Rorug03G0047900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014523
Physical Location & Seq
Reverse (-)
3732725 .. 3737163
4439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0047900.1

Sequence Viewer

Length: 1437 bp
ATGCAGATCCGACCCGAAAGAAACAAAAATAAAAGAAGCTCCGCTTCAAACAAAACGAAGAAAAGGATCTGCAGCACTGGCTCTCTCTCTCTCTCTGGATTCAAAGAAAGCAGAGGGTTTCCACCGATGATTTACACGGCGATAGACACGTTCTACCTGAGCGATGACGACCTGGAGAACTCGCCGTCGAGAAAGGACGGCATAGATGAAGCCACAGAGACCACGCTCAGAATCTACGGCTGTGATTTGATTCAAGAAAGCGGCATTCTGCTCAGAATGCCTCAGGCTGTGATGGCCACCGGTCAGGTTCTGTTTCACCGTTTCTATTGCAAGAAGTCTTTTGCTCGCTTCCATGTCAAGAAAGTTGCTGCTAGTTGTCTGTGGCTTGCATCAAAGCTGGAGGAATGTCCTAAGAAAGCTAGACAGGTGATTATTGTTTTCCACAGAACGGAATGTAGGAGGGAGAACTTACCAATTGAGCATTTGGATCCACAATCAAAGAAATATTCAGACTTGAAGATGGAGTTGAGTAGAACAGAGAGACATATTTTGAAAGAGATGGGTTTCATTTGCCATGTTGAACATCCCCACAAGTTCATTTCGAATTACCTTGCCACTCTTGAATCACCTCCAGAATTAACGCAAGAAGCCTGGAATTTAGCAAATGACAGTTTGCGTACAACTTTGTGTGTTCGATTCAAGAGTGAGGTAGTTGCTTGTGGTGTTGTGTATGCTGCTGCTCGGAGGTTTCGTGTCCCCCTTCCTGAGAATCCCCCATGGTGGAAGGCATTTGATGCTGATAAATCAGGGATTGATGAAGTTTGTAGGGTTCTGGCTCATCTGTATAGTCTTCCTAAAGCTCAATATATTCCAGTCTGCAAGGATGGAGATTCATTTACATTTTCTAGCAACAAATGGAATTCACAGTCCCAGCCAATTTCAAAGGAAGTTCCTAAGAGTAGCCCACCAACTATTGCTGAGACATCTAATTCAAATGCACTGGCAGCAGCAGTGAATCCTGAATCTTCTGGATCAAAGGGTGTAAGCAAAACAGCCATTGATAAGGTAAAGGATTCTAAAGAAAGTGATGATGAATCTAAGAGCATGCCTGTTGATTTAGAGGGAAGAGAAGATATGAATATAAAATCCAAGGCTGAACGCAGCAAAAGCAGGGACAGGGACAGGGATAGGGATAGGGAGAGGGAAAGAGACAGGGACAGGGATAGAATAAAGGTCCGAGATCGTGAACGGGGAGATCGAGAGGAAGCTGAGAGGGATAGAACCAAGGACCGGGGTCATCGTTCTAAGGACAGAGCAAAAGATTCAGGGGGGCATTCAGAGAAATCAAGACATTACTCATCACGAGATCGTGACTATCACAGTTCCTCTTATTCTTCAAGGGAGAAGGATCGCTATAGACATCACCCCTATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

478

Amino Acids

54.94

Weight (kDa)

9.27

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 60 - 189 4.7e-11 Cyclin, N-terminal domain
CycT2-like_C PF21797 195 - 267 4.9e-08 Cyclin-T2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08820
fragaria_vesca FvH4_6g10271
malus_domestica MD04G1168200.v1.1 MD09G1180100.v1.1
prunus_persica Prupe.6G286400_v2.0.a1
pyrus_communis pycom04g01680 pycom04g14920
rosa_chinensis RchiOBHm_Chr3g0461021
rosa_laevigata RLG00000024957
rosa_multiflora Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002
rosa_rugosa Rorug03G0047900
rosa_samantha Rh3AG105200 Rh3BG109200 Rh3DG110900
rosa_wichuraiana Rw3G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 42, 261
AclWI GGATC 5 cut(s) 74, 482, 495, 1039, 1416
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 655, 919
AfaI GTAC 1 cut(s) 679
AfiI CCNNNNNNNGG 3 cut(s) 448, 780, 1290
AflIII ACRYGT 1 cut(s) 147
AgeI ACCGGT 1 cut(s) 299
AjnI CCWGG 2 cut(s) 171, 650
AluBI AGCT 5 cut(s) 39, 397, 419, 860, 1268
AluI AGCT 5 cut(s) 39, 397, 419, 860, 1268
Alw26I GTCTC 4 cut(s) 212, 535, 974, 1203
AlwI GGATC 5 cut(s) 74, 482, 495, 1039, 1416
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 7 cut(s) 72, 368, 734, 737, 1004, 1007, 1161
ApoI RAATTY 2 cut(s) 655, 919
AsiGI ACCGGT 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 1234, 1288
AsuC2I CCSGG 1 cut(s) 1292
AsuHPI GGTGA 4 cut(s) 308, 439, 618, 1415
AsuII TTCGAA 1 cut(s) 602
AvaII GGWCC 2 cut(s) 1234, 1288
AxyI CCTNAGG 1 cut(s) 282
BalI TGGCCA 1 cut(s) 296
BamHI GGATCC 1 cut(s) 487
BauI CACGAG 1 cut(s) 1362
BbsI GAAGAC 1 cut(s) 842
BbvI GCAGC 7 cut(s) 84, 355, 721, 724, 1016, 1019, 1173
BccI CCATC 4 cut(s) 286, 514, 553, 878
BceAI ACGGC 4 cut(s) 153, 169, 214, 253
BciT130I CCWGG 2 cut(s) 173, 652
BcnI CCSGG 1 cut(s) 1292
BcoDI GTCTC 4 cut(s) 212, 535, 974, 1203
BfaI CTAG 3 cut(s) 372, 420, 906
BfmI CTRYAG 2 cut(s) 70, 1414
BisI GCNGC 8 cut(s) 73, 262, 369, 735, 738, 1005, 1008, 1162
BlsI GCNGC 8 cut(s) 74, 263, 370, 736, 739, 1006, 1009, 1163
Bme1390I CCNGG 3 cut(s) 173, 652, 1292
Bme18I GGWCC 2 cut(s) 1234, 1288
BmgT120I GGNCC 2 cut(s) 1234, 1288
BmiI GGNNCC 1 cut(s) 489
BmrFI CCNGG 3 cut(s) 173, 652, 1292
BmsI GCATC 2 cut(s) 398, 784
BoxI GACNNNNGTC 1 cut(s) 1293
BpiI GAAGAC 1 cut(s) 842
BpmI CTGGAG 3 cut(s) 194, 419, 615
Bpu10I CCTNAGC 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 1292
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 4 cut(s) 776, 1149, 1284, 1291
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 736, 766
Bsc4I CCNNNNNNNGG 3 cut(s) 448, 780, 1290
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 3 cut(s) 82, 872, 1005
Bse21I CCTNAGG 1 cut(s) 282
BseBI CCWGG 2 cut(s) 173, 652
BseDI CCNNGG 4 cut(s) 776, 1149, 1284, 1291
BseGI GGATG 2 cut(s) 583, 889
BseLI CCNNNNNNNGG 3 cut(s) 448, 780, 1290
BseMII CTCAG 7 cut(s) 149, 241, 286, 296, 756, 969, 1260
BseNI ACTGG 3 cut(s) 82, 872, 1005
BseXI GCAGC 7 cut(s) 84, 355, 721, 724, 1016, 1019, 1173
BseYI CCCAGC 1 cut(s) 930
BshFI GGCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 299
BsiSI CCGG 2 cut(s) 300, 1291
BslFI GGGAC 5 cut(s) 740, 913, 1187, 1193, 1229
BslI CCNNNNNNNGG 3 cut(s) 448, 780, 1290
BsmAI GTCTC 4 cut(s) 212, 535, 974, 1203
BsmFI GGGAC 5 cut(s) 740, 913, 1187, 1193, 1229
BsmI GAATGC 3 cut(s) 264, 282, 1333
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 602
Bsp143I GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
Bsp19I CCATGG 1 cut(s) 776
BspACI CCGC 2 cut(s) 42, 261
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 7 cut(s) 150, 240, 285, 295, 757, 970, 1261
BspLI GGNNCC 1 cut(s) 489
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 5 cut(s) 74, 482, 495, 1039, 1416
BspT104I TTCGAA 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 299
BsrI ACTGG 3 cut(s) 82, 872, 1005
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 4 cut(s) 776, 1149, 1284, 1291
BssMI GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
BssSI CACGAG 1 cut(s) 1362
BssT1I CCWWGG 3 cut(s) 776, 1149, 1284
Bst2BI CACGAG 1 cut(s) 1362
Bst2UI CCWGG 2 cut(s) 173, 652
Bst4CI ACNGT 4 cut(s) 320, 671, 927, 1382
Bst6I CTCTTC 1 cut(s) 1120
BstAPI GCANNNNNTGC 1 cut(s) 794
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 3 cut(s) 346, 387, 1106
BstDSI CCRYGG 1 cut(s) 776
BstF5I GGATG 2 cut(s) 583, 889
BstKTI GATC 8 cut(s) 9, 69, 490, 1034, 1243, 1258, 1369, 1411
BstMAI GTCTC 4 cut(s) 212, 535, 974, 1203
BstMBI GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
BstMWI GCNNNNNNNGC 6 cut(s) 78, 277, 293, 794, 1004, 1167
BstNI CCWGG 2 cut(s) 173, 652
BstNSI RCATGY 1 cut(s) 1108
BstPAI GACNNNNGTC 1 cut(s) 1293
BstSCI CCNGG 3 cut(s) 171, 650, 1290
BstSFI CTRYAG 2 cut(s) 70, 1414
BstV1I GCAGC 7 cut(s) 84, 355, 721, 724, 1016, 1019, 1173
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 3 cut(s) 6, 66, 487
BstYI RGATCY 3 cut(s) 6, 66, 487
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 776
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 2 cut(s) 583, 889
BtsI GCAGTG 1 cut(s) 1017
BtsIMutI CAGTG 3 cut(s) 75, 998, 1017
Cac8I GCNNGC 3 cut(s) 346, 387, 1106
CaiI CAGNNNCTG 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 1234, 1288
Csp6I GTAC 1 cut(s) 678
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 4 cut(s) 353, 575, 777, 1105
CviQI GTAC 1 cut(s) 678
DpnI GATC 8 cut(s) 8, 68, 489, 1033, 1242, 1257, 1368, 1410
DpnII GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 1120
EarI CTCTTC 1 cut(s) 1120
Eco130I CCWWGG 3 cut(s) 776, 1149, 1284
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 1234, 1288
Eco81I CCTNAGG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 919
EcoRII CCWGG 2 cut(s) 171, 650
EcoT14I CCWWGG 3 cut(s) 776, 1149, 1284
ErhI CCWWGG 3 cut(s) 776, 1149, 1284
FaeI CATG 4 cut(s) 356, 578, 780, 1108
FalI AAGNNNNNCTT 2 cut(s) 28, 60
FaqI GGGAC 5 cut(s) 740, 913, 1187, 1193, 1229
FatI CATG 4 cut(s) 352, 574, 776, 1104
Fnu4HI GCNGC 8 cut(s) 73, 262, 369, 735, 738, 1005, 1008, 1162
FokI GGATG 2 cut(s) 570, 896
Fsp4HI GCNGC 8 cut(s) 73, 262, 369, 735, 738, 1005, 1008, 1162
FspBI CTAG 3 cut(s) 372, 420, 906
GluI GCNGC 8 cut(s) 73, 262, 369, 735, 738, 1005, 1008, 1162
GsaI CCCAGC 1 cut(s) 934
GsuI CTGGAG 3 cut(s) 194, 419, 615
HaeIII GGCC 1 cut(s) 296
HapII CCGG 2 cut(s) 300, 1291
Hin1II CATG 4 cut(s) 356, 578, 780, 1108
HpaII CCGG 2 cut(s) 300, 1291
HphI GGTGA 4 cut(s) 308, 439, 618, 1415
Hpy166II GTNNAC 1 cut(s) 1247
Hpy188I TCNGA 7 cut(s) 11, 230, 275, 511, 744, 1238, 1339
Hpy8I GTNNAC 1 cut(s) 1247
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 770, 778, 1399
HpyCH4III ACNGT 4 cut(s) 320, 671, 927, 1382
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 6 cut(s) 4, 72, 330, 389, 879, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 277, 293, 794, 1004, 1167
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 4 cut(s) 356, 578, 780, 1108
Kzo9I GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 7 cut(s) 84, 355, 721, 724, 1016, 1019, 1173
LweI GCATC 2 cut(s) 398, 784
MaeI CTAG 3 cut(s) 372, 420, 906
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 1370
MalI GATC 8 cut(s) 8, 68, 489, 1033, 1242, 1257, 1368, 1410
MboI GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
MboII GAAGA 7 cut(s) 70, 529, 842, 1017, 1137, 1142, 1386
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 3 cut(s) 6, 66, 487
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 7 cut(s) 474, 604, 635, 655, 919, 936, 988
MluNI TGGCCA 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 34
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 1 cut(s) 1428
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 2 cut(s) 300, 1291
MspR9I CCNGG 3 cut(s) 173, 652, 1292
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 3 cut(s) 264, 282, 1333
MvaI CCWGG 2 cut(s) 173, 652
MwoI GCNNNNNNNGC 6 cut(s) 78, 277, 293, 794, 1004, 1167
NciI CCSGG 1 cut(s) 1292
NcoI CCATGG 1 cut(s) 776
NdeII GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
NlaIII CATG 4 cut(s) 356, 578, 780, 1108
NlaIV GGNNCC 1 cut(s) 489
NmuCI GTSAC 1 cut(s) 1370
NspI RCATGY 1 cut(s) 1108
NspV TTCGAA 1 cut(s) 602
PaeI GCATGC 1 cut(s) 1108
PcsI WCGNNNNNNNCGW 2 cut(s) 748, 1255
PctI GAATGC 3 cut(s) 264, 282, 1333
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 8 cut(s) 74, 263, 370, 736, 739, 1006, 1009, 1163
PshAI GACNNNNGTC 1 cut(s) 1293
Psp6I CCWGG 2 cut(s) 171, 650
PspFI CCCAGC 1 cut(s) 930
PspGI CCWGG 2 cut(s) 171, 650
PspN4I GGNNCC 1 cut(s) 489
PspPI GGNCC 2 cut(s) 1234, 1288
PstI CTGCAG 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 3 cut(s) 6, 66, 487
RsaI GTAC 1 cut(s) 679
RsaNI GTAC 1 cut(s) 678
RseI CAYNNNNRTG 1 cut(s) 1428
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 8 cut(s) 73, 262, 369, 735, 738, 1005, 1008, 1162
Sau3AI GATC 8 cut(s) 6, 66, 487, 1031, 1240, 1255, 1366, 1408
Sau96I GGNCC 2 cut(s) 1234, 1288
ScrFI CCNGG 3 cut(s) 173, 652, 1292
SfaNI GCATC 2 cut(s) 398, 784
SfcI CTRYAG 2 cut(s) 70, 1414
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 2 cut(s) 1234, 1288
SmiMI CAYNNNNRTG 1 cut(s) 1428
SphI GCATGC 1 cut(s) 1108
Sse9I AATT 7 cut(s) 474, 604, 635, 655, 919, 936, 988
SsiI CCGC 2 cut(s) 42, 261
SspI AATATT 1 cut(s) 506
SspMI CTAG 3 cut(s) 372, 420, 906
StyD4I CCNGG 3 cut(s) 171, 650, 1290
StyI CCWWGG 3 cut(s) 776, 1149, 1284
TaaI ACNGT 4 cut(s) 320, 671, 927, 1382
TaiI ACGT 1 cut(s) 152
TaqI TCGA 4 cut(s) 188, 602, 694, 1258
TasI AATT 7 cut(s) 474, 604, 635, 655, 919, 936, 988
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 3 cut(s) 82, 1005, 1017
TseFI GTSAC 1 cut(s) 1370
TseI GCWGC 7 cut(s) 72, 368, 734, 737, 1004, 1007, 1161
Tsp45I GTSAC 1 cut(s) 1370
TspDTI ATGAA 7 cut(s) 222, 556, 586, 831, 882, 1107, 1151
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 3 cut(s) 82, 1005, 1017
VpaK11BI GGWCC 2 cut(s) 1234, 1288
XapI RAATTY 2 cut(s) 655, 919
XceI RCATGY 1 cut(s) 1108
XspI CTAG 3 cut(s) 372, 420, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.