FvH4_6g10271

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014523
Physical Location & Seq
Reverse (-)
6109566 .. 6111632
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10271.t1

Sequence Viewer

Length: 2067 bp
ATGACTGCCTTGGGCAGCAGAGCCTGCCTTGCAATCTCCAAGGCTTTGGAGACCAAGCACCGCCTTATTGAAGGCTTCACCTCCTTCAAGCAGCTCAAGCATGCCCACGCTCGTCTCCTCCGCCTCGGCCTCGACCAAGACAACCACCTCCTCACCTTGCTCCTGCGCTCCGCCTTCGATTTCCGGCAGACCAACTACGCCCTTCTTGTCTTTCACCGCACCGCAGAGCCCAACGTTTATCTATTCAACACCATTATCCGCGGATTGGTTTCGCACGAATGTTGGGAAGATGCAATCAGATTATACGGTTCAATGCGGACCGAGGGGCTGTTCCCGGACAGCTATACATTCCCTTTTGTTTTGAAGGCGTGCGCGAGGCGTTTGGACTTGCAAATAGGGTTGAGTGTTCATACGCTTGTTGTGAAGACGGGTTTTGACTTTGATGTGTATGTGAAAACTAGTTTGCTCTGCTTGTATGCGAAATGTGGGTATATGGAGCATGCGCATAAGGTGTTTGATGATTTGCCTGAGAAGAGTGTGGTGTCTTGGACTGCTATTGTTTCTGGATACATTGGAGCTGGGAAGTTTAGGGAAGCTATTGATGCGTTTTTGAGGTTGTTGGAGATGGGTTTGAGGCCTGATAGTCTTAGCCTTGTACGGGCTATATCCGCGTGTAGTCAGTTGGGGGATTTACGGAGTGGGGAGTGGATAGATGATTACATTACGGAGATTGGGATGGCGAGGAATGTGTTTGTGGCTACTTCTTTGGTTGATTTGTATGCCAAGTGTGGTAACATGGAGAAAGCGCGTTTTGTATTTGATGGAATAGCTGAGAAGGATGTAGTTGTTTGGAGTAGTATGATTCAGGGGTATGCATTGAATGGGCTTCCTAAAGAAGCGGTAGATCTCTTCTTTCAAATGCAGAAGGAGAATTTGAAACCGGATTGTTATGCTATGGTTGGGGTGCTTTCTGCTTGTGCTAGATTAGGAGCTCTAGGGCTAGGGGAGTGGGCTAGCAATTTGGTGGACAGGAATGAGATTTTTAATAACCCTGTTCTTGGTACAGCTTTGATCGACATGTATGCGAAATGTGGGAGCATCGTCCAAGCTTGGGAAGTCTTTAAAGGGATGAAGAAGAAAGATCATGTGGTTTGGAATGCAGCTATGTCGGGATTAGCTATGAACGGACATGTCAAAGCTGTGTTCGGGCTATTTGGACAAGTTGAGAAATATGGAGTTAGAGCTACTGGGAACACTTTCATGGGATTGCTTTGTGGATGTTGTCATGCTGGTCTGGTTGATGAAGGTCGTAGCTATTTCAATAGCATGACTAGAGTCTATTCCTTGACTCCTACGATTGAGCATTATGGATGTATGGTGGATCTTCTTGGCCGTGCAGGTTTGTTGGATGAAGCTTACGATTTGATTAATAGTATGTCGATGAAAGCGAACTCTGTTGTTTGGGGAGCATTGTTAGGTGGATGCAGGCTGCATCGGGATACTCAATTGGCTGAACTTGCACTAAAACAACTCATTGAGCTGGAACCATGGAACTCAGCACATTATGTTCTCCTCTCAAATGTTTACTCTGCAAGTCAGAAATGGGACGAGGCAGCCAACATTAGATCAAGAATGAATGAGCAAGGACTCCAGAAAATCCCCGGCTGCAGCTGGATCGAAGTAAACGGGGTTGTCCATGAATTCCTCGTGGGAGACAAGTCCCACGAGCTCTCCGACAAGATATACGCGAAACTCAACGAGCTGGCCAAGGACCTCAAAGCAGCTGGTTACATTCCAACCACAGATTTCGTGTTATTCGACATAGAAGAGGAGGAGAAGGAGCATTTCCTCGGCTGCCACAGTGAGAAGCTAGCCATTGCATTTGCTCTAATCGCCACCGCCCCTCAAGACACCATCCGAGTCTCAAAGAACCTCCGCGTATGCGGCGACTGCCACCAGGCCATAAAGCTCATCTCCAAGATCACAAGCAGAGAGATCATTGTTCGAGACAATAACAGATTCCATCGCTTCATTGATGGTACATGTTCATGTAGAGATTACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

689

Amino Acids

76.94

Weight (kDa)

6.61

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 77 - 126 4.9e-11 PPR repeat family
PPR_2 PF13041 279 - 328 3.6e-09 PPR repeat family
PPR PF01535 282 - 311 1.1e-07 PPR repeat
PPR_2 PF13041 381 - 429 3.8e-06 PPR repeat family
E_motif PF20431 498 - 560 7.8e-21 E motif
Eplus_motif PF20430 565 - 590 1.6e-06 E+ motif
DYW_deaminase PF14432 596 - 688 4.4e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08820
fragaria_vesca FvH4_6g10271
malus_domestica MD04G1168200.v1.1 MD09G1180100.v1.1
prunus_persica Prupe.6G286400_v2.0.a1
pyrus_communis pycom04g01680 pycom04g14920
rosa_chinensis RchiOBHm_Chr3g0461021
rosa_laevigata RLG00000024957
rosa_multiflora Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002
rosa_rugosa Rorug03G0047900
rosa_samantha Rh3AG105200 Rh3BG109200 Rh3DG110900
rosa_wichuraiana Rw3G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 504
Acc36I ACCTGC 1 cut(s) 1388
AccII CGCG 6 cut(s) 261, 374, 671, 808, 1748, 1938
AclI AACGTT 1 cut(s) 234
AclWI GGATC 2 cut(s) 1389, 1682
AcoI YGGCCR 2 cut(s) 1390, 1764
AcsI RAATTY 2 cut(s) 931, 1700
AfaI GTAC 3 cut(s) 657, 1063, 2041
AfiI CCNNNNNNNGG 4 cut(s) 265, 658, 1058, 1111
AflIII ACRYGT 3 cut(s) 1077, 1189, 2042
AgsI TTSAA 9 cut(s) 71, 88, 247, 312, 364, 880, 917, 937, 1321
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 1 cut(s) 1956
Alw21I GWGCWC 2 cut(s) 994, 1731
Alw26I GTCTC 5 cut(s) 44, 119, 1707, 1927, 2001
AlwI GGATC 2 cut(s) 1389, 1682
AlwNI CAGNNNCTG 1 cut(s) 24
AoxI GGCC 5 cut(s) 127, 635, 1390, 1764, 1959
ApeKI GCWGC 9 cut(s) 15, 91, 1160, 1489, 1613, 1665, 1668, 1781, 1854
ApoI RAATTY 2 cut(s) 931, 1700
AseI ATTAAT 1 cut(s) 1428
Asp700I GAANNNNTTC 1 cut(s) 1256
AspLEI GCGC 4 cut(s) 168, 374, 505, 808
AspS9I GGNCC 2 cut(s) 318, 1771
AsuC2I CCSGG 2 cut(s) 335, 1662
AsuHPI GGTGA 3 cut(s) 70, 145, 206
AsuNHI GCTAGC 2 cut(s) 1013, 1870
AvaII GGWCC 2 cut(s) 318, 1771
BalI TGGCCA 1 cut(s) 1766
BanII GRGCYC 3 cut(s) 231, 994, 1731
BauI CACGAG 2 cut(s) 1706, 1724
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 2 cut(s) 994, 1731
BbvI GCAGC 9 cut(s) 27, 103, 1172, 1476, 1625, 1652, 1680, 1793, 1841
BccI CCATC 6 cut(s) 619, 730, 815, 1922, 2030, 2031
BceAI ACGGC 1 cut(s) 1377
BcgI CGANNNNNNTGC 6 cut(s) 1064, 1098, 1149, 1183, 1657, 1691
BciT130I CCWGG 1 cut(s) 1958
BciVI GTATCC 2 cut(s) 560, 1492
BcnI CCSGG 2 cut(s) 335, 1662
BcoDI GTCTC 5 cut(s) 44, 119, 1707, 1927, 2001
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 7 cut(s) 459, 981, 995, 1001, 1014, 1332, 1871
BfmI CTRYAG 1 cut(s) 1666
BfuAI ACCTGC 1 cut(s) 1388
BfuI GTATCC 2 cut(s) 560, 1492
BglII AGATCT 1 cut(s) 904
Bme1390I CCNGG 3 cut(s) 335, 1662, 1958
Bme18I GGWCC 2 cut(s) 318, 1771
BmgT120I GGNCC 2 cut(s) 318, 1771
BmiI GGNNCC 1 cut(s) 1545
BmrFI CCNGG 3 cut(s) 335, 1662, 1958
BmrI ACTGGG 1 cut(s) 1257
BmsI GCATC 5 cut(s) 280, 592, 1107, 1472, 1501
BmtI GCTAGC 2 cut(s) 1017, 1874
BmuI ACTGGG 1 cut(s) 1257
BoxI GACNNNNGTC 1 cut(s) 1334
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 1634
BpuEI CTTGAG 2 cut(s) 80, 1890
BpuMI CCSGG 2 cut(s) 335, 1662
BsaI GGTCTC 1 cut(s) 44
BsaJI CCNNGG 9 cut(s) 9, 39, 124, 259, 321, 1547, 1660, 1767, 1849
BsaWI WCCGGW 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 1715, 1745
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 658, 1058, 1111
Bse1I ACTGG 2 cut(s) 1252, 2066
Bse3DI GCAATG 1 cut(s) 1875
BseBI CCWGG 1 cut(s) 1958
BseDI CCNNGG 9 cut(s) 9, 39, 124, 259, 321, 1547, 1660, 1767, 1849
BseGI GGATG 8 cut(s) 741, 844, 1134, 1283, 1376, 1414, 1487, 1914
BseLI CCNNNNNNNGG 4 cut(s) 265, 658, 1058, 1111
BseMI GCAATG 1 cut(s) 1875
BseMII CTCAG 3 cut(s) 519, 822, 1569
BseNI ACTGG 2 cut(s) 1252, 2066
BseRI GAGGAG 5 cut(s) 107, 140, 1562, 1844, 1847
BseXI GCAGC 9 cut(s) 27, 103, 1172, 1476, 1625, 1652, 1680, 1793, 1841
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 1416
Bsh1236I CGCG 6 cut(s) 261, 374, 671, 808, 1748, 1938
BshFI GGCC 5 cut(s) 129, 637, 1392, 1766, 1961
BsiHKAI GWGCWC 2 cut(s) 994, 1731
BsiSI CCGG 4 cut(s) 184, 335, 941, 1662
BslFI GGGAC 2 cut(s) 1619, 1705
BslI CCNNNNNNNGG 4 cut(s) 265, 658, 1058, 1111
BsmAI GTCTC 5 cut(s) 44, 119, 1707, 1927, 2001
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 1619, 1705
BsmI GAATGC 1 cut(s) 1162
BsnI GGCC 5 cut(s) 129, 637, 1392, 1766, 1961
Bso31I GGTCTC 1 cut(s) 44
Bsp1286I GDGCHC 3 cut(s) 231, 994, 1731
Bsp143I GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
Bsp19I CCATGG 1 cut(s) 1547
BspANI GGCC 5 cut(s) 129, 637, 1392, 1766, 1961
BspCNI CTCAG 3 cut(s) 520, 823, 1568
BspFNI CGCG 6 cut(s) 261, 374, 671, 808, 1748, 1938
BspLI GGNNCC 1 cut(s) 1545
BspMAI CTGCAG 1 cut(s) 1670
BspMI ACCTGC 1 cut(s) 1388
BspOI GCTAGC 2 cut(s) 1017, 1874
BspPI GGATC 2 cut(s) 1389, 1682
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1875
BsrI ACTGG 2 cut(s) 1252, 2066
BssECI CCNNGG 9 cut(s) 9, 39, 124, 259, 321, 1547, 1660, 1767, 1849
BssMI GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
BssSI CACGAG 2 cut(s) 1706, 1724
BssT1I CCWWGG 4 cut(s) 9, 39, 1547, 1767
Bst2BI CACGAG 2 cut(s) 1706, 1724
Bst2UI CCWGG 1 cut(s) 1958
Bst4CI ACNGT 2 cut(s) 308, 1862
Bst6I CTCTTC 3 cut(s) 527, 914, 1821
BstAPI GCANNNNNTGC 1 cut(s) 24
BstC8I GCNNGC 8 cut(s) 25, 102, 370, 501, 1015, 1487, 1764, 1872
BstDEI CTNAG 4 cut(s) 528, 647, 831, 1555
BstDSI CCRYGG 2 cut(s) 259, 1547
BstF5I GGATG 8 cut(s) 741, 844, 1134, 1283, 1376, 1414, 1487, 1914
BstFNI CGCG 6 cut(s) 261, 374, 671, 808, 1748, 1938
BstHHI GCGC 4 cut(s) 168, 374, 505, 808
BstKTI GATC 8 cut(s) 907, 1074, 1144, 1384, 1628, 1677, 1983, 1998
BstMAI GTCTC 5 cut(s) 44, 119, 1707, 1927, 2001
BstMBI GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
BstMWI GCNNNNNNNGC 9 cut(s) 24, 29, 97, 602, 668, 1517, 1892, 1944, 1950
BstNI CCWGG 1 cut(s) 1958
BstNSI RCATGY 5 cut(s) 104, 503, 1081, 1193, 2046
BstPAI GACNNNNGTC 1 cut(s) 1334
BstSCI CCNGG 3 cut(s) 333, 1660, 1956
BstSFI CTRYAG 1 cut(s) 1666
BstUI CGCG 6 cut(s) 261, 374, 671, 808, 1748, 1938
BstV1I GCAGC 9 cut(s) 27, 103, 1172, 1476, 1625, 1652, 1680, 1793, 1841
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 2 cut(s) 904, 1381
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 2 cut(s) 904, 1381
BsuI GTATCC 2 cut(s) 560, 1492
BsuRI GGCC 5 cut(s) 129, 637, 1392, 1766, 1961
BtgI CCRYGG 2 cut(s) 259, 1547
BtgZI GCGATG 1 cut(s) 2009
BtsCI GGATG 8 cut(s) 741, 844, 1134, 1283, 1376, 1414, 1487, 1914
BtsIMutI CAGTG 1 cut(s) 1867
BveI ACCTGC 1 cut(s) 1388
Cac8I GCNNGC 8 cut(s) 25, 102, 370, 501, 1015, 1487, 1764, 1872
CaiI CAGNNNCTG 1 cut(s) 24
CfoI GCGC 4 cut(s) 168, 374, 505, 808
Cfr13I GGNCC 2 cut(s) 318, 1771
Cfr42I CCGCGG 1 cut(s) 262
CpoI CGGWCCG 1 cut(s) 318
Csp6I GTAC 3 cut(s) 656, 1062, 2040
CspI CGGWCCG 1 cut(s) 318
CviQI GTAC 3 cut(s) 656, 1062, 2040
DdeI CTNAG 4 cut(s) 528, 647, 831, 1555
DpnI GATC 8 cut(s) 906, 1073, 1143, 1383, 1627, 1676, 1982, 1997
DpnII GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
DraI TTTAAA 1 cut(s) 1123
EaeI YGGCCR 2 cut(s) 1390, 1764
Eam1104I CTCTTC 3 cut(s) 527, 914, 1821
EarI CTCTTC 3 cut(s) 527, 914, 1821
EciI GGCGGA 2 cut(s) 110, 160
Ecl136II GAGCTC 2 cut(s) 992, 1729
Eco130I CCWWGG 4 cut(s) 9, 39, 1547, 1767
Eco147I AGGCCT 1 cut(s) 637
Eco24I GRGCYC 3 cut(s) 231, 994, 1731
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 2 cut(s) 318, 1771
Eco53kI GAGCTC 2 cut(s) 992, 1729
EcoICRI GAGCTC 2 cut(s) 992, 1729
EcoO109I RGGNCCY 1 cut(s) 1771
EcoRI GAATTC 1 cut(s) 1700
EcoRII CCWGG 1 cut(s) 1956
EcoT14I CCWWGG 4 cut(s) 9, 39, 1547, 1767
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 3 cut(s) 231, 994, 1731
ErhI CCWWGG 4 cut(s) 9, 39, 1547, 1767
Esp3I CGTCTC 1 cut(s) 119
FaqI GGGAC 2 cut(s) 1619, 1705
FokI GGATG 8 cut(s) 748, 851, 1141, 1290, 1383, 1421, 1494, 1901
FriOI GRGCYC 3 cut(s) 231, 994, 1731
FspAI RTGCGCAY 1 cut(s) 504
FspBI CTAG 7 cut(s) 459, 981, 995, 1001, 1014, 1332, 1871
FspI TGCGCA 1 cut(s) 504
GlaI GCGC 4 cut(s) 167, 373, 504, 807
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 1634
HaeIII GGCC 5 cut(s) 129, 637, 1392, 1766, 1961
HapII CCGG 4 cut(s) 184, 335, 941, 1662
HhaI GCGC 4 cut(s) 168, 374, 505, 808
Hin6I GCGC 4 cut(s) 166, 372, 503, 806
HinP1I GCGC 4 cut(s) 166, 372, 503, 806
HindIII AAGCTT 2 cut(s) 1107, 1413
HinfI GANTC 6 cut(s) 862, 1335, 1348, 1647, 1920, 2019
HpaII CCGG 4 cut(s) 184, 335, 941, 1662
HphI GGTGA 3 cut(s) 70, 145, 206
Hpy166II GTNNAC 3 cut(s) 1027, 1585, 1684
Hpy188I TCNGA 4 cut(s) 299, 1599, 1735, 1919
Hpy188III TCNNGA 7 cut(s) 564, 1170, 1496, 1629, 1651, 1907, 2006
Hpy8I GTNNAC 3 cut(s) 1027, 1585, 1684
HpyAV CCTTC 9 cut(s) 65, 94, 184, 212, 358, 829, 919, 1298, 1831
HpyCH4III ACNGT 2 cut(s) 308, 1862
HpyCH4IV ACGT 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 29, 97, 602, 668, 1517, 1892, 1944, 1950
HpyF3I CTNAG 4 cut(s) 528, 647, 831, 1555
HpySE526I ACGT 1 cut(s) 234
HspAI GCGC 4 cut(s) 166, 372, 503, 806
KspI CCGCGG 1 cut(s) 262
Kzo9I GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
LmnI GCTCC 8 cut(s) 165, 173, 496, 575, 989, 1095, 1466, 1840
Lsp1109I GCAGC 9 cut(s) 27, 103, 1172, 1476, 1625, 1652, 1680, 1793, 1841
LweI GCATC 5 cut(s) 280, 592, 1107, 1472, 1501
MaeI CTAG 7 cut(s) 459, 981, 995, 1001, 1014, 1332, 1871
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 791, 1787
MalI GATC 8 cut(s) 906, 1073, 1143, 1383, 1627, 1676, 1982, 1997
MboI GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
MboII GAAGA 8 cut(s) 299, 436, 544, 901, 1144, 1147, 1376, 1838
MfeI CAATTG 1 cut(s) 1505
MflI RGATCY 2 cut(s) 904, 1381
MhlI GDGCHC 3 cut(s) 231, 994, 1731
MlsI TGGCCA 1 cut(s) 1766
MluCI AATT 4 cut(s) 931, 1018, 1505, 1700
MluNI TGGCCA 1 cut(s) 1766
MlyI GAGTC 4 cut(s) 1342, 1344, 1641, 1929
MmeI TCCRAC 4 cut(s) 600, 1386, 1758, 1820
Mox20I TGGCCA 1 cut(s) 1766
Mph1103I ATGCAT 1 cut(s) 877
MroXI GAANNNNTTC 1 cut(s) 1256
MscI TGGCCA 1 cut(s) 1766
MseI TTAA 3 cut(s) 1044, 1122, 1428
MslI CAYNNNNRTG 2 cut(s) 1259, 2047
Msp20I TGGCCA 1 cut(s) 1766
MspA1I CMGCKG 3 cut(s) 261, 1671, 1784
MspI CCGG 4 cut(s) 184, 335, 941, 1662
MspR9I CCNGG 3 cut(s) 335, 1662, 1958
MunI CAATTG 1 cut(s) 1505
Mva1269I GAATGC 1 cut(s) 1162
MvaI CCWGG 1 cut(s) 1958
MvnI CGCG 6 cut(s) 261, 374, 671, 808, 1748, 1938
MwoI GCNNNNNNNGC 9 cut(s) 24, 29, 97, 602, 668, 1517, 1892, 1944, 1950
NciI CCSGG 2 cut(s) 335, 1662
NcoI CCATGG 1 cut(s) 1547
NdeII GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
NheI GCTAGC 2 cut(s) 1013, 1870
NlaIV GGNNCC 1 cut(s) 1545
NmeAIII GCCGAG 2 cut(s) 105, 1830
NsbI TGCGCA 1 cut(s) 504
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 5 cut(s) 104, 503, 1081, 1193, 2046
PaeI GCATGC 2 cut(s) 104, 503
PceI AGGCCT 1 cut(s) 637
PciI ACATGT 3 cut(s) 1077, 1189, 2042
PcsI WCGNNNNNNNCGW 3 cut(s) 1445, 1731, 1815
PctI GAATGC 1 cut(s) 1162
PdmI GAANNNNTTC 1 cut(s) 1256
PfeI GAWTC 2 cut(s) 862, 2019
PfoI TCCNGGA 1 cut(s) 333
PleI GAGTC 4 cut(s) 1342, 1343, 1641, 1928
PpsI GAGTC 4 cut(s) 1342, 1343, 1641, 1928
PpuMI RGGWCCY 1 cut(s) 1771
PscI ACATGT 3 cut(s) 1077, 1189, 2042
PshAI GACNNNNGTC 1 cut(s) 1334
PshBI ATTAAT 1 cut(s) 1428
Psp124BI GAGCTC 2 cut(s) 994, 1731
Psp1406I AACGTT 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 1771
Psp6I CCWGG 1 cut(s) 1956
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 1 cut(s) 1956
PspN4I GGNNCC 1 cut(s) 1545
PspPI GGNCC 2 cut(s) 318, 1771
PspPPI RGGWCCY 1 cut(s) 1771
PstI CTGCAG 1 cut(s) 1670
PstNI CAGNNNCTG 1 cut(s) 24
PsuI RGATCY 2 cut(s) 904, 1381
PvuII CAGCTG 2 cut(s) 1671, 1784
RsaI GTAC 3 cut(s) 657, 1063, 2041
RsaNI GTAC 3 cut(s) 656, 1062, 2040
RseI CAYNNNNRTG 2 cut(s) 1259, 2047
Rsr2I CGGWCCG 1 cut(s) 318
RsrII CGGWCCG 1 cut(s) 318
SacI GAGCTC 2 cut(s) 994, 1731
SacII CCGCGG 1 cut(s) 262
SaqAI TTAA 3 cut(s) 1044, 1122, 1428
Sau3AI GATC 8 cut(s) 904, 1071, 1141, 1381, 1625, 1674, 1980, 1995
Sau96I GGNCC 2 cut(s) 318, 1771
SchI GAGTC 4 cut(s) 1342, 1344, 1641, 1929
ScrFI CCNGG 3 cut(s) 335, 1662, 1958
SduI GDGCHC 3 cut(s) 231, 994, 1731
SfaNI GCATC 5 cut(s) 280, 592, 1107, 1472, 1501
SfcI CTRYAG 1 cut(s) 1666
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 2 cut(s) 318, 1771
SmiMI CAYNNNNRTG 2 cut(s) 1259, 2047
SmlI CTYRAG 2 cut(s) 95, 1905
SmoI CTYRAG 2 cut(s) 95, 1905
SpeI ACTAGT 1 cut(s) 458
SphI GCATGC 2 cut(s) 104, 503
Sse9I AATT 4 cut(s) 931, 1018, 1505, 1700
SseBI AGGCCT 1 cut(s) 637
SspMI CTAG 7 cut(s) 459, 981, 995, 1001, 1014, 1332, 1871
SstI GAGCTC 2 cut(s) 994, 1731
StuI AGGCCT 1 cut(s) 637
StyD4I CCNGG 3 cut(s) 333, 1660, 1956
StyI CCWWGG 4 cut(s) 9, 39, 1547, 1767
TaaI ACNGT 2 cut(s) 308, 1862
TaiI ACGT 1 cut(s) 237
TaqI TCGA 7 cut(s) 132, 177, 1074, 1439, 1677, 1818, 2005
TaqII GACCGA 1 cut(s) 335
TasI AATT 4 cut(s) 931, 1018, 1505, 1700
TauI GCSGC 1 cut(s) 1947
TfiI GAWTC 2 cut(s) 862, 2019
Tru1I TTAA 3 cut(s) 1044, 1122, 1428
Tru9I TTAA 3 cut(s) 1044, 1122, 1428
TscAI CASTG 1 cut(s) 1867
TseI GCWGC 9 cut(s) 15, 91, 1160, 1489, 1613, 1665, 1668, 1781, 1854
TspGWI ACGGA 3 cut(s) 709, 740, 1200
TspRI CASTG 1 cut(s) 1867
VpaK11BI GGWCC 2 cut(s) 318, 1771
VspI ATTAAT 1 cut(s) 1428
XapI RAATTY 2 cut(s) 931, 1700
XceI RCATGY 5 cut(s) 104, 503, 1081, 1193, 2046
XmnI GAANNNNTTC 1 cut(s) 1256
XspI CTAG 7 cut(s) 459, 981, 995, 1001, 1014, 1332, 1871
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.