Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0014523

Physical Location & Seq

Genomic Coordinates Reverse (-)

25831782 .. 25833851

Gene Structure 2070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1168200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2070 bp

ATGACAGCCATAGCCAACAGAGCCTCCTCCCCTGCATTTTCCAAAGCCTTAGAAACCAAGCAGTGTCTCCTTCAAGGCTTCACCTCCTTCAACCACCTCAAACACGCCCACGCCCGGCTCCTCCGCCTCGGCCTCGACCAAGACAACTATCTTCTCAACCTGGTCCTCCGCTCCGGCTTCGATTTCGGTCACACCGCTTACTCCCGCCACGTCTTCCGCCAAACCGCGCAGCCCAACATCTTCCTCTGGAACACCATGATCCGCGGCTTGGTTTCCAACGATTGCTTCGACGACGCGATCCAATTCTACGGCTCGATGCGGAAAGATGGATTCTTACCGAATAGCTTTACTTACCCTTTTGTTCTGAAAGCGTGTGCAAGGCAATCGGACTTCCAATTGGGGCTGAACATTCATACCCTTGTGGTGAAAACTGGGTTCGATTTCGATGTTTATGTTAAAACCAGTTTGCTCTGCTTATATGCGAAATGTGGGTATTTGGAACATGCACATCAGGTATTTGATGAAATGCCGGAGAAAAATGTTGTTTCTTGGACTGCCGTGATTTGTGGGTACATTGAAGCTCGCCGGTACAGAGAAGCTATTGATACATTTCGCGGGTTGTTGGAGATGGGTTTGAGGCCTGATAGTTTTAGCCTTGTTAGGGTTTTATCTGCTTGTGGGAGGTTAGGGGATATAGGCAGTGGGGAATGGATTGATGGATACATAACGGAGATTGGTATGGGGAGGAATGTGTTTGTTGCTACCTCTTTAGTTGATATGTTTATCAAGTGCGGAAATATGGAGAAAGCTCGTCGTGTCTTTGATGTGATGCCCGAGAAGGATATAGTTTCTTGGAGCAGCATGATTCAGGGATATGCATCAAATGGGCTTCCTAAAGAAGCCATAGACCTCTTCTTTCAAATGCAGAAGGAGAATTTGAAACCCGATTGCTATGCCATGGTCGGCGTACTTTCTGCTTGTGCAAGATTAGGAGCGCTTGAATTAGGGGACTGGGCTAGCAATTTGGTGGATAAAGATGAATTTTTCACTAACCCAGTTCTTGGTACAGCTCTAATTGACATGTATGCGAAATGTGGGAACATGGTCCTTGCTTGGGAAGTCTTTAAGGGGATGAAGAAAAAAGACCATGTTGTTTGGAATGCTGCAATGTCTGGGCTTGCTATGAATGGACATGTCAAAGCTGTGTTTGGACTATTTGGACAAGTGGGAAAAATTGGAATTCGACCTGATGGAAACACTTTCATGGGCCTGCTTTGTGGATGCTGTCATGCTGGTCTAGTTGATGAGGGCCGGAGGTATTTTAATAACATGAAGAGTGTCTTTTCCTTGACTCCGACAATTGAGCATTATGGATGTATGGTGGATCTTCTTGGCCGTGCAGGTTTGTTGGATGAAGCTTACGAGTTAATAAAAAGTATGCCAATGGAGGCGAATTCCATCATTTGGGGAGCACTGTTGGGTGGATGCCGGCTACATAGGAATACCCAATTGGCTGAACTTGTACTGAAACAACTCATAGGGCTAGAACCGTGGAACTCAGCACACTATGTTCTCCTGTCAAATATTTACTCTGCAAGTCATAAATGGAATGAGGCAGCAGATACCAGATCACAAATGAGTCAGCAAGGGATGAAGAAAATCCCGGGTTGCAGTTGGATCGAAGTAAATGGGGCTGTTCACGAATTCCTTGTCGGAGACAAGTCCCACACATTGTCAGATAAGATATACGCAAAACTTCACGAGTTGGCTAAGGAATTGAAAGCAGCAGGTTATGTTCCGACCACAGATTTTGTGTTGTTTGACATAGAAGAGGAAGAAAAGGAGCATTTCCTTGGCTGTCATAGCGAGAAGCTGGCCGTTGCATTTGGTCTGATCAGCACTGCACCTACAGATACTATCCGAGTTGTGAAGAACCTTCGTGTGTGCGGTGATTGTCATGAGGCGATAAAGCTCATCTCGAAGATTTCAGGGAGAGAGATCATCGTTCGGGACAATAACCGATTTCATTGTTTCATTGATGGTTCATGTTCATGTAAAGATTATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

690

Amino Acids

77.07

Weight (kDa)

6.74

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	78 - 127	2.3e-12	PPR repeat family
PPR_2	PF13041	179 - 226	2.1e-06	PPR repeat family
PPR_2	PF13041	280 - 329	3.3e-10	PPR repeat family
PPR	PF01535	283 - 312	1.2e-08	PPR repeat
PPR_2	PF13041	382 - 430	7.1e-07	PPR repeat family
E_motif	PF20431	499 - 561	7.1e-19	E motif
Eplus_motif	PF20430	566 - 593	2e-07	E+ motif
DYW_deaminase	PF14432	597 - 689	5.5e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08820
fragaria_vesca	FvH4_6g10271
malus_domestica	MD04G1168200.v1.1 MD09G1180100.v1.1
prunus_persica	Prupe.6G286400_v2.0.a1
pyrus_communis	pycom04g01680 pycom04g14920
rosa_chinensis	RchiOBHm_Chr3g0461021
rosa_laevigata	RLG00000024957
rosa_multiflora	Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002
rosa_rugosa	Rorug03G0047900
rosa_samantha	Rh3AG105200 Rh3BG109200 Rh3DG110900
rosa_wichuraiana	Rw3G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1391, 1778
AccB7I	CCANNNNNTGG	2 cut(s)	1061, 1464
AccBSI	CCGCTC	1 cut(s)	171
AccII	CGCG	4 cut(s)	227, 264, 296, 615
AclWI	GGATC	4 cut(s)	253, 292, 1392, 1685
AcoI	YGGCCR	2 cut(s)	1393, 1875
AcsI	RAATTY	5 cut(s)	934, 1040, 1239, 1453, 1703
AfaI	GTAC	5 cut(s)	572, 590, 969, 1066, 1524
AfeI	AGCGCT	1 cut(s)	996
AfiI	CCNNNNNNNGG	6 cut(s)	114, 268, 661, 1061, 1114, 1464
AflIII	ACRYGT	2 cut(s)	1080, 1192
AgsI	TTSAA	7 cut(s)	74, 91, 578, 920, 940, 1001, 1780
AjiI	CACGTC	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	159
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 301, 1493, 1525
AluBI	AGCT	9 cut(s)	345, 581, 599, 809, 1070, 1202, 1418, 1873, 1972
AluI	AGCT	9 cut(s)	345, 581, 599, 809, 1070, 1202, 1418, 1873, 1972
Alw21I	GWGCWC	1 cut(s)	1474
Alw26I	GTCTC	2 cut(s)	71, 1710
AlwI	GGATC	4 cut(s)	253, 292, 1392, 1685
Ama87I	CYCGRG	2 cut(s)	833, 1663
Aor51HI	AGCGCT	1 cut(s)	996
AoxI	GGCC	6 cut(s)	130, 638, 1267, 1309, 1393, 1875
ApeKI	GCWGC	5 cut(s)	229, 858, 1163, 1616, 1784
ApoI	RAATTY	5 cut(s)	934, 1040, 1239, 1453, 1703
ArsI	GACNNNNNNTTYG	2 cut(s)	1695, 1727
AspLEI	GCGC	2 cut(s)	229, 997
AspS9I	GGNCC	4 cut(s)	163, 1105, 1267, 1309
AsuC2I	CCSGG	3 cut(s)	115, 1664, 1665
AsuHPI	GGTGA	3 cut(s)	73, 436, 1961
AsuNHI	GCTAGC	1 cut(s)	1016
AvaI	CYCGRG	2 cut(s)	833, 1663
AvaII	GGWCC	2 cut(s)	163, 1105
BauI	CACGAG	1 cut(s)	1760
BbsI	GAAGAC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	1474
BbvI	GCAGC	5 cut(s)	241, 870, 1150, 1628, 1796
BccI	CCATC	6 cut(s)	320, 622, 710, 1244, 1466, 2033
BceAI	ACGGC	4 cut(s)	325, 542, 1380, 1862
BcgI	CGANNNNNNTGC	6 cut(s)	366, 400, 935, 969, 1660, 1694
BciT130I	CCWGG	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	713
BclI	TGATCA	1 cut(s)	1893
BcnI	CCSGG	3 cut(s)	115, 1664, 1665
BcoDI	GTCTC	2 cut(s)	71, 1710
BfaI	CTAG	3 cut(s)	1017, 1298, 1544
BfmI	CTRYAG	1 cut(s)	1908
BfoI	RGCGCY	1 cut(s)	998
BfuAI	ACCTGC	2 cut(s)	1391, 1778
BfuI	GTATCC	1 cut(s)	713
BisI	GCNGC	6 cut(s)	230, 265, 859, 1164, 1617, 1785
BlsI	GCNGC	6 cut(s)	231, 266, 860, 1165, 1618, 1786
Bme1390I	CCNGG	4 cut(s)	115, 161, 1664, 1665
Bme18I	GGWCC	2 cut(s)	163, 1105
BmeT110I	CYCGRG	2 cut(s)	833, 1663
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	4 cut(s)	163, 1105, 1267, 1309
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	4 cut(s)	115, 161, 1664, 1665
BmrI	ACTGGG	3 cut(s)	441, 1021, 1049
BmsI	GCATC	5 cut(s)	306, 819, 887, 1271, 1475
BmtI	GCTAGC	1 cut(s)	1020
BmuI	ACTGGG	3 cut(s)	441, 1021, 1049
BpiI	GAAGAC	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	1770
BpuMI	CCSGG	3 cut(s)	115, 1664, 1665
BsaBI	GATNNNNATC	1 cut(s)	877
BsaJI	CCNNGG	6 cut(s)	127, 262, 957, 1550, 1663, 1852
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 268, 661, 1061, 1114, 1464
Bse118I	RCCGGY	2 cut(s)	585, 1488
Bse1I	ACTGG	4 cut(s)	436, 462, 1016, 1055
Bse3DI	GCAATG	1 cut(s)	1173
Bse8I	GATNNNNATC	1 cut(s)	877
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	6 cut(s)	127, 262, 957, 1550, 1663, 1852
BseGI	GGATG	6 cut(s)	1137, 1286, 1379, 1417, 1490, 1656
BseJI	GATNNNNATC	1 cut(s)	877
BseLI	CCNNNNNNNGG	6 cut(s)	114, 268, 661, 1061, 1114, 1464
BseMI	GCAATG	1 cut(s)	1173
BseMII	CTCAG	1 cut(s)	1572
BseNI	ACTGG	4 cut(s)	436, 462, 1016, 1055
BseRI	GAGGAG	2 cut(s)	16, 110
BseXI	GCAGC	5 cut(s)	241, 870, 1150, 1628, 1796
BsgI	GTGCAG	2 cut(s)	1419, 1887
Bsh1236I	CGCG	4 cut(s)	227, 264, 296, 615
BshFI	GGCC	6 cut(s)	132, 640, 1269, 1311, 1395, 1877
BsiHKAI	GWGCWC	1 cut(s)	1474
BsiHKCI	CYCGRG	2 cut(s)	833, 1663
BsiSI	CCGG	7 cut(s)	115, 174, 530, 586, 1312, 1489, 1664
BslFI	GGGAC	3 cut(s)	1022, 1708, 2024
BslI	CCNNNNNNNGG	6 cut(s)	114, 268, 661, 1061, 1114, 1464
BsmAI	GTCTC	2 cut(s)	71, 1710
BsmFI	GGGAC	3 cut(s)	1022, 1708, 2024
BsmI	GAATGC	1 cut(s)	1165
BsnI	GGCC	6 cut(s)	132, 640, 1269, 1311, 1395, 1877
BsoBI	CYCGRG	2 cut(s)	833, 1663
Bsp1286I	GDGCHC	1 cut(s)	1474
Bsp143I	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
Bsp19I	CCATGG	1 cut(s)	957
BspANI	GGCC	6 cut(s)	132, 640, 1269, 1311, 1395, 1877
BspCNI	CTCAG	1 cut(s)	1571
BspFNI	CGCG	4 cut(s)	227, 264, 296, 615
BspHI	TCATGA	1 cut(s)	1957
BspLI	GGNNCC	1 cut(s)	119
BspMI	ACCTGC	2 cut(s)	1391, 1778
BspOI	GCTAGC	1 cut(s)	1020
BspPI	GGATC	4 cut(s)	253, 292, 1392, 1685
BsrBI	CCGCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	1173
BsrFI	RCCGGY	2 cut(s)	585, 1488
BsrI	ACTGG	4 cut(s)	436, 462, 1016, 1055
BssAI	RCCGGY	2 cut(s)	585, 1488
BssECI	CCNNGG	6 cut(s)	127, 262, 957, 1550, 1663, 1852
BssMI	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
BssSI	CACGAG	1 cut(s)	1760
BssT1I	CCWWGG	2 cut(s)	957, 1852
Bst2BI	CACGAG	1 cut(s)	1760
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	2 cut(s)	1476, 1551
Bst6I	CTCTTC	3 cut(s)	917, 1328, 1824
BstC8I	GCNNGC	6 cut(s)	583, 1018, 1179, 1271, 1490, 1875
BstDEI	CTNAG	3 cut(s)	49, 1558, 1770
BstDSI	CCRYGG	3 cut(s)	262, 957, 1550
BstF5I	GGATG	6 cut(s)	1137, 1286, 1379, 1417, 1490, 1656
BstFNI	CGCG	4 cut(s)	227, 264, 296, 615
BstH2I	RGCGCY	1 cut(s)	998
BstHHI	GCGC	2 cut(s)	229, 997
BstKTI	GATC	7 cut(s)	261, 300, 1387, 1631, 1680, 1896, 2001
BstMAI	GTCTC	2 cut(s)	71, 1710
BstMBI	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 1863
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	3 cut(s)	506, 1084, 1196
BstSCI	CCNGG	4 cut(s)	113, 159, 1662, 1663
BstSFI	CTRYAG	1 cut(s)	1908
BstUI	CGCG	4 cut(s)	227, 264, 296, 615
BstV1I	GCAGC	5 cut(s)	241, 870, 1150, 1628, 1796
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	1384
BstYI	RGATCY	1 cut(s)	1384
BsuI	GTATCC	1 cut(s)	713
BsuRI	GGCC	6 cut(s)	132, 640, 1269, 1311, 1395, 1877
BtgI	CCRYGG	3 cut(s)	262, 957, 1550
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	6 cut(s)	1137, 1286, 1379, 1417, 1490, 1656
BtsI	GCAGTG	3 cut(s)	68, 706, 1899
BtsIMutI	CAGTG	4 cut(s)	68, 706, 1472, 1899
BveI	ACCTGC	2 cut(s)	1391, 1778
Cac8I	GCNNGC	6 cut(s)	583, 1018, 1179, 1271, 1490, 1875
CciI	TCATGA	1 cut(s)	1957
CfoI	GCGC	2 cut(s)	229, 997
Cfr10I	RCCGGY	2 cut(s)	585, 1488
Cfr13I	GGNCC	4 cut(s)	163, 1105, 1267, 1309
Cfr42I	CCGCGG	1 cut(s)	265
Cfr9I	CCCGGG	1 cut(s)	1663
CseI	GACGC	1 cut(s)	302
CsiI	ACCWGGT	1 cut(s)	159
Csp6I	GTAC	5 cut(s)	571, 589, 968, 1065, 1523
CspCI	CAANNNNNGTGG	2 cut(s)	1792, 1827
CviQI	GTAC	5 cut(s)	571, 589, 968, 1065, 1523
DdeI	CTNAG	3 cut(s)	49, 1558, 1770
DpnI	GATC	7 cut(s)	260, 299, 1386, 1630, 1679, 1895, 2000
DpnII	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
EaeI	YGGCCR	2 cut(s)	1393, 1875
Eam1104I	CTCTTC	3 cut(s)	917, 1328, 1824
EarI	CTCTTC	3 cut(s)	917, 1328, 1824
EciI	GGCGGA	2 cut(s)	113, 206
Eco130I	CCWWGG	2 cut(s)	957, 1852
Eco147I	AGGCCT	1 cut(s)	640
Eco47I	GGWCC	2 cut(s)	163, 1105
Eco47III	AGCGCT	1 cut(s)	996
Eco88I	CYCGRG	2 cut(s)	833, 1663
EcoRI	GAATTC	3 cut(s)	1239, 1453, 1703
EcoRII	CCWGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	957, 1852
EcoT22I	ATGCAT	1 cut(s)	880
ErhI	CCWWGG	2 cut(s)	957, 1852
FalI	AAGNNNNNCTT	2 cut(s)	1325, 1357
FaqI	GGGAC	3 cut(s)	1022, 1708, 2024
FauI	CCCGC	2 cut(s)	212, 608
FbaI	TGATCA	1 cut(s)	1893
Fnu4HI	GCNGC	6 cut(s)	230, 265, 859, 1164, 1617, 1785
FokI	GGATG	6 cut(s)	1144, 1293, 1386, 1424, 1497, 1663
Fsp4HI	GCNGC	6 cut(s)	230, 265, 859, 1164, 1617, 1785
FspBI	CTAG	3 cut(s)	1017, 1298, 1544
GlaI	GCGC	2 cut(s)	228, 996
GluI	GCNGC	6 cut(s)	230, 265, 859, 1164, 1617, 1785
HaeII	RGCGCY	1 cut(s)	998
HaeIII	GGCC	6 cut(s)	132, 640, 1269, 1311, 1395, 1877
HapII	CCGG	7 cut(s)	115, 174, 530, 586, 1312, 1489, 1664
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	2 cut(s)	229, 997
Hin6I	GCGC	2 cut(s)	227, 995
HinP1I	GCGC	2 cut(s)	227, 995
HindIII	AAGCTT	1 cut(s)	1416
HinfI	GANTC	4 cut(s)	330, 865, 1351, 1639
HpaII	CCGG	7 cut(s)	115, 174, 530, 586, 1312, 1489, 1664
HphI	GGTGA	3 cut(s)	73, 436, 1961
Hpy166II	GTNNAC	1 cut(s)	1699
Hpy188I	TCNGA	8 cut(s)	366, 388, 1356, 1715, 1738, 1800, 1893, 1922
Hpy188III	TCNNGA	6 cut(s)	247, 1700, 1760, 1958, 1978, 2009
Hpy8I	GTNNAC	1 cut(s)	1699
Hpy99I	CGWCG	3 cut(s)	293, 296, 816
HpyAV	CCTTC	5 cut(s)	80, 97, 832, 922, 1946
HpyCH4III	ACNGT	2 cut(s)	1476, 1551
HpyCH4IV	ACGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 1863
HpyF3I	CTNAG	3 cut(s)	49, 1558, 1770
HpySE526I	ACGT	1 cut(s)	210
HspAI	GCGC	2 cut(s)	227, 995
KroI	GCCGGC	1 cut(s)	1488
KroNI	GCCGGC	1 cut(s)	1490
Ksp22I	TGATCA	1 cut(s)	1893
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
LmnI	GCTCC	6 cut(s)	123, 176, 855, 992, 1469, 1843
Lsp1109I	GCAGC	5 cut(s)	241, 870, 1150, 1628, 1796
LweI	GCATC	5 cut(s)	306, 819, 887, 1271, 1475
MabI	ACCWGGT	1 cut(s)	159
MaeI	CTAG	3 cut(s)	1017, 1298, 1544
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	7 cut(s)	260, 299, 1386, 1630, 1679, 1895, 2000
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
MfeI	CAATTG	3 cut(s)	395, 1359, 1508
MflI	RGATCY	1 cut(s)	1384
MhlI	GDGCHC	1 cut(s)	1474
MlyI	GAGTC	2 cut(s)	1345, 1648
MmeI	TCCRAC	7 cut(s)	300, 603, 1379, 1389, 1655, 1693, 1823
Mph1103I	ATGCAT	1 cut(s)	880
MroNI	GCCGGC	1 cut(s)	1488
MseI	TTAA	4 cut(s)	456, 1125, 1323, 1427
MslI	CAYNNNNRTG	2 cut(s)	1262, 2050
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	7 cut(s)	115, 174, 530, 586, 1312, 1489, 1664
MspR9I	CCNGG	4 cut(s)	115, 161, 1664, 1665
MunI	CAATTG	3 cut(s)	395, 1359, 1508
Mva1269I	GAATGC	1 cut(s)	1165
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	4 cut(s)	227, 264, 296, 615
MwoI	GCNNNNNNNGC	2 cut(s)	20, 1863
NaeI	GCCGGC	1 cut(s)	1490
NciI	CCSGG	3 cut(s)	115, 1664, 1665
NcoI	CCATGG	1 cut(s)	957
NdeII	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
NgoMIV	GCCGGC	1 cut(s)	1488
NheI	GCTAGC	1 cut(s)	1016
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	188
NsiI	ATGCAT	1 cut(s)	880
NspI	RCATGY	3 cut(s)	506, 1084, 1196
PagI	TCATGA	1 cut(s)	1957
PceI	AGGCCT	1 cut(s)	640
PciI	ACATGT	2 cut(s)	1080, 1192
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PctI	GAATGC	1 cut(s)	1165
PdiI	GCCGGC	1 cut(s)	1490
PfeI	GAWTC	2 cut(s)	330, 865
PflMI	CCANNNNNTGG	2 cut(s)	1061, 1464
PkrI	GCNGC	6 cut(s)	231, 266, 860, 1165, 1618, 1786
PleI	GAGTC	2 cut(s)	1345, 1647
PpsI	GAGTC	2 cut(s)	1345, 1647
PscI	ACATGT	2 cut(s)	1080, 1192
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	4 cut(s)	163, 1105, 1267, 1309
PsuI	RGATCY	1 cut(s)	1384
RsaI	GTAC	5 cut(s)	572, 590, 969, 1066, 1524
RsaNI	GTAC	5 cut(s)	571, 589, 968, 1065, 1523
RseI	CAYNNNNRTG	2 cut(s)	1262, 2050
SacII	CCGCGG	1 cut(s)	265
SaqAI	TTAA	4 cut(s)	456, 1125, 1323, 1427
SatI	GCNGC	6 cut(s)	230, 265, 859, 1164, 1617, 1785
Sau3AI	GATC	7 cut(s)	258, 297, 1384, 1628, 1677, 1893, 1998
Sau96I	GGNCC	4 cut(s)	163, 1105, 1267, 1309
SchI	GAGTC	2 cut(s)	1345, 1648
ScrFI	CCNGG	4 cut(s)	115, 161, 1664, 1665
SduI	GDGCHC	1 cut(s)	1474
SexAI	ACCWGGT	1 cut(s)	159
SfaNI	GCATC	5 cut(s)	306, 819, 887, 1271, 1475
SfcI	CTRYAG	1 cut(s)	1908
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	163, 1105
SmaI	CCCGGG	1 cut(s)	1665
SmiMI	CAYNNNNRTG	2 cut(s)	1262, 2050
SseBI	AGGCCT	1 cut(s)	640
SspI	AATATT	1 cut(s)	1585
SspMI	CTAG	3 cut(s)	1017, 1298, 1544
StuI	AGGCCT	1 cut(s)	640
StyD4I	CCNGG	4 cut(s)	113, 159, 1662, 1663
StyI	CCWWGG	2 cut(s)	957, 1852
TaaI	ACNGT	2 cut(s)	1476, 1551
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	9 cut(s)	135, 180, 288, 314, 438, 444, 1243, 1680, 1979
TaqII	GACCGA	1 cut(s)	176
TatI	WGTACW	1 cut(s)	1522
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	330, 865
Tru1I	TTAA	4 cut(s)	456, 1125, 1323, 1427
Tru9I	TTAA	4 cut(s)	456, 1125, 1323, 1427
TscAI	CASTG	4 cut(s)	68, 706, 1479, 1906
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	5 cut(s)	229, 858, 1163, 1616, 1784
Tsp45I	GTSAC	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	743
TspMI	CCCGGG	1 cut(s)	1663
TspRI	CASTG	4 cut(s)	68, 706, 1479, 1906
Van91I	CCANNNNNTGG	2 cut(s)	1061, 1464
VpaK11BI	GGWCC	2 cut(s)	163, 1105
XapI	RAATTY	5 cut(s)	934, 1040, 1239, 1453, 1703
XceI	RCATGY	3 cut(s)	506, 1084, 1196
XmaI	CCCGGG	1 cut(s)	1663
XspI	CTAG	3 cut(s)	1017, 1298, 1544
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.