Rh3AG105200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014523
Physical Location & Seq
Reverse (-)
8831387 .. 8834725
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG105200.1

Sequence Viewer

Length: 2496 bp
ATGACCGCCTTGGCCAGTAGAGTGTCCCCTGCAATTTCCAAGGCTTTGGAGACCAAGCGGTGCCTCGTTGAAGGCCTCACCTCCTTCAAGCACCTCAAGCATGCCCACGCTCGGCTGCTCCGCCTCGGCCTCGGCCAGGACAACTACCTTCTCAACTTGGTCTTGCGCTCCGCCTTCGATTTTGGGCAGACCGACTACGCTCGTACCGTCTTTCACCAAATCACAGAGCCCAACATTTATCTCTGGAACACCATTATCCGGGGATTGGTTTCGAACGAATGTTGGGAAGATGCAGTCAGATTCTACGGTTCAATGCGGAACGAGGGGTTCTTCCCCGACAGCTACACTTTCCCTTTTGTTTTGAAGGCGTGTGCGAGGCGTTTGGACTTGCAATTGGGGTTGAAGATTCACACACTTGTGGTGAAGACGGGCTTCGACTTTGATGTGTATGTGAAAACTAGTTTGCTCTGCCTGTATGCGAAGTGTGGCTATATGGAACATGCCCATAAGATATTCGATGATTTGCCTGAGAAGAATGTTGTTTCTTGGACTGCCGTAGTTTCCGGGTATATTGGAGCTGGGAAGTATAGGGAAGCTATTGATACATTTCTGAGGTTGTTGGAGATGGGTTTGAGGCCTGATAGTCTAAGCCTAGTTCGGGCTTTATCGGCGTGTAGTCAGTTAGGGGATTTACGCGGTGGGGAGTGGATAGATAATTACATTACGGAGATTGGGATGGCGAGGAATGTGTTTGTGGCTACCTCTTTGGTTGATTTGTATGCCAAGTGTGGTAACATGGAGAAAGCGCGTCTTGTGTTTGATGGAATAGCTGAGAAGGATATAGTTGCTTGGAGTAGCATGATTCAGGGATATGCATCGAATGGGCTTCCTAAAGAAGCCGTAGACCTCTTCTTTCAAATGCAGAAAGAGAACTTGAAACCAGATTGTTATGCCATGGTAGGGGTGCTTTCTGCTTGTTCTAGATTAGGAGCTCTAGAGCTAGGGGAGTGGGCTAGCAATTTGGTGGACAGGAATGAAATTTTTATTAACCCTGTTCTTGGTACAGCTCTGATTGACATGTATGCGAAATGTGGGAGCATGGTCCAAGCTTGGGAAGTCTTTAAAGGGATGAAGAAGAAAGACCATGTAGTTTGGAATGCAGCGATGTCTGGATTAGCTATGAACGGACATGTCAAAGCTGTGTTCGGACTATTTGGACAAGTGGAGAAATATGGATTTAGAGCTAATGGGAACACTTTCATGGGCTTGCTTTGTGGATGTTCTCATGCTGGTCTGGTTGATGAAGGCCGTAGGTATTTCAATAACATGACTAGGGTCTATTCATTGACTCCTATGATTGAGCATTATGGATGTATGGTGGATCTTCTTGGCCGTGCGGGTTTGTTGGATGAAGCTTATCAGTTGATTGAAAGTATGCCAATGAAGGCGAACTCTGTTGTTTGGGGAGCGTTGTTGGGTGGATGTAGGCTGCATCGGGATACTCAATTGGCTGAACTCGCACTGAAACAACTCATTGAGCTCGAACCATGGAACTCAGCACATTATGTTCTCCTCTCAAATGTCTACTCTGCAAGTCAGAAATGGGATGAGGCAGCCAACATTAGATCAAGAATGAATGAGCAAGGGCTGCAGAAAATCCCAGGTTACAGCTGGATCGAAGTAAACGGGGTTGTTCACGAATTCCTCGTGGGAGACAAGTCCCACGAGCTGTCCGACAAGATATACGCGAAACTCGACGAGCTGGCCAAGGATCTAAAAGTAGCCGGTTATGTTCCAACCACGGATTTCGTGTTGTTCGACATAGAAGAGGAAGAAAAGCAGCATTTCCTCGGTTGTCACAGCGAGAAGCTCGCCATTGCATTTGCTCTCATCGCCACTGCCCCCCAAGACACCATTCGAGTTTCAAAGAACCTCCGCGTATGCGGCGATTGCCACCAGGCCATAAAGCTCATCTCCAAGATCACAGGGAGAGAGATCATTGTTCGCGACAATAACCGATTCCATCGGTTCCTTGATGCCGCCAAAAAACCTCTCTACAGTGAGAACCCTAAATCGCATCCCAAGCTATCCAAAACGACGTCGTCGCAGAGCGTCGGAGCTCCGAGGGAAGCAGAGCTCACTGCAGGAATTATTGGGCACAAATCGAAGCGGTTGAAGTTGGAGGGAGAGATGGAGACTTCGAGCAGCTCACAGAGGGAGAAAAGCCACGCGCCGCTGAAGGAGGTTGTGTCGGAATGCGTGAAGCGGTGGTTCAAGGATACTCTGAAAGAGGCCAAAGCCGGCGATATTAATATGCAGGTGTTGGTGGGGCAGATGTACTACAGCGGCTATGGTGTTCCCAGAGATGCCCATTTGGGGAGAGTATGGATCACAAGAGCATCGAGGACGCGGTCTTCAGCTTGGAAAGTGTGTGAAAAGCCACCAGGTTATAATGCAAGTGATTCAGATTCAGATGAATTGAAGGGTGAGTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

831

Amino Acids

92.94

Weight (kDa)

8.11

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 77 - 126 3e-11 PPR repeat family
PPR_2 PF13041 279 - 327 1.2e-09 PPR repeat family
PPR PF01535 282 - 311 3.6e-08 PPR repeat
E_motif PF20431 498 - 560 4.3e-19 E motif
Eplus_motif PF20430 565 - 590 6.1e-07 E+ motif
DYW_deaminase PF14432 596 - 679 8.7e-33 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08820
fragaria_vesca FvH4_6g10271
malus_domestica MD04G1168200.v1.1 MD09G1180100.v1.1
prunus_persica Prupe.6G286400_v2.0.a1
pyrus_communis pycom04g01680 pycom04g14920
rosa_chinensis RchiOBHm_Chr3g0461021
rosa_laevigata RLG00000024957
rosa_multiflora Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002
rosa_rugosa Rorug03G0047900
rosa_samantha Rh3AG105200 Rh3BG109200 Rh3DG110900
rosa_wichuraiana Rw3G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2451
AarI CACCTGC 1 cut(s) 2308
AatII GACGTC 1 cut(s) 2102
Acc36I ACCTGC 1 cut(s) 2308
AccB1I GGYRCC 1 cut(s) 60
AccI GTMKAC 2 cut(s) 903, 1584
AccII CGCG 7 cut(s) 696, 808, 1748, 1938, 2007, 2231, 2410
AclWI GGATC 4 cut(s) 1389, 1682, 1779, 2396
AcoI YGGCCR 4 cut(s) 12, 133, 1390, 1764
AcsI RAATTY 2 cut(s) 1038, 1700
AcuI CTGAAG 2 cut(s) 2258, 2400
AcyI GRCGYC 1 cut(s) 2099
AfaI GTAC 3 cut(s) 205, 1063, 2339
AfiI CCNNNNNNNGG 9 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111, 2376
AflIII ACRYGT 2 cut(s) 1077, 1189
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 4 cut(s) 135, 1660, 1956, 2443
AjuI GAANNNNNNNTTGG 2 cut(s) 1899, 1931
AleI CACNNNNGTG 1 cut(s) 416
Alw21I GWGCWC 4 cut(s) 994, 1542, 2122, 2139
Alw26I GTCTC 3 cut(s) 44, 1707, 2189
AlwI GGATC 4 cut(s) 1389, 1682, 1779, 2396
ApeKI GCWGC 7 cut(s) 115, 1160, 1489, 1613, 1648, 1840, 2205
ApoI RAATTY 2 cut(s) 1038, 1700
AseI ATTAAT 1 cut(s) 2310
Asp700I GAANNNNTTC 1 cut(s) 1256
AspLEI GCGC 3 cut(s) 168, 808, 2233
AspS9I GGNCC 1 cut(s) 1102
AsuC2I CCSGG 2 cut(s) 260, 565
AsuHPI GGTGA 3 cut(s) 70, 206, 433
AsuII TTCGAA 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 1013
AvaII GGWCC 1 cut(s) 1102
BaeGI GKGCMC 1 cut(s) 2160
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BalI TGGCCA 2 cut(s) 14, 1766
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 5 cut(s) 231, 994, 1542, 2122, 2139
BauI CACGAG 2 cut(s) 1706, 1724
BbsI GAAGAC 2 cut(s) 431, 2406
Bbv12I GWGCWC 4 cut(s) 994, 1542, 2122, 2139
BbvI GCAGC 7 cut(s) 102, 1172, 1476, 1625, 1635, 1852, 2217
BccI CCATC 5 cut(s) 619, 730, 815, 2031, 2185
BceAI ACGGC 4 cut(s) 539, 884, 1293, 1377
BciT130I CCWGG 4 cut(s) 137, 1662, 1958, 2445
BciVI GTATCC 2 cut(s) 1492, 2272
BcnI CCSGG 2 cut(s) 260, 565
BcoDI GTCTC 3 cut(s) 44, 1707, 2189
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 7 cut(s) 459, 653, 981, 995, 1001, 1014, 1332
BfmI CTRYAG 4 cut(s) 1649, 2056, 2142, 2341
BfuAI ACCTGC 1 cut(s) 2308
BfuI GTATCC 2 cut(s) 1492, 2272
Bme1390I CCNGG 6 cut(s) 137, 260, 565, 1662, 1958, 2445
Bme18I GGWCC 1 cut(s) 1102
BmgT120I GGNCC 1 cut(s) 1102
BmiI GGNNCC 2 cut(s) 62, 2030
BmrFI CCNGG 6 cut(s) 137, 260, 565, 1662, 1958, 2445
BmsI GCATC 7 cut(s) 280, 884, 1501, 2026, 2086, 2356, 2408
BmtI GCTAGC 1 cut(s) 1017
BoxI GACNNNNGTC 1 cut(s) 1334
BpiI GAAGAC 2 cut(s) 431, 2406
Bpu14I TTCGAA 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 260, 565
BsaBI GATNNNNATC 1 cut(s) 874
BsaHI GRCGYC 1 cut(s) 2099
BsaI GGTCTC 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 2234, 2264
Bsc4I CCNNNNNNNGG 9 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111, 2376
Bse118I RCCGGY 2 cut(s) 1784, 2300
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 1875
Bse8I GATNNNNATC 1 cut(s) 874
BseBI CCWGG 4 cut(s) 137, 1662, 1958, 2445
BseGI GGATG 8 cut(s) 741, 1134, 1283, 1376, 1414, 1487, 1612, 2077
BseJI GATNNNNATC 1 cut(s) 874
BseLI CCNNNNNNNGG 9 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111, 2376
BseMI GCAATG 1 cut(s) 1875
BseMII CTCAG 4 cut(s) 519, 602, 822, 1569
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 1562
BseSI GKGCMC 1 cut(s) 2160
BseXI GCAGC 7 cut(s) 102, 1172, 1476, 1625, 1635, 1852, 2217
BseYI CCCAGC 1 cut(s) 578
Bsh1236I CGCG 7 cut(s) 696, 808, 1748, 1938, 2007, 2231, 2410
BshNI GGYRCC 1 cut(s) 60
BsiHKAI GWGCWC 4 cut(s) 994, 1542, 2122, 2139
BsiSI CCGG 4 cut(s) 259, 564, 1785, 2301
BslFI GGGAC 2 cut(s) 10, 1705
BslI CCNNNNNNNGG 9 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111, 2376
BsmAI GTCTC 3 cut(s) 44, 1707, 2189
BsmFI GGGAC 2 cut(s) 10, 1705
BsmI GAATGC 2 cut(s) 1162, 2261
Bso31I GGTCTC 1 cut(s) 44
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 6 cut(s) 231, 994, 1542, 2122, 2139, 2160
Bsp143I GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
Bsp19I CCATGG 2 cut(s) 954, 1547
Bsp68I TCGCGA 1 cut(s) 2007
BspCNI CTCAG 4 cut(s) 520, 603, 823, 1568
BspFNI CGCG 7 cut(s) 696, 808, 1748, 1938, 2007, 2231, 2410
BspLI GGNNCC 2 cut(s) 62, 2030
BspMAI CTGCAG 2 cut(s) 1653, 2146
BspMI ACCTGC 1 cut(s) 2308
BspOI GCTAGC 1 cut(s) 1017
BspPI GGATC 4 cut(s) 1389, 1682, 1779, 2396
BspT104I TTCGAA 1 cut(s) 272
BspT107I GGYRCC 1 cut(s) 60
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1875
BsrFI RCCGGY 2 cut(s) 1784, 2300
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 2 cut(s) 1784, 2300
BssMI GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
BssNI GRCGYC 1 cut(s) 2099
BssSI CACGAG 2 cut(s) 1706, 1724
BssT1I CCWWGG 5 cut(s) 9, 39, 954, 1547, 1767
Bst2BI CACGAG 2 cut(s) 1706, 1724
Bst2UI CCWGG 4 cut(s) 137, 1662, 1958, 2445
Bst4CI ACNGT 3 cut(s) 208, 308, 2060
Bst6I CTCTTC 2 cut(s) 914, 1821
BstACI GRCGYC 1 cut(s) 2099
BstAPI GCANNNNNTGC 1 cut(s) 1648
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 6 cut(s) 102, 1015, 1268, 1764, 1872, 2302
BstDEI CTNAG 5 cut(s) 528, 611, 647, 831, 1555
BstDSI CCRYGG 3 cut(s) 954, 1547, 1800
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 8 cut(s) 741, 1134, 1283, 1376, 1414, 1487, 1612, 2077
BstFNI CGCG 7 cut(s) 696, 808, 1748, 1938, 2007, 2231, 2410
BstHHI GCGC 3 cut(s) 168, 808, 2233
BstKTI GATC 7 cut(s) 1384, 1628, 1677, 1774, 1983, 1998, 2391
BstMAI GTCTC 3 cut(s) 44, 1707, 2189
BstMBI GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
BstMWI GCNNNNNNNGC 8 cut(s) 97, 668, 1517, 1648, 1892, 1944, 1950, 2083
BstNI CCWGG 4 cut(s) 137, 1662, 1958, 2445
BstNSI RCATGY 4 cut(s) 104, 503, 1081, 1193
BstPAI GACNNNNGTC 1 cut(s) 1334
BstSCI CCNGG 6 cut(s) 135, 258, 563, 1660, 1956, 2443
BstSFI CTRYAG 4 cut(s) 1649, 2056, 2142, 2341
BstSLI GKGCMC 1 cut(s) 2160
BstUI CGCG 7 cut(s) 696, 808, 1748, 1938, 2007, 2231, 2410
BstV1I GCAGC 7 cut(s) 102, 1172, 1476, 1625, 1635, 1852, 2217
BstV2I GAAGAC 2 cut(s) 431, 2406
BstX2I RGATCY 2 cut(s) 1381, 1771
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 2 cut(s) 1381, 1771
BsuI GTATCC 2 cut(s) 1492, 2272
BtgI CCRYGG 3 cut(s) 954, 1547, 1800
BtgZI GCGATG 2 cut(s) 1178, 1876
BtsCI GGATG 8 cut(s) 741, 1134, 1283, 1376, 1414, 1487, 1612, 2077
BtsI GCAGTG 2 cut(s) 1896, 2139
BtsIMutI CAGTG 4 cut(s) 1520, 1896, 2065, 2139
BtuMI TCGCGA 1 cut(s) 2007
BveI ACCTGC 1 cut(s) 2308
Cac8I GCNNGC 6 cut(s) 102, 1015, 1268, 1764, 1872, 2302
CfoI GCGC 3 cut(s) 168, 808, 2233
Cfr10I RCCGGY 2 cut(s) 1784, 2300
Cfr13I GGNCC 1 cut(s) 1102
CseI GACGC 3 cut(s) 797, 2101, 2416
CsiI ACCWGGT 1 cut(s) 2443
Csp6I GTAC 3 cut(s) 204, 1062, 2338
CviQI GTAC 3 cut(s) 204, 1062, 2338
DdeI CTNAG 5 cut(s) 528, 611, 647, 831, 1555
DpnI GATC 7 cut(s) 1383, 1627, 1676, 1773, 1982, 1997, 2390
DpnII GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
DraI TTTAAA 1 cut(s) 1123
EaeI YGGCCR 4 cut(s) 12, 133, 1390, 1764
Eam1104I CTCTTC 2 cut(s) 914, 1821
EarI CTCTTC 2 cut(s) 914, 1821
EciI GGCGGA 2 cut(s) 110, 160
Ecl136II GAGCTC 4 cut(s) 992, 1540, 2120, 2137
Eco130I CCWWGG 5 cut(s) 9, 39, 954, 1547, 1767
Eco147I AGGCCT 2 cut(s) 75, 637
Eco24I GRGCYC 5 cut(s) 231, 994, 1542, 2122, 2139
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 1102
Eco53kI GAGCTC 4 cut(s) 992, 1540, 2120, 2137
Eco57I CTGAAG 2 cut(s) 2258, 2400
EcoICRI GAGCTC 4 cut(s) 992, 1540, 2120, 2137
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 1700
EcoRII CCWGG 4 cut(s) 135, 1660, 1956, 2443
EcoT14I CCWWGG 5 cut(s) 9, 39, 954, 1547, 1767
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 5 cut(s) 231, 994, 1542, 2122, 2139
ErhI CCWWGG 5 cut(s) 9, 39, 954, 1547, 1767
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 795, 827
FaqI GGGAC 2 cut(s) 10, 1705
FauI CCCGC 1 cut(s) 1390
FblI GTMKAC 2 cut(s) 903, 1584
FokI GGATG 8 cut(s) 748, 1141, 1290, 1383, 1421, 1494, 1619, 2064
FriOI GRGCYC 5 cut(s) 231, 994, 1542, 2122, 2139
FspBI CTAG 7 cut(s) 459, 653, 981, 995, 1001, 1014, 1332
GlaI GCGC 3 cut(s) 167, 807, 2232
GsaI CCCAGC 1 cut(s) 582
HapII CCGG 4 cut(s) 259, 564, 1785, 2301
HgaI GACGC 3 cut(s) 797, 2101, 2416
HhaI GCGC 3 cut(s) 168, 808, 2233
Hin1I GRCGYC 1 cut(s) 2099
Hin6I GCGC 3 cut(s) 166, 806, 2231
HinP1I GCGC 3 cut(s) 166, 806, 2231
HindIII AAGCTT 2 cut(s) 1107, 1413
HinfI GANTC 8 cut(s) 300, 406, 862, 1348, 2019, 2462, 2468, 2489
HpaII CCGG 4 cut(s) 259, 564, 1785, 2301
HphI GGTGA 3 cut(s) 70, 206, 433
Hpy166II GTNNAC 5 cut(s) 904, 1027, 1585, 1684, 1696
Hpy188III TCNNGA 8 cut(s) 244, 981, 995, 1170, 1496, 1629, 1697, 2006
Hpy8I GTNNAC 5 cut(s) 904, 1027, 1585, 1684, 1696
Hpy99I CGWCG 5 cut(s) 1760, 2101, 2104, 2107, 2117
HpyCH4III ACNGT 3 cut(s) 208, 308, 2060
HpyCH4IV ACGT 1 cut(s) 2099
HpyF10VI GCNNNNNNNGC 8 cut(s) 97, 668, 1517, 1648, 1892, 1944, 1950, 2083
HpyF3I CTNAG 5 cut(s) 528, 611, 647, 831, 1555
HpySE526I ACGT 1 cut(s) 2099
Hsp92I GRCGYC 1 cut(s) 2099
HspAI GCGC 3 cut(s) 166, 806, 2231
KroI GCCGGC 1 cut(s) 2300
KroNI GCCGGC 1 cut(s) 2302
Kzo9I GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
LmnI GCTCC 8 cut(s) 123, 173, 575, 989, 1095, 1466, 2117, 2125
Lsp1109I GCAGC 7 cut(s) 102, 1172, 1476, 1625, 1635, 1852, 2217
LweI GCATC 7 cut(s) 280, 884, 1501, 2026, 2086, 2356, 2408
MabI ACCWGGT 1 cut(s) 2443
MaeI CTAG 7 cut(s) 459, 653, 981, 995, 1001, 1014, 1332
MaeII ACGT 1 cut(s) 2099
MaeIII GTNAC 3 cut(s) 791, 1664, 1856
MalI GATC 7 cut(s) 1383, 1627, 1676, 1773, 1982, 1997, 2390
MboI GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
MfeI CAATTG 2 cut(s) 392, 1505
MflI RGATCY 2 cut(s) 1381, 1771
MhlI GDGCHC 6 cut(s) 231, 994, 1542, 2122, 2139, 2160
MlsI TGGCCA 2 cut(s) 14, 1766
MluCI AATT 9 cut(s) 33, 392, 715, 1018, 1038, 1505, 1700, 2148, 2477
MluNI TGGCCA 2 cut(s) 14, 1766
MlyI GAGTC 1 cut(s) 1342
MmeI TCCRAC 7 cut(s) 600, 1386, 1758, 1820, 2095, 2160, 2232
Mox20I TGGCCA 2 cut(s) 14, 1766
Mph1103I ATGCAT 1 cut(s) 877
MroNI GCCGGC 1 cut(s) 2300
MroXI GAANNNNTTC 1 cut(s) 1256
MscI TGGCCA 2 cut(s) 14, 1766
MseI TTAA 3 cut(s) 1047, 1122, 2310
MslI CAYNNNNRTG 2 cut(s) 416, 1259
Msp20I TGGCCA 2 cut(s) 14, 1766
MspA1I CMGCKG 3 cut(s) 1671, 2236, 2346
MspI CCGG 4 cut(s) 259, 564, 1785, 2301
MspR9I CCNGG 6 cut(s) 137, 260, 565, 1662, 1958, 2445
MunI CAATTG 2 cut(s) 392, 1505
Mva1269I GAATGC 2 cut(s) 1162, 2261
MvaI CCWGG 4 cut(s) 137, 1662, 1958, 2445
MvnI CGCG 7 cut(s) 696, 808, 1748, 1938, 2007, 2231, 2410
MwoI GCNNNNNNNGC 8 cut(s) 97, 668, 1517, 1648, 1892, 1944, 1950, 2083
NaeI GCCGGC 1 cut(s) 2302
NciI CCSGG 2 cut(s) 260, 565
NcoI CCATGG 2 cut(s) 954, 1547
NdeII GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
NgoMIV GCCGGC 1 cut(s) 2300
NheI GCTAGC 1 cut(s) 1013
NlaIV GGNNCC 2 cut(s) 62, 2030
NmeAIII GCCGAG 3 cut(s) 91, 105, 111
NmuCI GTSAC 1 cut(s) 1856
NruI TCGCGA 1 cut(s) 2007
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 4 cut(s) 104, 503, 1081, 1193
NspV TTCGAA 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 416
PaeI GCATGC 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 2308
PceI AGGCCT 2 cut(s) 75, 637
PciI ACATGT 2 cut(s) 1077, 1189
PcsI WCGNNNNNNNCGW 5 cut(s) 204, 1704, 1731, 1752, 1815
PctI GAATGC 2 cut(s) 1162, 2261
PdiI GCCGGC 1 cut(s) 2302
PdmI GAANNNNTTC 1 cut(s) 1256
PfeI GAWTC 6 cut(s) 300, 406, 862, 2019, 2462, 2468
PflFI GACNNNGTC 2 cut(s) 2101, 2410
PleI GAGTC 1 cut(s) 1342
PpsI GAGTC 1 cut(s) 1342
PscI ACATGT 2 cut(s) 1077, 1189
PshAI GACNNNNGTC 1 cut(s) 1334
PshBI ATTAAT 1 cut(s) 2310
PsiI TTATAA 1 cut(s) 2451
Psp124BI GAGCTC 4 cut(s) 994, 1542, 2122, 2139
Psp6I CCWGG 4 cut(s) 135, 1660, 1956, 2443
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 4 cut(s) 135, 1660, 1956, 2443
PspN4I GGNNCC 2 cut(s) 62, 2030
PspPI GGNCC 1 cut(s) 1102
PstI CTGCAG 2 cut(s) 1653, 2146
PsuI RGATCY 2 cut(s) 1381, 1771
PsyI GACNNNGTC 2 cut(s) 2101, 2410
PvuII CAGCTG 1 cut(s) 1671
RruI TCGCGA 1 cut(s) 2007
RsaI GTAC 3 cut(s) 205, 1063, 2339
RsaNI GTAC 3 cut(s) 204, 1062, 2338
RseI CAYNNNNRTG 2 cut(s) 416, 1259
SacI GAGCTC 4 cut(s) 994, 1542, 2122, 2139
SaqAI TTAA 3 cut(s) 1047, 1122, 2310
Sau3AI GATC 7 cut(s) 1381, 1625, 1674, 1771, 1980, 1995, 2388
Sau96I GGNCC 1 cut(s) 1102
SchI GAGTC 1 cut(s) 1342
ScrFI CCNGG 6 cut(s) 137, 260, 565, 1662, 1958, 2445
SduI GDGCHC 6 cut(s) 231, 994, 1542, 2122, 2139, 2160
SexAI ACCWGGT 1 cut(s) 2443
SfaNI GCATC 7 cut(s) 280, 884, 1501, 2026, 2086, 2356, 2408
SfcI CTRYAG 4 cut(s) 1649, 2056, 2142, 2341
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 1 cut(s) 1102
SmiMI CAYNNNNRTG 2 cut(s) 416, 1259
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 458
SphI GCATGC 1 cut(s) 104
Sse9I AATT 9 cut(s) 33, 392, 715, 1018, 1038, 1505, 1700, 2148, 2477
SseBI AGGCCT 2 cut(s) 75, 637
SspMI CTAG 7 cut(s) 459, 653, 981, 995, 1001, 1014, 1332
SstI GAGCTC 4 cut(s) 994, 1542, 2122, 2139
StuI AGGCCT 2 cut(s) 75, 637
StyD4I CCNGG 6 cut(s) 135, 258, 563, 1660, 1956, 2443
StyI CCWWGG 5 cut(s) 9, 39, 954, 1547, 1767
TaaI ACNGT 3 cut(s) 208, 308, 2060
TaiI ACGT 1 cut(s) 2102
TaqII GACCGA 1 cut(s) 206
TasI AATT 9 cut(s) 33, 392, 715, 1018, 1038, 1505, 1700, 2148, 2477
TatI WGTACW 1 cut(s) 2337
TauI GCSGC 4 cut(s) 1947, 2042, 2236, 2349
TfiI GAWTC 6 cut(s) 300, 406, 862, 2019, 2462, 2468
Tru1I TTAA 3 cut(s) 1047, 1122, 2310
Tru9I TTAA 3 cut(s) 1047, 1122, 2310
TscAI CASTG 4 cut(s) 1527, 1903, 2065, 2146
TseFI GTSAC 1 cut(s) 1856
TseI GCWGC 7 cut(s) 115, 1160, 1489, 1613, 1648, 1840, 2205
Tsp45I GTSAC 1 cut(s) 1856
TspGWI ACGGA 3 cut(s) 740, 1200, 1817
TspRI CASTG 4 cut(s) 1527, 1903, 2065, 2146
Tth111I GACNNNGTC 2 cut(s) 2101, 2410
VpaK11BI GGWCC 1 cut(s) 1102
VspI ATTAAT 1 cut(s) 2310
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 2 cut(s) 1038, 1700
XbaI TCTAGA 2 cut(s) 980, 994
XceI RCATGY 4 cut(s) 104, 503, 1081, 1193
XcmI CCANNNNNNNNNTGG 1 cut(s) 1668
XmiI GTMKAC 2 cut(s) 903, 1584
XmnI GAANNNNTTC 1 cut(s) 1256
XspI CTAG 7 cut(s) 459, 653, 981, 995, 1001, 1014, 1332
ZraI GACGTC 1 cut(s) 2100
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.