Prupe.6G286400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
26524309 .. 26526383
2075 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G286400.1

Sequence Viewer

Length: 2067 bp
ATGACAGTCTTGCCCAACAGAGCCTCCCCTGTACTTTCCAAAGCTTTGGAGACCAAGCAATGCCTTCTTCAAGGTTTCAACTCCTTCAAGCACCTCAAGCATGCCCACGCTCGGCTTCTCCGCCTTGGCCTAGACCAAGACAACTATCTTCTCAACATGGTCTTGCGCTCCGGCTTCGATTTTGGGCACGCCAGCTACTCTCGCCTCGTCTTCGACCAAACTACGCAACCCAATATATTTCTTTGGAATACCATGATTCGTGGCCTGGTTTCCGACGATTGCTTCGACGATGCTATCGAATTCTTTATTTCTATGCGAACAGAGGGGATCTTGCCCAATAGCTTCACCTTCCCTTTTGTTTTGAAAGCTTGTGCTAGGCGTTCGGATTTTCCATTGGGTTTGAACATTCATACCCTTGTGGTGAAAACGGGGTTCAATTTTGATGTTTATGTTAAAACTAGTTTGCTGTGCTTGTATGCTAAGTGCGGCTATTTGGAACATGCCCATAAGGTTTTCGATGATATTCCCGACAAGAATGTGGTTTCTTGGACTGCCATCATTTGTGGGTACATTGGAGCTGGTCAATATAGAGAAGCTATTGATACGTTTCGCAGGTTGCTGGAGATGGGTTTGAGGCCTGATAGTTTTAGCCTTGTTCGGGTTTTATCTGCGTGCGGCAAGTTAGGGGATTTAAGCAGTGGGGAGTGGATAGATAGATACATAACTGAGATTGGCATGGGAAAGAATGTGTTTGTGGCCACCTCCTTAGTTGATTTGTATGCCAAGTGTGGACAGATGGAAAAGGCGCGGGGTATCTTCGATGGAATGCTTGAGAAGGATATAGTATCTTGGAGTAGTATGATTCAGGGATATGCATCAAATGGACTTCCAAAAGAAGCCATAGACCTCTTCTTTCAAATGCAGAAGGAAAATTTGAAACCTGATTGTTATGCCATGGTTGGGGTGCTTTCTGCTTGTGCAAGATTAGGAGCCCTGGAACTAGGGGAGTGGGCTGGCAGTTTGATGGATAAACATGAATTTTTTGTGAACCCTGTTCTTGGTACAGCTCTGATTGACATGTATGCCAAATGTGGGTGCATGATTCAAGCTTGGGAAGTCTTTAAAGGGATGAAAAAAAGAGACCATGTGGTTTGGAATGCTGCAATGTCTGGCCTTGCCATGAATGGACATGTCAAAACTGTGTTTGGACTCTTCGGACAAGTTGAGAAAAATGGAATTCGACCTGATGGGAACACATTCATGGGGTTGCTTTGTGGGTGTTCTCATGCTGGTCTCGTTGACGAGGGTCGTAGGTATTTCAATAACATGACTAGTGTCTTTTCTTTGGCTCATACAATTGAGCATTATGGATGCATGGTGGATCTTCTTAGTCGTGCTGGCTTGTTGGATGAAGCTTATAACCTAATCAAAACTATGCCGATGAAGGCTAATTCAGTCGTTTGGGGAGCGTTGTTGGGTGGATGCAGGCTACATCGGCAAACCCAATTGGCTGAACTCGTACTGAAACAACTCATTGAGCTAGAACCATGGAACTCAGCACACTATGTTCTCCTGTCAAATATTTACTCTGCAAGCCATAAATGGGATGAGGCAGCAGACACTAGGTCAAGAATGAATGAGCAAGGGATGAAGAAAATCCCCGGTTGTAGTTGGATCGAAGTAAATGGGGTTGTTCAAGAATTCCTTGTCGGAGACAAGTCCCATGCATTGTCAGAGAAGATATACGCAAAGCTCGACGAGTTGGCTAAGGAATTGAAAGCAGCAGGTTATGTTCCAACCACAGACTTTGTGTTGTTTGACATAGAAGAGGAGGAGAAGGAGCACTTCCTTGGTTGTCACAGTGAGAAGCTGGCCATTGCATTTGGTCTCATAAGCACTGCTCCTAAAGATACAATTCGAGTTGTGAAGAACCTTCGTGTATGCGGTGATTGCCATGAGGCCATCAAGCTCATCTCAAAGATTACAGAGAGACAGATCATTATCCGGGATAACAACCGATTTCATTGTTTCATTGATGGTTCTTGTTCATGTAAAGATTATTGGTGA

Protein Analysis

689

Amino Acids

77.19

Weight (kDa)

6.6

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014523)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1419
Acc36I ACCTGC 2 cut(s) 603, 1775
AccII CGCG 1 cut(s) 808
AciI CCGC 5 cut(s) 121, 486, 675, 808, 1944
AclWI GGATC 3 cut(s) 335, 1389, 1682
AcoI YGGCCR 2 cut(s) 756, 1872
AcsI RAATTY 5 cut(s) 299, 931, 1037, 1236, 1700
AfaI GTAC 4 cut(s) 33, 569, 1063, 1521
AfiI CCNNNNNNNGG 6 cut(s) 111, 658, 960, 1058, 1092, 1603
AflIII ACRYGT 2 cut(s) 1077, 1189
AhdI GACNNNNNGTC 1 cut(s) 1624
AhlI ACTAGT 2 cut(s) 458, 1331
AjnI CCWGG 2 cut(s) 264, 993
Alw21I GWGCWC 1 cut(s) 1845
Alw26I GTCTC 6 cut(s) 44, 1134, 1298, 1707, 1892, 1984
AlwI GGATC 3 cut(s) 335, 1389, 1682
AoxI GGCC 7 cut(s) 127, 262, 635, 756, 1171, 1872, 1959
ApeKI GCWGC 3 cut(s) 1160, 1613, 1781
ApoI RAATTY 5 cut(s) 299, 931, 1037, 1236, 1700
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
Asp700I GAANNNNTTC 1 cut(s) 1256
AspLEI GCGC 2 cut(s) 168, 808
AsuC2I CCSGG 2 cut(s) 1662, 2006
AsuHPI GGTGA 3 cut(s) 337, 433, 1958
BaeGI GKGCMC 1 cut(s) 189
BalI TGGCCA 2 cut(s) 758, 1874
BanII GRGCYC 1 cut(s) 994
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 1845
BbvI GCAGC 3 cut(s) 1147, 1625, 1793
BccI CCATC 8 cut(s) 563, 619, 790, 815, 1018, 1241, 1970, 2030
BciT130I CCWGG 2 cut(s) 266, 995
BcnI CCSGG 2 cut(s) 1662, 2006
BcoDI GTCTC 6 cut(s) 44, 1134, 1298, 1707, 1892, 1984
BcuI ACTAGT 2 cut(s) 458, 1331
BfaI CTAG 7 cut(s) 131, 375, 459, 1001, 1332, 1541, 1623
BfuAI ACCTGC 2 cut(s) 603, 1775
BisI GCNGC 5 cut(s) 487, 676, 1161, 1614, 1782
BlsI GCNGC 5 cut(s) 488, 677, 1162, 1615, 1783
Bme1390I CCNGG 4 cut(s) 266, 995, 1662, 2006
BmeRI GACNNNNNGTC 1 cut(s) 1624
BmiI GGNNCC 1 cut(s) 991
BmrFI CCNGG 4 cut(s) 266, 995, 1662, 2006
BmsI GCATC 4 cut(s) 280, 884, 1361, 1472
BoxI GACNNNNGTC 2 cut(s) 1305, 1334
BpiI GAAGAC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 1767
BpuEI CTTGAG 2 cut(s) 80, 851
BpuMI CCSGG 2 cut(s) 1662, 2006
BsaBI GATNNNNATC 2 cut(s) 874, 2000
BsaI GGTCTC 4 cut(s) 44, 1134, 1298, 1892
BsaJI CCNNGG 6 cut(s) 124, 954, 993, 1547, 1660, 1849
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bsc4I CCNNNNNNNGG 6 cut(s) 111, 658, 960, 1058, 1092, 1603
Bse3DI GCAATG 3 cut(s) 65, 1170, 1875
Bse8I GATNNNNATC 2 cut(s) 874, 2000
BseBI CCWGG 2 cut(s) 266, 995
BseDI CCNNGG 6 cut(s) 124, 954, 993, 1547, 1660, 1849
BseGI GGATG 6 cut(s) 1134, 1376, 1414, 1487, 1612, 1653
BseJI GATNNNNATC 2 cut(s) 874, 2000
BseLI CCNNNNNNNGG 6 cut(s) 111, 658, 960, 1058, 1092, 1603
BseMI GCAATG 3 cut(s) 65, 1170, 1875
BseMII CTCAG 2 cut(s) 717, 1569
BseRI GAGGAG 2 cut(s) 1844, 1847
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 3 cut(s) 1147, 1625, 1793
Bsh1236I CGCG 1 cut(s) 808
BshFI GGCC 7 cut(s) 129, 264, 637, 758, 1173, 1874, 1961
BsiHKAI GWGCWC 1 cut(s) 1845
BsiSI CCGG 3 cut(s) 171, 1662, 2005
BslFI GGGAC 1 cut(s) 1705
BslI CCNNNNNNNGG 6 cut(s) 111, 658, 960, 1058, 1092, 1603
BsmAI GTCTC 6 cut(s) 44, 1134, 1298, 1707, 1892, 1984
BsmFI GGGAC 1 cut(s) 1705
BsmI GAATGC 2 cut(s) 831, 1162
BsnI GGCC 7 cut(s) 129, 264, 637, 758, 1173, 1874, 1961
Bso31I GGTCTC 4 cut(s) 44, 1134, 1298, 1892
Bsp1286I GDGCHC 3 cut(s) 189, 994, 1845
Bsp143I GATC 4 cut(s) 327, 1381, 1674, 1995
Bsp19I CCATGG 2 cut(s) 954, 1547
BspACI CCGC 5 cut(s) 121, 486, 675, 808, 1944
BspANI GGCC 7 cut(s) 129, 264, 637, 758, 1173, 1874, 1961
BspCNI CTCAG 2 cut(s) 718, 1568
BspFNI CGCG 1 cut(s) 808
BspLI GGNNCC 1 cut(s) 991
BspMI ACCTGC 2 cut(s) 603, 1775
BspPI GGATC 3 cut(s) 335, 1389, 1682
BspTNI GGTCTC 4 cut(s) 44, 1134, 1298, 1892
BsrDI GCAATG 3 cut(s) 65, 1170, 1875
BssECI CCNNGG 6 cut(s) 124, 954, 993, 1547, 1660, 1849
BssMI GATC 4 cut(s) 327, 1381, 1674, 1995
BssT1I CCWWGG 4 cut(s) 124, 954, 1547, 1849
Bst2UI CCWGG 2 cut(s) 266, 995
Bst4CI ACNGT 3 cut(s) 7, 1201, 1862
Bst6I CTCTTC 3 cut(s) 914, 1217, 1821
BstC8I GCNNGC 9 cut(s) 102, 189, 193, 673, 1015, 1399, 1487, 1594, 1872
BstDEI CTNAG 6 cut(s) 480, 726, 766, 1388, 1555, 1767
BstDSI CCRYGG 2 cut(s) 954, 1547
BstF5I GGATG 6 cut(s) 1134, 1376, 1414, 1487, 1612, 1653
BstFNI CGCG 1 cut(s) 808
BstHHI GCGC 2 cut(s) 168, 808
BstKTI GATC 4 cut(s) 330, 1384, 1677, 1998
BstMAI GTCTC 6 cut(s) 44, 1134, 1298, 1707, 1892, 1984
BstMBI GATC 4 cut(s) 327, 1381, 1674, 1995
BstMWI GCNNNNNNNGC 4 cut(s) 97, 201, 1495, 1950
BstNI CCWGG 2 cut(s) 266, 995
BstNSI RCATGY 4 cut(s) 104, 503, 1081, 1193
BstPAI GACNNNNGTC 2 cut(s) 1305, 1334
BstSCI CCNGG 4 cut(s) 264, 993, 1660, 2004
BstSLI GKGCMC 1 cut(s) 189
BstUI CGCG 1 cut(s) 808
BstV1I GCAGC 3 cut(s) 1147, 1625, 1793
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 2 cut(s) 327, 1381
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 2 cut(s) 327, 1381
BsuRI GGCC 7 cut(s) 129, 264, 637, 758, 1173, 1874, 1961
BtgI CCRYGG 2 cut(s) 954, 1547
BtsCI GGATG 6 cut(s) 1134, 1376, 1414, 1487, 1612, 1653
BtsI GCAGTG 2 cut(s) 703, 1896
BtsIMutI CAGTG 3 cut(s) 703, 1867, 1896
BveI ACCTGC 2 cut(s) 603, 1775
Cac8I GCNNGC 9 cut(s) 102, 189, 193, 673, 1015, 1399, 1487, 1594, 1872
CfoI GCGC 2 cut(s) 168, 808
Csp6I GTAC 4 cut(s) 32, 568, 1062, 1520
CspCI CAANNNNNGTGG 2 cut(s) 1789, 1824
CviQI GTAC 4 cut(s) 32, 568, 1062, 1520
DdeI CTNAG 6 cut(s) 480, 726, 766, 1388, 1555, 1767
DpnI GATC 4 cut(s) 329, 1383, 1676, 1997
DpnII GATC 4 cut(s) 327, 1381, 1674, 1995
DraI TTTAAA 1 cut(s) 1123
DriI GACNNNNNGTC 1 cut(s) 1624
EaeI YGGCCR 2 cut(s) 756, 1872
Eam1104I CTCTTC 3 cut(s) 914, 1217, 1821
Eam1105I GACNNNNNGTC 1 cut(s) 1624
EarI CTCTTC 3 cut(s) 914, 1217, 1821
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 4 cut(s) 124, 954, 1547, 1849
Eco147I AGGCCT 1 cut(s) 637
Eco24I GRGCYC 1 cut(s) 994
Eco31I GGTCTC 4 cut(s) 44, 1134, 1298, 1892
EcoRI GAATTC 3 cut(s) 299, 1236, 1700
EcoRII CCWGG 2 cut(s) 264, 993
EcoT14I CCWWGG 4 cut(s) 124, 954, 1547, 1849
EcoT22I ATGCAT 3 cut(s) 877, 1376, 1729
EcoT38I GRGCYC 1 cut(s) 994
ErhI CCWWGG 4 cut(s) 124, 954, 1547, 1849
FalI AAGNNNNNCTT 4 cut(s) 1689, 1721, 1829, 1861
FaqI GGGAC 1 cut(s) 1705
FauI CCCGC 1 cut(s) 801
Fnu4HI GCNGC 5 cut(s) 487, 676, 1161, 1614, 1782
FokI GGATG 6 cut(s) 1141, 1383, 1421, 1494, 1619, 1660
FriOI GRGCYC 1 cut(s) 994
Fsp4HI GCNGC 5 cut(s) 487, 676, 1161, 1614, 1782
FspBI CTAG 7 cut(s) 131, 375, 459, 1001, 1332, 1541, 1623
GlaI GCGC 2 cut(s) 167, 807
GluI GCNGC 5 cut(s) 487, 676, 1161, 1614, 1782
GsuI CTGGAG 1 cut(s) 641
HaeIII GGCC 7 cut(s) 129, 264, 637, 758, 1173, 1874, 1961
HapII CCGG 3 cut(s) 171, 1662, 2005
HhaI GCGC 2 cut(s) 168, 808
Hin6I GCGC 2 cut(s) 166, 806
HinP1I GCGC 2 cut(s) 166, 806
HincII GTYRAC 1 cut(s) 1300
HindII GTYRAC 1 cut(s) 1300
HindIII AAGCTT 4 cut(s) 42, 366, 1107, 1413
HinfI GANTC 4 cut(s) 256, 862, 1102, 1209
HpaII CCGG 3 cut(s) 171, 1662, 2005
HphI GGTGA 3 cut(s) 337, 433, 1958
Hpy166II GTNNAC 3 cut(s) 791, 1048, 1300
Hpy188I TCNGA 6 cut(s) 274, 385, 1071, 1217, 1712, 1735
Hpy188III TCNNGA 3 cut(s) 527, 1629, 1697
Hpy8I GTNNAC 3 cut(s) 791, 1048, 1300
Hpy99I CGWCG 3 cut(s) 278, 290, 1760
HpyAV CCTTC 8 cut(s) 74, 94, 358, 829, 919, 1438, 1831, 1943
HpyCH4III ACNGT 3 cut(s) 7, 1201, 1862
HpyCH4IV ACGT 1 cut(s) 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 201, 1495, 1950
HpyF3I CTNAG 6 cut(s) 480, 726, 766, 1388, 1555, 1767
HpySE526I ACGT 1 cut(s) 605
HspAI GCGC 2 cut(s) 166, 806
Kzo9I GATC 4 cut(s) 327, 1381, 1674, 1995
LmnI GCTCC 6 cut(s) 173, 575, 989, 1466, 1840, 1906
Lsp1109I GCAGC 3 cut(s) 1147, 1625, 1793
LweI GCATC 4 cut(s) 280, 884, 1361, 1472
MaeI CTAG 7 cut(s) 131, 375, 459, 1001, 1332, 1541, 1623
MaeII ACGT 1 cut(s) 605
MaeIII GTNAC 1 cut(s) 1856
MalI GATC 4 cut(s) 329, 1383, 1676, 1997
MboI GATC 4 cut(s) 327, 1381, 1674, 1995
MfeI CAATTG 2 cut(s) 1356, 1505
MflI RGATCY 2 cut(s) 327, 1381
MhlI GDGCHC 3 cut(s) 189, 994, 1845
MlsI TGGCCA 2 cut(s) 758, 1874
MluNI TGGCCA 2 cut(s) 758, 1874
MlyI GAGTC 1 cut(s) 1203
MmeI TCCRAC 5 cut(s) 297, 1386, 1652, 1690, 1820
Mox20I TGGCCA 2 cut(s) 758, 1874
Mph1103I ATGCAT 3 cut(s) 877, 1376, 1729
MroXI GAANNNNTTC 1 cut(s) 1256
MscI TGGCCA 2 cut(s) 758, 1874
MseI TTAA 3 cut(s) 453, 692, 1122
MslI CAYNNNNRTG 1 cut(s) 1259
Msp20I TGGCCA 2 cut(s) 758, 1874
MspI CCGG 3 cut(s) 171, 1662, 2005
MspR9I CCNGG 4 cut(s) 266, 995, 1662, 2006
MunI CAATTG 2 cut(s) 1356, 1505
Mva1269I GAATGC 2 cut(s) 831, 1162
MvaI CCWGG 2 cut(s) 266, 995
MvnI CGCG 1 cut(s) 808
MwoI GCNNNNNNNGC 4 cut(s) 97, 201, 1495, 1950
NciI CCSGG 2 cut(s) 1662, 2006
NcoI CCATGG 2 cut(s) 954, 1547
NdeII GATC 4 cut(s) 327, 1381, 1674, 1995
NlaIV GGNNCC 1 cut(s) 991
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 1856
NsiI ATGCAT 3 cut(s) 877, 1376, 1729
NspI RCATGY 4 cut(s) 104, 503, 1081, 1193
PaeI GCATGC 1 cut(s) 104
PceI AGGCCT 1 cut(s) 637
PciI ACATGT 2 cut(s) 1077, 1189
PcsI WCGNNNNNNNCGW 3 cut(s) 282, 294, 1752
PctI GAATGC 2 cut(s) 831, 1162
PdmI GAANNNNTTC 1 cut(s) 1256
PfeI GAWTC 3 cut(s) 256, 862, 1102
PfoI TCCNGGA 1 cut(s) 2004
PkrI GCNGC 5 cut(s) 488, 677, 1162, 1615, 1783
PleI GAGTC 1 cut(s) 1203
PpsI GAGTC 1 cut(s) 1203
PscI ACATGT 2 cut(s) 1077, 1189
PshAI GACNNNNGTC 2 cut(s) 1305, 1334
PsiI TTATAA 1 cut(s) 1419
Psp6I CCWGG 2 cut(s) 264, 993
PspGI CCWGG 2 cut(s) 264, 993
PspN4I GGNNCC 1 cut(s) 991
PsuI RGATCY 2 cut(s) 327, 1381
RsaI GTAC 4 cut(s) 33, 569, 1063, 1521
RsaNI GTAC 4 cut(s) 32, 568, 1062, 1520
RseI CAYNNNNRTG 1 cut(s) 1259
SaqAI TTAA 3 cut(s) 453, 692, 1122
SatI GCNGC 5 cut(s) 487, 676, 1161, 1614, 1782
Sau3AI GATC 4 cut(s) 327, 1381, 1674, 1995
SchI GAGTC 1 cut(s) 1203
ScrFI CCNGG 4 cut(s) 266, 995, 1662, 2006
SduI GDGCHC 3 cut(s) 189, 994, 1845
SfaNI GCATC 4 cut(s) 280, 884, 1361, 1472
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 2 cut(s) 95, 830
SmoI CTYRAG 2 cut(s) 95, 830
SpeI ACTAGT 2 cut(s) 458, 1331
SphI GCATGC 1 cut(s) 104
SseBI AGGCCT 1 cut(s) 637
SsiI CCGC 5 cut(s) 121, 486, 675, 808, 1944
SspI AATATT 1 cut(s) 1582
SspMI CTAG 7 cut(s) 131, 375, 459, 1001, 1332, 1541, 1623
StuI AGGCCT 1 cut(s) 637
StyD4I CCNGG 4 cut(s) 264, 993, 1660, 2004
StyI CCWWGG 4 cut(s) 124, 954, 1547, 1849
TaaI ACNGT 3 cut(s) 7, 1201, 1862
TaiI ACGT 1 cut(s) 608
TatI WGTACW 1 cut(s) 31
TauI GCSGC 2 cut(s) 489, 678
TfiI GAWTC 3 cut(s) 256, 862, 1102
Tru1I TTAA 3 cut(s) 453, 692, 1122
Tru9I TTAA 3 cut(s) 453, 692, 1122
TscAI CASTG 3 cut(s) 703, 1867, 1903
TseFI GTSAC 1 cut(s) 1856
TseI GCWGC 3 cut(s) 1160, 1613, 1781
Tsp45I GTSAC 1 cut(s) 1856
TspRI CASTG 3 cut(s) 703, 1867, 1903
XapI RAATTY 5 cut(s) 299, 931, 1037, 1236, 1700
XceI RCATGY 4 cut(s) 104, 503, 1081, 1193
XmnI GAANNNNTTC 1 cut(s) 1256
XspI CTAG 7 cut(s) 131, 375, 459, 1001, 1332, 1541, 1623
Zsp2I ATGCAT 3 cut(s) 877, 1376, 1729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.