Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014523

Physical Location & Seq

Genomic Coordinates Forward (+)

15452113 .. 15452511

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1180100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATCCTGACAAGGAGGTGCTTCTACATCTGAAAGCGTGTGCGAGGCGATCGGACTTCCAATTGGGTATGAACGTTCATACCCTTGTGGTGAAAACGGAGTTCGACTTCGATGTTTATGTTAAAACCTGTTTGCTCTGTTTGTATGTGAAATGTGGGTATTTGGAACATGCACATAATATATTTGATGAAATGCCGGAGAAAAATGTTGTTTTTTGGACTACCGTGATTTGTGGGTACATTGAAGCTCGCCGGTACAGAGAAGCTATTGATACGTTTTGCGGGTTGTTGGAGATGGGTTTGAGGTCTAATAGTTTTAGCCTTGTTCGGGTTTTATTTGCATGTGGGAGGTTAGGGGATATAGGCAGTGGGGTGGGGAATGGATTGATGGATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

133

Amino Acids

14.97

Weight (kDa)

6.05

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08820
fragaria_vesca	FvH4_6g10271
malus_domestica	MD04G1168200.v1.1 MD09G1180100.v1.1
prunus_persica	Prupe.6G286400_v2.0.a1
pyrus_communis	pycom04g01680 pycom04g14920
rosa_chinensis	RchiOBHm_Chr3g0461021
rosa_laevigata	RLG00000024957
rosa_multiflora	Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002
rosa_rugosa	Rorug03G0047900
rosa_samantha	Rh3AG105200 Rh3BG109200 Rh3DG110900
rosa_wichuraiana	Rw3G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	282
AclI	AACGTT	1 cut(s)	75
AfaI	GTAC	2 cut(s)	239, 257
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	245
AluBI	AGCT	2 cut(s)	248, 266
AluI	AGCT	2 cut(s)	248, 266
AsuHPI	GGTGA	1 cut(s)	103
BccI	CCATC	2 cut(s)	289, 382
BciVI	GTATCC	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	53
BsiSI	CCGG	2 cut(s)	197, 253
BslI	CCNNNNNNNGG	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	252
BssAI	RCCGGY	1 cut(s)	252
BssMI	GATC	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	1 cut(s)	250
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstMCI	CGRYCG	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	173, 345
BsuI	GTATCC	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	238, 256
CviAII	CATG	2 cut(s)	170, 342
CviJI	RGCY	3 cut(s)	248, 266, 321
CviKI_1	RGCY	3 cut(s)	248, 266, 321
CviQI	GTAC	2 cut(s)	238, 256
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
FaeI	CATG	2 cut(s)	173, 345
FatI	CATG	2 cut(s)	169, 341
FauI	CCCGC	1 cut(s)	275
HapII	CCGG	2 cut(s)	197, 253
Hin1II	CATG	2 cut(s)	173, 345
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	197, 253
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	33, 55
Hpy188III	TCNNGA	1 cut(s)	8
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	75, 275
HpyCH4V	TGCA	2 cut(s)	173, 341
HpySE526I	ACGT	2 cut(s)	75, 275
Hsp92II	CATG	2 cut(s)	173, 345
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	4 cut(s)	21, 142, 210, 266
MaeII	ACGT	2 cut(s)	75, 275
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	10, 39, 297, 342
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	197, 253
MunI	CAATTG	1 cut(s)	62
NdeII	GATC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	173, 345
NspI	RCATGY	2 cut(s)	173, 345
PfeI	GAWTC	1 cut(s)	4
Ple19I	CGATCG	1 cut(s)	53
Psp1406I	AACGTT	1 cut(s)	75
PvuI	CGATCG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	239, 257
RsaNI	GTAC	2 cut(s)	238, 256
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	50
SetI	ASST	8 cut(s)	21, 78, 131, 250, 268, 278, 308, 353
Sse9I	AATT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	78, 278
TaqI	TCGA	2 cut(s)	105, 111
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	1 cut(s)	373
TspDTI	ATGAA	4 cut(s)	17, 68, 86, 204
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	373
XceI	RCATGY	2 cut(s)	173, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.