattattgcagatctctgtcaagatctagatctccagttcgttctccttattatggaactcttcgcaggtcgccatcaagatccagaagcttatcccgttagcttggtgacatgcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

322

Amino Acids

36.41

Weight (kDa)

8.15

Isoelectric Point (pI)

79.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09140 AT1G09140 AT1G09140
fragaria_vesca	FvH4_6g06650 FvH4_6g06650 FvH4_6g06650
malus_domestica	MD12G1212300.v1.1
prunus_persica	Prupe.6G320000_v2.0.a1 Prupe.6G320000_v2.0.a1
pyrus_communis	pycom04g17620
rosa_chinensis	RchiOBHm_Chr3g0455851
rosa_laevigata	RLG00000025327
rosa_multiflora	Rmu_sc0006888.1_g000001 Rmu_ssc0000046.1_g000012
rosa_roxburghii	Rroxscaffold_4G00300180 Rroxscaffold_6G00423400 Rroxscaffold_6G00423890
rosa_rugosa	Rorug03G0010600 Rorug03G0010700
rosa_samantha	Rh3AG070100 Rh3BG072700 Rh3CG070900 Rh3DG074100
rosa_wichuraiana	Rw3G005690 Rw3G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	364, 905
AccBSI	CCGCTC	1 cut(s)	720
AccI	GTMKAC	2 cut(s)	247, 459
AccII	CGCG	1 cut(s)	715
AciI	CCGC	3 cut(s)	319, 436, 718
AclWI	GGATC	4 cut(s)	112, 155, 393, 923
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	515, 841
AcuI	CTGAAG	1 cut(s)	401
AcvI	CACGTG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	3 cut(s)	546, 750, 901
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	5 cut(s)	71, 158, 233, 750, 841
AhdI	GACNNNNNGTC	1 cut(s)	806
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	6 cut(s)	314, 401, 612, 672, 938, 951
AluI	AGCT	6 cut(s)	314, 401, 612, 672, 938, 951
AlwI	GGATC	4 cut(s)	112, 155, 393, 923
Ama87I	CYCGRG	1 cut(s)	601
AoxI	GGCC	2 cut(s)	190, 679
ApeKI	GCWGC	2 cut(s)	663, 687
ApoI	RAATTY	2 cut(s)	515, 841
AspA2I	CCTAGG	1 cut(s)	725
AspLEI	GCGC	1 cut(s)	717
AspS9I	GGNCC	3 cut(s)	92, 537, 800
AsuC2I	CCSGG	2 cut(s)	135, 194
AsuHPI	GGTGA	3 cut(s)	687, 729, 967
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	3 cut(s)	92, 537, 800
AvrII	CCTAGG	1 cut(s)	725
BbrPI	CACGTG	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	675, 699
BccI	CCATC	2 cut(s)	191, 930
BceAI	ACGGC	4 cut(s)	291, 306, 423, 651
BciT130I	CCWGG	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	135, 194
BfaI	CTAG	5 cut(s)	236, 567, 618, 726, 875
BfrI	CTTAAG	1 cut(s)	113
BfuAI	ACCTGC	2 cut(s)	364, 905
BglII	AGATCT	4 cut(s)	376, 859, 871, 877
BisI	GCNGC	3 cut(s)	664, 688, 718
BlnI	CCTAGG	1 cut(s)	725
BlsI	GCNGC	3 cut(s)	665, 689, 719
Bme1390I	CCNGG	3 cut(s)	45, 135, 194
Bme18I	GGWCC	3 cut(s)	92, 537, 800
BmeRI	GACNNNNNGTC	1 cut(s)	806
BmeT110I	CYCGRG	1 cut(s)	601
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	3 cut(s)	92, 537, 800
BmrFI	CCNGG	3 cut(s)	45, 135, 194
BmrI	ACTGGG	2 cut(s)	585, 621
BmsI	GCATC	3 cut(s)	160, 169, 766
BmuI	ACTGGG	2 cut(s)	585, 621
BpmI	CTGGAG	3 cut(s)	66, 423, 866
BpuMI	CCSGG	2 cut(s)	135, 194
Bsa29I	ATCGAT	1 cut(s)	274
BsaAI	YACGTR	2 cut(s)	31, 167
BsaBI	GATNNNNATC	2 cut(s)	259, 876
BsaJI	CCNNGG	4 cut(s)	307, 439, 725, 803
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	3 cut(s)	546, 750, 901
Bse1I	ACTGG	4 cut(s)	352, 591, 627, 883
Bse8I	GATNNNNATC	2 cut(s)	259, 876
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	4 cut(s)	307, 439, 725, 803
BseGI	GGATG	3 cut(s)	202, 511, 706
BseJI	GATNNNNATC	2 cut(s)	259, 876
BseLI	CCNNNNNNNGG	3 cut(s)	546, 750, 901
BseNI	ACTGG	4 cut(s)	352, 591, 627, 883
BseXI	GCAGC	2 cut(s)	675, 699
Bsh1236I	CGCG	1 cut(s)	715
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	192, 681
BshVI	ATCGAT	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	3 cut(s)	134, 193, 698
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	3 cut(s)	546, 750, 901
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	192, 681
BsoBI	CYCGRG	1 cut(s)	601
BspACI	CCGC	3 cut(s)	319, 436, 718
BspANI	GGCC	2 cut(s)	192, 681
BspDI	ATCGAT	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	715
BspHI	TCATGA	1 cut(s)	81
BspMI	ACCTGC	2 cut(s)	364, 905
BspPI	GGATC	4 cut(s)	112, 155, 393, 923
BspTI	CTTAAG	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	720
BsrI	ACTGG	4 cut(s)	352, 591, 627, 883
BssECI	CCNNGG	4 cut(s)	307, 439, 725, 803
BssT1I	CCWWGG	2 cut(s)	725, 803
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	290, 823
Bst6I	CTCTTC	1 cut(s)	914
BstAFI	CTTAAG	1 cut(s)	113
BstBAI	YACGTR	2 cut(s)	31, 167
BstC8I	GCNNGC	1 cut(s)	781
BstDSI	CCRYGG	2 cut(s)	307, 439
BstF5I	GGATG	3 cut(s)	202, 511, 706
BstFNI	CGCG	1 cut(s)	715
BstHHI	GCGC	1 cut(s)	717
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 663, 669, 678, 687
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	2 cut(s)	394, 963
BstSCI	CCNGG	3 cut(s)	43, 133, 192
BstUI	CGCG	1 cut(s)	715
BstV1I	GCAGC	2 cut(s)	675, 699
BstX2I	RGATCY	7 cut(s)	117, 160, 376, 859, 871, 877, 928
BstYI	RGATCY	7 cut(s)	117, 160, 376, 859, 871, 877, 928
Bsu15I	ATCGAT	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	192, 681
BsuTUI	ATCGAT	1 cut(s)	274
BtgI	CCRYGG	2 cut(s)	307, 439
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	202, 511, 706
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	2 cut(s)	364, 905
Cac8I	GCNNGC	1 cut(s)	781
CciI	TCATGA	1 cut(s)	81
CfoI	GCGC	1 cut(s)	717
Cfr13I	GGNCC	3 cut(s)	92, 537, 800
ClaI	ATCGAT	1 cut(s)	274
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	7 cut(s)	82, 242, 369, 391, 445, 481, 960
CviQI	GTAC	1 cut(s)	21
DriI	GACNNNNNGTC	1 cut(s)	806
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	914
Eam1105I	GACNNNNNGTC	1 cut(s)	806
EarI	CTCTTC	1 cut(s)	914
Eco130I	CCWWGG	2 cut(s)	725, 803
Eco47I	GGWCC	3 cut(s)	92, 537, 800
Eco57I	CTGAAG	1 cut(s)	401
Eco72I	CACGTG	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	725, 803
EcoT22I	ATGCAT	1 cut(s)	965
ErhI	CCWWGG	2 cut(s)	725, 803
FaeI	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 963
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	7 cut(s)	81, 241, 368, 390, 444, 480, 959
FauI	CCCGC	1 cut(s)	326
FauNDI	CATATG	2 cut(s)	640, 965
FblI	GTMKAC	2 cut(s)	247, 459
Fnu4HI	GCNGC	3 cut(s)	664, 688, 718
FokI	GGATG	3 cut(s)	209, 518, 713
Fsp4HI	GCNGC	3 cut(s)	664, 688, 718
FspBI	CTAG	5 cut(s)	236, 567, 618, 726, 875
GlaI	GCGC	1 cut(s)	716
GluI	GCNGC	3 cut(s)	664, 688, 718
GsuI	CTGGAG	3 cut(s)	66, 423, 866
HaeIII	GGCC	2 cut(s)	192, 681
HapII	CCGG	3 cut(s)	134, 193, 698
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	717
Hin1II	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 963
Hin6I	GCGC	1 cut(s)	715
HinP1I	GCGC	1 cut(s)	715
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	936
HinfI	GANTC	6 cut(s)	16, 37, 276, 509, 563, 599
HpaII	CCGG	3 cut(s)	134, 193, 698
HphI	GGTGA	3 cut(s)	687, 729, 967
Hpy166II	GTNNAC	4 cut(s)	103, 224, 248, 460
Hpy188I	TCNGA	4 cut(s)	328, 381, 514, 812
Hpy8I	GTNNAC	4 cut(s)	103, 224, 248, 460
HpyAV	CCTTC	3 cut(s)	376, 750, 756
HpyCH4III	ACNGT	2 cut(s)	290, 823
HpyCH4IV	ACGT	3 cut(s)	30, 166, 250
HpyCH4V	TGCA	4 cut(s)	204, 783, 857, 963
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 663, 669, 678, 687
HpySE526I	ACGT	3 cut(s)	30, 166, 250
Hsp92II	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 963
HspAI	GCGC	1 cut(s)	715
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	2 cut(s)	675, 699
LweI	GCATC	3 cut(s)	160, 169, 766
MaeI	CTAG	5 cut(s)	236, 567, 618, 726, 875
MaeII	ACGT	3 cut(s)	30, 166, 250
MaeIII	GTNAC	4 cut(s)	284, 343, 431, 955
MbiI	CCGCTC	1 cut(s)	720
MboII	GAAGA	3 cut(s)	83, 170, 901
MflI	RGATCY	7 cut(s)	117, 160, 376, 859, 871, 877, 928
MluCI	AATT	5 cut(s)	66, 469, 500, 515, 841
MlyI	GAGTC	2 cut(s)	25, 593
MnlI	CCTC	6 cut(s)	132, 547, 597, 671, 745, 806
Mph1103I	ATGCAT	1 cut(s)	965
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	964
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	3 cut(s)	134, 193, 698
MspR9I	CCNGG	3 cut(s)	45, 135, 194
MvaI	CCWGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	715
MwoI	GCNNNNNNNGC	5 cut(s)	179, 663, 669, 678, 687
NciI	CCSGG	2 cut(s)	135, 194
NdeI	CATATG	2 cut(s)	640, 965
NlaIII	CATG	7 cut(s)	85, 245, 372, 394, 448, 484, 963
NmuCI	GTSAC	3 cut(s)	343, 431, 955
NsiI	ATGCAT	1 cut(s)	965
NspI	RCATGY	2 cut(s)	394, 963
PaeR7I	CTCGAG	1 cut(s)	601
PagI	TCATGA	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	37, 276, 509, 563
PkrI	GCNGC	3 cut(s)	665, 689, 719
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	2 cut(s)	24, 593
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	2 cut(s)	24, 593
Ppu21I	YACGTR	2 cut(s)	31, 167
PpuMI	RGGWCCY	1 cut(s)	800
Psp5II	RGGWCCY	1 cut(s)	800
Psp6I	CCWGG	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	92, 537, 800
PspPPI	RGGWCCY	1 cut(s)	800
PspXI	VCTCGAGB	1 cut(s)	601
PsuI	RGATCY	7 cut(s)	117, 160, 376, 859, 871, 877, 928
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	964
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	3 cut(s)	664, 688, 718
Sau96I	GGNCC	3 cut(s)	92, 537, 800
SchI	GAGTC	2 cut(s)	25, 593
ScrFI	CCNGG	3 cut(s)	45, 135, 194
SfaNI	GCATC	3 cut(s)	160, 169, 766
Sfr274I	CTCGAG	1 cut(s)	601
SinI	GGWCC	3 cut(s)	92, 537, 800
SlaI	CTCGAG	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	964
SmlI	CTYRAG	2 cut(s)	113, 601
SmoI	CTYRAG	2 cut(s)	113, 601
Sse9I	AATT	5 cut(s)	66, 469, 500, 515, 841
SsiI	CCGC	3 cut(s)	319, 436, 718
SspI	AATATT	1 cut(s)	710
SspMI	CTAG	5 cut(s)	236, 567, 618, 726, 875
StyD4I	CCNGG	3 cut(s)	43, 133, 192
StyI	CCWWGG	2 cut(s)	725, 803
TaaI	ACNGT	2 cut(s)	290, 823
TaiI	ACGT	3 cut(s)	33, 169, 253
TaqI	TCGA	5 cut(s)	14, 274, 552, 602, 647
TaqII	GACCGA	2 cut(s)	109, 525
TasI	AATT	5 cut(s)	66, 469, 500, 515, 841
TauI	GCSGC	1 cut(s)	720
TfiI	GAWTC	4 cut(s)	37, 276, 509, 563
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	3 cut(s)	343, 431, 955
TseI	GCWGC	2 cut(s)	663, 687
Tsp45I	GTSAC	3 cut(s)	343, 431, 955
TspDTI	ATGAA	5 cut(s)	70, 98, 249, 357, 497
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	352
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	92, 537, 800
XapI	RAATTY	2 cut(s)	515, 841
XbaI	TCTAGA	2 cut(s)	617, 874
XceI	RCATGY	2 cut(s)	394, 963
XhoI	CTCGAG	1 cut(s)	601
XmaJI	CCTAGG	1 cut(s)	725
XmiI	GTMKAC	2 cut(s)	247, 459
XspI	CTAG	5 cut(s)	236, 567, 618, 726, 875
Zsp2I	ATGCAT	1 cut(s)	965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.