Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000601.1

Orthogroup ID

OG0014523

Physical Location & Seq

Genomic Coordinates Reverse (-)

1031 .. 1969

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000601.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgaccgccttggccagtagagtgtcccctgcaatttccaaggctttggagaccaagcagtgcctcgttgaaggcctcacctccttcaagcacctcaagcatgcccacgctcggctgctccgcctcggcctcggccaggacaactaccttctcaacttggtcttgcgctccgccttcgattttaggcagaccgactacgctcgtaccgtctttcaccaaatcacagagcccaacatttatctctggaacaccattatccggggattggtttcgaacgaatgttgggaagatgcagtcagattctacggttcaatgcggacggaggggttcttccccgacagttacacttacccttttgttttgaaggcgtgtgcgaggcgtttggacttgcaattggggttgaagattcatacgcttgtggtgaagacgggttttgactttgatgtttatgtgaaaactagtctgctttttatgtatgcgaagtgtgggtatatggaacatgcgcgtaaggtattcgatgatttgcctgagaagaatgttgtttcttggactgccgtagtttccgggtatattggagctgggaagtatagggaagctattgatacatttctgaggttgttggagatgggtttgaggcctgatagtctaagccttgttcgggctttatcggcgtgtagtcagttaggggatttacgcagtggggagtggatagataattacattacggagattgggatggcgaggaatgtgtttgtggctacctctttggttgatttgtatgccaagtgtggtaacatggagaaagcgcgtcttgtgtttgatggaatagctgagaaggatatagttgcttggagtagcatgattcagggatatgcatcgaatgggcttcctaaagaagccgtagacctcttctttcaaatgcgaggcctgatagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

312

Amino Acids

35.28

Weight (kDa)

8.43

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014523)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08820
fragaria_vesca	FvH4_6g10271
malus_domestica	MD04G1168200.v1.1 MD09G1180100.v1.1
prunus_persica	Prupe.6G286400_v2.0.a1
pyrus_communis	pycom04g01680 pycom04g14920
rosa_chinensis	RchiOBHm_Chr3g0461021
rosa_laevigata	RLG00000024957
rosa_multiflora	Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002
rosa_rugosa	Rorug03G0047900
rosa_samantha	Rh3AG105200 Rh3BG109200 Rh3DG110900
rosa_wichuraiana	Rw3G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	903
AccII	CGCG	2 cut(s)	505, 808
AciI	CCGC	4 cut(s)	6, 121, 171, 316
AcoI	YGGCCR	2 cut(s)	12, 133
AfaI	GTAC	1 cut(s)	205
AfiI	CCNNNNNNNGG	5 cut(s)	111, 136, 258, 265, 658
AgsI	TTSAA	6 cut(s)	71, 88, 312, 364, 403, 917
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	578, 596, 830
AluI	AGCT	3 cut(s)	578, 596, 830
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	6 cut(s)	12, 73, 127, 133, 635, 925
ApeKI	GCWGC	1 cut(s)	115
AspLEI	GCGC	3 cut(s)	168, 505, 808
AsuC2I	CCSGG	2 cut(s)	260, 565
AsuHPI	GGTGA	3 cut(s)	70, 206, 433
AsuII	TTCGAA	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	431
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	3 cut(s)	619, 730, 815
BceAI	ACGGC	2 cut(s)	539, 884
BciT130I	CCWGG	1 cut(s)	137
BcnI	CCSGG	2 cut(s)	260, 565
BcoDI	GTCTC	1 cut(s)	44
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	1 cut(s)	459
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	3 cut(s)	137, 260, 565
BmrFI	CCNGG	3 cut(s)	137, 260, 565
BmsI	GCATC	2 cut(s)	280, 884
BpiI	GAAGAC	1 cut(s)	431
Bpu14I	TTCGAA	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	2 cut(s)	260, 565
BsaBI	GATNNNNATC	1 cut(s)	874
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	5 cut(s)	9, 39, 124, 130, 259
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 136, 258, 265, 658
Bse1I	ACTGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	874
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	5 cut(s)	9, 39, 124, 130, 259
BseGI	GGATG	1 cut(s)	741
BseJI	GATNNNNATC	1 cut(s)	874
BseLI	CCNNNNNNNGG	5 cut(s)	111, 136, 258, 265, 658
BseMII	CTCAG	3 cut(s)	519, 602, 822
BseNI	ACTGG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	2 cut(s)	505, 808
BshFI	GGCC	6 cut(s)	14, 75, 129, 135, 637, 927
BsiSI	CCGG	2 cut(s)	259, 564
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	5 cut(s)	111, 136, 258, 265, 658
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	6 cut(s)	14, 75, 129, 135, 637, 927
Bso31I	GGTCTC	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	231
BspACI	CCGC	4 cut(s)	6, 121, 171, 316
BspANI	GGCC	6 cut(s)	14, 75, 129, 135, 637, 927
BspCNI	CTCAG	3 cut(s)	520, 603, 823
BspFNI	CGCG	2 cut(s)	505, 808
BspT104I	TTCGAA	1 cut(s)	272
BspTNI	GGTCTC	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	5 cut(s)	9, 39, 124, 130, 259
BssT1I	CCWWGG	2 cut(s)	9, 39
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	208, 308, 341
Bst6I	CTCTTC	1 cut(s)	914
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	4 cut(s)	528, 611, 647, 831
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	741
BstFNI	CGCG	2 cut(s)	505, 808
BstHHI	GCGC	3 cut(s)	168, 505, 808
BstMAI	GTCTC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 668
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	2 cut(s)	104, 503
BstSCI	CCNGG	3 cut(s)	135, 258, 563
BstUI	CGCG	2 cut(s)	505, 808
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	431
BstXI	CCANNNNNNTGG	1 cut(s)	46
BsuRI	GGCC	6 cut(s)	14, 75, 129, 135, 637, 927
BtsCI	GGATG	1 cut(s)	741
BtsI	GCAGTG	2 cut(s)	65, 703
BtsIMutI	CAGTG	2 cut(s)	65, 703
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	3 cut(s)	168, 505, 808
CseI	GACGC	1 cut(s)	797
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	4 cut(s)	101, 500, 796, 859
CviQI	GTAC	1 cut(s)	204
DdeI	CTNAG	4 cut(s)	528, 611, 647, 831
EaeI	YGGCCR	2 cut(s)	12, 133
Eam1104I	CTCTTC	1 cut(s)	914
EarI	CTCTTC	1 cut(s)	914
EciI	GGCGGA	2 cut(s)	110, 160
Eco130I	CCWWGG	2 cut(s)	9, 39
Eco147I	AGGCCT	3 cut(s)	75, 637, 927
Eco24I	GRGCYC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	2 cut(s)	9, 39
EcoT22I	ATGCAT	1 cut(s)	877
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	9, 39
FaeI	CATG	4 cut(s)	104, 503, 799, 862
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	4 cut(s)	100, 499, 795, 858
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	748
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	3 cut(s)	167, 504, 807
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	582
HaeIII	GGCC	6 cut(s)	14, 75, 129, 135, 637, 927
HapII	CCGG	2 cut(s)	259, 564
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	3 cut(s)	168, 505, 808
Hin1II	CATG	4 cut(s)	104, 503, 799, 862
Hin6I	GCGC	3 cut(s)	166, 503, 806
HinP1I	GCGC	3 cut(s)	166, 503, 806
HinfI	GANTC	3 cut(s)	300, 406, 862
HpaII	CCGG	2 cut(s)	259, 564
HphI	GGTGA	3 cut(s)	70, 206, 433
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	2 cut(s)	299, 612
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	904
HpyAV	CCTTC	6 cut(s)	65, 94, 158, 184, 358, 829
HpyCH4III	ACNGT	3 cut(s)	208, 308, 341
HpyCH4V	TGCA	4 cut(s)	32, 293, 391, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 668
HpyF3I	CTNAG	4 cut(s)	528, 611, 647, 831
Hsp92II	CATG	4 cut(s)	104, 503, 799, 862
HspAI	GCGC	3 cut(s)	166, 503, 806
LmnI	GCTCC	3 cut(s)	123, 173, 575
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	2 cut(s)	280, 884
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	341, 791
MboII	GAAGA	6 cut(s)	299, 322, 415, 436, 544, 901
MfeI	CAATTG	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	3 cut(s)	33, 392, 715
MluNI	TGGCCA	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	600
Mox20I	TGGCCA	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	877
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	2 cut(s)	259, 564
MspR9I	CCNGG	3 cut(s)	137, 260, 565
MunI	CAATTG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	137
MvnI	CGCG	2 cut(s)	505, 808
MwoI	GCNNNNNNNGC	2 cut(s)	97, 668
NciI	CCSGG	2 cut(s)	260, 565
NlaIII	CATG	4 cut(s)	104, 503, 799, 862
NmeAIII	GCCGAG	3 cut(s)	91, 105, 111
NsiI	ATGCAT	1 cut(s)	877
NspI	RCATGY	2 cut(s)	104, 503
NspV	TTCGAA	1 cut(s)	272
PaeI	GCATGC	1 cut(s)	104
PceI	AGGCCT	3 cut(s)	75, 637, 927
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	3 cut(s)	300, 406, 862
PkrI	GCNGC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
SatI	GCNGC	1 cut(s)	116
ScrFI	CCNGG	3 cut(s)	137, 260, 565
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	2 cut(s)	280, 884
SfuI	TTCGAA	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SpeI	ACTAGT	1 cut(s)	458
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	3 cut(s)	33, 392, 715
SseBI	AGGCCT	3 cut(s)	75, 637, 927
SsiI	CCGC	4 cut(s)	6, 121, 171, 316
SspMI	CTAG	1 cut(s)	459
StuI	AGGCCT	3 cut(s)	75, 637, 927
StyD4I	CCNGG	3 cut(s)	135, 258, 563
StyI	CCWWGG	2 cut(s)	9, 39
TaaI	ACNGT	3 cut(s)	208, 308, 341
TaqI	TCGA	4 cut(s)	177, 272, 516, 878
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	3 cut(s)	33, 392, 715
TfiI	GAWTC	3 cut(s)	300, 406, 862
TscAI	CASTG	2 cut(s)	65, 703
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	2 cut(s)	335, 740
TspRI	CASTG	2 cut(s)	65, 703
XagI	CCTNNNNNAGG	1 cut(s)	134
XceI	RCATGY	2 cut(s)	104, 503
XmiI	GTMKAC	1 cut(s)	903
XspI	CTAG	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.