Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08820 |
| fragaria_vesca | FvH4_6g10271 |
| malus_domestica | MD04G1168200.v1.1 MD09G1180100.v1.1 |
| prunus_persica | Prupe.6G286400_v2.0.a1 |
| pyrus_communis | pycom04g01680 pycom04g14920 |
| rosa_chinensis | RchiOBHm_Chr3g0461021 |
| rosa_laevigata | RLG00000024957 |
| rosa_multiflora | Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002 |
| rosa_rugosa | Rorug03G0047900 |
| rosa_samantha | Rh3AG105200 Rh3BG109200 Rh3DG110900 |
| rosa_wichuraiana | Rw3G009010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1419 |
| Acc36I | ACCTGC | 2 cut(s) | 603, 1775 |
| AccII | CGCG | 1 cut(s) | 808 |
| AciI | CCGC | 5 cut(s) | 121, 486, 675, 808, 1944 |
| AclWI | GGATC | 3 cut(s) | 335, 1389, 1682 |
| AcoI | YGGCCR | 2 cut(s) | 756, 1872 |
| AcsI | RAATTY | 5 cut(s) | 299, 931, 1037, 1236, 1700 |
| AfaI | GTAC | 4 cut(s) | 33, 569, 1063, 1521 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 111, 658, 960, 1058, 1092, 1603 |
| AflIII | ACRYGT | 2 cut(s) | 1077, 1189 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1624 |
| AhlI | ACTAGT | 2 cut(s) | 458, 1331 |
| AjnI | CCWGG | 2 cut(s) | 264, 993 |
| Alw21I | GWGCWC | 1 cut(s) | 1845 |
| Alw26I | GTCTC | 6 cut(s) | 44, 1134, 1298, 1707, 1892, 1984 |
| AlwI | GGATC | 3 cut(s) | 335, 1389, 1682 |
| AoxI | GGCC | 7 cut(s) | 127, 262, 635, 756, 1171, 1872, 1959 |
| ApeKI | GCWGC | 3 cut(s) | 1160, 1613, 1781 |
| ApoI | RAATTY | 5 cut(s) | 299, 931, 1037, 1236, 1700 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 266, 298 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1256 |
| AspLEI | GCGC | 2 cut(s) | 168, 808 |
| AsuC2I | CCSGG | 2 cut(s) | 1662, 2006 |
| AsuHPI | GGTGA | 3 cut(s) | 337, 433, 1958 |
| BaeGI | GKGCMC | 1 cut(s) | 189 |
| BalI | TGGCCA | 2 cut(s) | 758, 1874 |
| BanII | GRGCYC | 1 cut(s) | 994 |
| BbsI | GAAGAC | 1 cut(s) | 202 |
| Bbv12I | GWGCWC | 1 cut(s) | 1845 |
| BbvI | GCAGC | 3 cut(s) | 1147, 1625, 1793 |
| BccI | CCATC | 8 cut(s) | 563, 619, 790, 815, 1018, 1241, 1970, 2030 |
| BciT130I | CCWGG | 2 cut(s) | 266, 995 |
| BcnI | CCSGG | 2 cut(s) | 1662, 2006 |
| BcoDI | GTCTC | 6 cut(s) | 44, 1134, 1298, 1707, 1892, 1984 |
| BcuI | ACTAGT | 2 cut(s) | 458, 1331 |
| BfaI | CTAG | 7 cut(s) | 131, 375, 459, 1001, 1332, 1541, 1623 |
| BfuAI | ACCTGC | 2 cut(s) | 603, 1775 |
| BisI | GCNGC | 5 cut(s) | 487, 676, 1161, 1614, 1782 |
| BlsI | GCNGC | 5 cut(s) | 488, 677, 1162, 1615, 1783 |
| Bme1390I | CCNGG | 4 cut(s) | 266, 995, 1662, 2006 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1624 |
| BmiI | GGNNCC | 1 cut(s) | 991 |
| BmrFI | CCNGG | 4 cut(s) | 266, 995, 1662, 2006 |
| BmsI | GCATC | 4 cut(s) | 280, 884, 1361, 1472 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1305, 1334 |
| BpiI | GAAGAC | 1 cut(s) | 202 |
| BpmI | CTGGAG | 1 cut(s) | 641 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1767 |
| BpuEI | CTTGAG | 2 cut(s) | 80, 851 |
| BpuMI | CCSGG | 2 cut(s) | 1662, 2006 |
| BsaBI | GATNNNNATC | 2 cut(s) | 874, 2000 |
| BsaI | GGTCTC | 4 cut(s) | 44, 1134, 1298, 1892 |
| BsaJI | CCNNGG | 6 cut(s) | 124, 954, 993, 1547, 1660, 1849 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 8, 38 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 111, 658, 960, 1058, 1092, 1603 |
| Bse3DI | GCAATG | 3 cut(s) | 65, 1170, 1875 |
| Bse8I | GATNNNNATC | 2 cut(s) | 874, 2000 |
| BseBI | CCWGG | 2 cut(s) | 266, 995 |
| BseDI | CCNNGG | 6 cut(s) | 124, 954, 993, 1547, 1660, 1849 |
| BseGI | GGATG | 6 cut(s) | 1134, 1376, 1414, 1487, 1612, 1653 |
| BseJI | GATNNNNATC | 2 cut(s) | 874, 2000 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 111, 658, 960, 1058, 1092, 1603 |
| BseMI | GCAATG | 3 cut(s) | 65, 1170, 1875 |
| BseMII | CTCAG | 2 cut(s) | 717, 1569 |
| BseRI | GAGGAG | 2 cut(s) | 1844, 1847 |
| BseSI | GKGCMC | 1 cut(s) | 189 |
| BseXI | GCAGC | 3 cut(s) | 1147, 1625, 1793 |
| Bsh1236I | CGCG | 1 cut(s) | 808 |
| BshFI | GGCC | 7 cut(s) | 129, 264, 637, 758, 1173, 1874, 1961 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1845 |
| BsiSI | CCGG | 3 cut(s) | 171, 1662, 2005 |
| BslFI | GGGAC | 1 cut(s) | 1705 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 111, 658, 960, 1058, 1092, 1603 |
| BsmAI | GTCTC | 6 cut(s) | 44, 1134, 1298, 1707, 1892, 1984 |
| BsmFI | GGGAC | 1 cut(s) | 1705 |
| BsmI | GAATGC | 2 cut(s) | 831, 1162 |
| BsnI | GGCC | 7 cut(s) | 129, 264, 637, 758, 1173, 1874, 1961 |
| Bso31I | GGTCTC | 4 cut(s) | 44, 1134, 1298, 1892 |
| Bsp1286I | GDGCHC | 3 cut(s) | 189, 994, 1845 |
| Bsp143I | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| Bsp19I | CCATGG | 2 cut(s) | 954, 1547 |
| BspACI | CCGC | 5 cut(s) | 121, 486, 675, 808, 1944 |
| BspANI | GGCC | 7 cut(s) | 129, 264, 637, 758, 1173, 1874, 1961 |
| BspCNI | CTCAG | 2 cut(s) | 718, 1568 |
| BspFNI | CGCG | 1 cut(s) | 808 |
| BspLI | GGNNCC | 1 cut(s) | 991 |
| BspMI | ACCTGC | 2 cut(s) | 603, 1775 |
| BspPI | GGATC | 3 cut(s) | 335, 1389, 1682 |
| BspTNI | GGTCTC | 4 cut(s) | 44, 1134, 1298, 1892 |
| BsrDI | GCAATG | 3 cut(s) | 65, 1170, 1875 |
| BssECI | CCNNGG | 6 cut(s) | 124, 954, 993, 1547, 1660, 1849 |
| BssMI | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| BssT1I | CCWWGG | 4 cut(s) | 124, 954, 1547, 1849 |
| Bst2UI | CCWGG | 2 cut(s) | 266, 995 |
| Bst4CI | ACNGT | 3 cut(s) | 7, 1201, 1862 |
| Bst6I | CTCTTC | 3 cut(s) | 914, 1217, 1821 |
| BstC8I | GCNNGC | 9 cut(s) | 102, 189, 193, 673, 1015, 1399, 1487, 1594, 1872 |
| BstDEI | CTNAG | 6 cut(s) | 480, 726, 766, 1388, 1555, 1767 |
| BstDSI | CCRYGG | 2 cut(s) | 954, 1547 |
| BstF5I | GGATG | 6 cut(s) | 1134, 1376, 1414, 1487, 1612, 1653 |
| BstFNI | CGCG | 1 cut(s) | 808 |
| BstHHI | GCGC | 2 cut(s) | 168, 808 |
| BstKTI | GATC | 4 cut(s) | 330, 1384, 1677, 1998 |
| BstMAI | GTCTC | 6 cut(s) | 44, 1134, 1298, 1707, 1892, 1984 |
| BstMBI | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 97, 201, 1495, 1950 |
| BstNI | CCWGG | 2 cut(s) | 266, 995 |
| BstNSI | RCATGY | 4 cut(s) | 104, 503, 1081, 1193 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1305, 1334 |
| BstSCI | CCNGG | 4 cut(s) | 264, 993, 1660, 2004 |
| BstSLI | GKGCMC | 1 cut(s) | 189 |
| BstUI | CGCG | 1 cut(s) | 808 |
| BstV1I | GCAGC | 3 cut(s) | 1147, 1625, 1793 |
| BstV2I | GAAGAC | 1 cut(s) | 202 |
| BstX2I | RGATCY | 2 cut(s) | 327, 1381 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 46 |
| BstYI | RGATCY | 2 cut(s) | 327, 1381 |
| BsuRI | GGCC | 7 cut(s) | 129, 264, 637, 758, 1173, 1874, 1961 |
| BtgI | CCRYGG | 2 cut(s) | 954, 1547 |
| BtsCI | GGATG | 6 cut(s) | 1134, 1376, 1414, 1487, 1612, 1653 |
| BtsI | GCAGTG | 2 cut(s) | 703, 1896 |
| BtsIMutI | CAGTG | 3 cut(s) | 703, 1867, 1896 |
| BveI | ACCTGC | 2 cut(s) | 603, 1775 |
| Cac8I | GCNNGC | 9 cut(s) | 102, 189, 193, 673, 1015, 1399, 1487, 1594, 1872 |
| CfoI | GCGC | 2 cut(s) | 168, 808 |
| Csp6I | GTAC | 4 cut(s) | 32, 568, 1062, 1520 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1789, 1824 |
| CviQI | GTAC | 4 cut(s) | 32, 568, 1062, 1520 |
| DdeI | CTNAG | 6 cut(s) | 480, 726, 766, 1388, 1555, 1767 |
| DpnI | GATC | 4 cut(s) | 329, 1383, 1676, 1997 |
| DpnII | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| DraI | TTTAAA | 1 cut(s) | 1123 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1624 |
| EaeI | YGGCCR | 2 cut(s) | 756, 1872 |
| Eam1104I | CTCTTC | 3 cut(s) | 914, 1217, 1821 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1624 |
| EarI | CTCTTC | 3 cut(s) | 914, 1217, 1821 |
| EciI | GGCGGA | 1 cut(s) | 110 |
| Eco130I | CCWWGG | 4 cut(s) | 124, 954, 1547, 1849 |
| Eco147I | AGGCCT | 1 cut(s) | 637 |
| Eco24I | GRGCYC | 1 cut(s) | 994 |
| Eco31I | GGTCTC | 4 cut(s) | 44, 1134, 1298, 1892 |
| EcoRI | GAATTC | 3 cut(s) | 299, 1236, 1700 |
| EcoRII | CCWGG | 2 cut(s) | 264, 993 |
| EcoT14I | CCWWGG | 4 cut(s) | 124, 954, 1547, 1849 |
| EcoT22I | ATGCAT | 3 cut(s) | 877, 1376, 1729 |
| EcoT38I | GRGCYC | 1 cut(s) | 994 |
| ErhI | CCWWGG | 4 cut(s) | 124, 954, 1547, 1849 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1689, 1721, 1829, 1861 |
| FaqI | GGGAC | 1 cut(s) | 1705 |
| FauI | CCCGC | 1 cut(s) | 801 |
| Fnu4HI | GCNGC | 5 cut(s) | 487, 676, 1161, 1614, 1782 |
| FokI | GGATG | 6 cut(s) | 1141, 1383, 1421, 1494, 1619, 1660 |
| FriOI | GRGCYC | 1 cut(s) | 994 |
| Fsp4HI | GCNGC | 5 cut(s) | 487, 676, 1161, 1614, 1782 |
| FspBI | CTAG | 7 cut(s) | 131, 375, 459, 1001, 1332, 1541, 1623 |
| GlaI | GCGC | 2 cut(s) | 167, 807 |
| GluI | GCNGC | 5 cut(s) | 487, 676, 1161, 1614, 1782 |
| GsuI | CTGGAG | 1 cut(s) | 641 |
| HaeIII | GGCC | 7 cut(s) | 129, 264, 637, 758, 1173, 1874, 1961 |
| HapII | CCGG | 3 cut(s) | 171, 1662, 2005 |
| HhaI | GCGC | 2 cut(s) | 168, 808 |
| Hin6I | GCGC | 2 cut(s) | 166, 806 |
| HinP1I | GCGC | 2 cut(s) | 166, 806 |
| HincII | GTYRAC | 1 cut(s) | 1300 |
| HindII | GTYRAC | 1 cut(s) | 1300 |
| HindIII | AAGCTT | 4 cut(s) | 42, 366, 1107, 1413 |
| HinfI | GANTC | 4 cut(s) | 256, 862, 1102, 1209 |
| HpaII | CCGG | 3 cut(s) | 171, 1662, 2005 |
| HphI | GGTGA | 3 cut(s) | 337, 433, 1958 |
| Hpy166II | GTNNAC | 3 cut(s) | 791, 1048, 1300 |
| Hpy188I | TCNGA | 6 cut(s) | 274, 385, 1071, 1217, 1712, 1735 |
| Hpy188III | TCNNGA | 3 cut(s) | 527, 1629, 1697 |
| Hpy8I | GTNNAC | 3 cut(s) | 791, 1048, 1300 |
| Hpy99I | CGWCG | 3 cut(s) | 278, 290, 1760 |
| HpyAV | CCTTC | 8 cut(s) | 74, 94, 358, 829, 919, 1438, 1831, 1943 |
| HpyCH4III | ACNGT | 3 cut(s) | 7, 1201, 1862 |
| HpyCH4IV | ACGT | 1 cut(s) | 605 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 97, 201, 1495, 1950 |
| HpyF3I | CTNAG | 6 cut(s) | 480, 726, 766, 1388, 1555, 1767 |
| HpySE526I | ACGT | 1 cut(s) | 605 |
| HspAI | GCGC | 2 cut(s) | 166, 806 |
| Kzo9I | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| LmnI | GCTCC | 6 cut(s) | 173, 575, 989, 1466, 1840, 1906 |
| Lsp1109I | GCAGC | 3 cut(s) | 1147, 1625, 1793 |
| LweI | GCATC | 4 cut(s) | 280, 884, 1361, 1472 |
| MaeI | CTAG | 7 cut(s) | 131, 375, 459, 1001, 1332, 1541, 1623 |
| MaeII | ACGT | 1 cut(s) | 605 |
| MaeIII | GTNAC | 1 cut(s) | 1856 |
| MalI | GATC | 4 cut(s) | 329, 1383, 1676, 1997 |
| MboI | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| MfeI | CAATTG | 2 cut(s) | 1356, 1505 |
| MflI | RGATCY | 2 cut(s) | 327, 1381 |
| MhlI | GDGCHC | 3 cut(s) | 189, 994, 1845 |
| MlsI | TGGCCA | 2 cut(s) | 758, 1874 |
| MluNI | TGGCCA | 2 cut(s) | 758, 1874 |
| MlyI | GAGTC | 1 cut(s) | 1203 |
| MmeI | TCCRAC | 5 cut(s) | 297, 1386, 1652, 1690, 1820 |
| Mox20I | TGGCCA | 2 cut(s) | 758, 1874 |
| Mph1103I | ATGCAT | 3 cut(s) | 877, 1376, 1729 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1256 |
| MscI | TGGCCA | 2 cut(s) | 758, 1874 |
| MseI | TTAA | 3 cut(s) | 453, 692, 1122 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1259 |
| Msp20I | TGGCCA | 2 cut(s) | 758, 1874 |
| MspI | CCGG | 3 cut(s) | 171, 1662, 2005 |
| MspR9I | CCNGG | 4 cut(s) | 266, 995, 1662, 2006 |
| MunI | CAATTG | 2 cut(s) | 1356, 1505 |
| Mva1269I | GAATGC | 2 cut(s) | 831, 1162 |
| MvaI | CCWGG | 2 cut(s) | 266, 995 |
| MvnI | CGCG | 1 cut(s) | 808 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 97, 201, 1495, 1950 |
| NciI | CCSGG | 2 cut(s) | 1662, 2006 |
| NcoI | CCATGG | 2 cut(s) | 954, 1547 |
| NdeII | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| NlaIV | GGNNCC | 1 cut(s) | 991 |
| NmeAIII | GCCGAG | 1 cut(s) | 91 |
| NmuCI | GTSAC | 1 cut(s) | 1856 |
| NsiI | ATGCAT | 3 cut(s) | 877, 1376, 1729 |
| NspI | RCATGY | 4 cut(s) | 104, 503, 1081, 1193 |
| PaeI | GCATGC | 1 cut(s) | 104 |
| PceI | AGGCCT | 1 cut(s) | 637 |
| PciI | ACATGT | 2 cut(s) | 1077, 1189 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 282, 294, 1752 |
| PctI | GAATGC | 2 cut(s) | 831, 1162 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1256 |
| PfeI | GAWTC | 3 cut(s) | 256, 862, 1102 |
| PfoI | TCCNGGA | 1 cut(s) | 2004 |
| PkrI | GCNGC | 5 cut(s) | 488, 677, 1162, 1615, 1783 |
| PleI | GAGTC | 1 cut(s) | 1203 |
| PpsI | GAGTC | 1 cut(s) | 1203 |
| PscI | ACATGT | 2 cut(s) | 1077, 1189 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1305, 1334 |
| PsiI | TTATAA | 1 cut(s) | 1419 |
| Psp6I | CCWGG | 2 cut(s) | 264, 993 |
| PspGI | CCWGG | 2 cut(s) | 264, 993 |
| PspN4I | GGNNCC | 1 cut(s) | 991 |
| PsuI | RGATCY | 2 cut(s) | 327, 1381 |
| RsaI | GTAC | 4 cut(s) | 33, 569, 1063, 1521 |
| RsaNI | GTAC | 4 cut(s) | 32, 568, 1062, 1520 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1259 |
| SaqAI | TTAA | 3 cut(s) | 453, 692, 1122 |
| SatI | GCNGC | 5 cut(s) | 487, 676, 1161, 1614, 1782 |
| Sau3AI | GATC | 4 cut(s) | 327, 1381, 1674, 1995 |
| SchI | GAGTC | 1 cut(s) | 1203 |
| ScrFI | CCNGG | 4 cut(s) | 266, 995, 1662, 2006 |
| SduI | GDGCHC | 3 cut(s) | 189, 994, 1845 |
| SfaNI | GCATC | 4 cut(s) | 280, 884, 1361, 1472 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1259 |
| SmlI | CTYRAG | 2 cut(s) | 95, 830 |
| SmoI | CTYRAG | 2 cut(s) | 95, 830 |
| SpeI | ACTAGT | 2 cut(s) | 458, 1331 |
| SphI | GCATGC | 1 cut(s) | 104 |
| SseBI | AGGCCT | 1 cut(s) | 637 |
| SsiI | CCGC | 5 cut(s) | 121, 486, 675, 808, 1944 |
| SspI | AATATT | 1 cut(s) | 1582 |
| SspMI | CTAG | 7 cut(s) | 131, 375, 459, 1001, 1332, 1541, 1623 |
| StuI | AGGCCT | 1 cut(s) | 637 |
| StyD4I | CCNGG | 4 cut(s) | 264, 993, 1660, 2004 |
| StyI | CCWWGG | 4 cut(s) | 124, 954, 1547, 1849 |
| TaaI | ACNGT | 3 cut(s) | 7, 1201, 1862 |
| TaiI | ACGT | 1 cut(s) | 608 |
| TatI | WGTACW | 1 cut(s) | 31 |
| TauI | GCSGC | 2 cut(s) | 489, 678 |
| TfiI | GAWTC | 3 cut(s) | 256, 862, 1102 |
| Tru1I | TTAA | 3 cut(s) | 453, 692, 1122 |
| Tru9I | TTAA | 3 cut(s) | 453, 692, 1122 |
| TscAI | CASTG | 3 cut(s) | 703, 1867, 1903 |
| TseFI | GTSAC | 1 cut(s) | 1856 |
| TseI | GCWGC | 3 cut(s) | 1160, 1613, 1781 |
| Tsp45I | GTSAC | 1 cut(s) | 1856 |
| TspRI | CASTG | 3 cut(s) | 703, 1867, 1903 |
| XapI | RAATTY | 5 cut(s) | 299, 931, 1037, 1236, 1700 |
| XceI | RCATGY | 4 cut(s) | 104, 503, 1081, 1193 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1256 |
| XspI | CTAG | 7 cut(s) | 131, 375, 459, 1001, 1332, 1541, 1623 |
| Zsp2I | ATGCAT | 3 cut(s) | 877, 1376, 1729 |