Rh3DG110900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014523
Physical Location & Seq
Reverse (-)
9076884 .. 9078950
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG110900.1

Sequence Viewer

Length: 2067 bp
ATGACCGCCTTGGCCAGTAGAGTGTCCCCTGCAATTTCCAAGGCTTTGGAGACCAAGCAGTGCCTCGTTGAAGGCCTCACCTCCTTCAAGCACCTCAAGCATGCCCACGCTCGGCTGCTCCGCCTCGGCCTCGGCCAGGACAACTACCTTCTCAACTTGGTCTTGCGCTCCGCCTTCGATTTTGGGCAGACCGACTACGCTCGTACCGTCTTTCACCAAATCACAGAGCCCAACATTTATCTCTGGAACACCATTATCCGGGGATTGGTTTCGAACGAATGTTGGGAAGATGCAGTCAGATTCTACGGTTCAATGCGGAACGAGGGGTTCTTCCCCAACAGCTACACTTTCCCTTTTGTTTTGAAGGCGTGTGCGAGGCGTTTGGACTTGCAATTGGGGTTGAAGATTCACACACTTGTGGTGAAGACGGGTTTTGACTTTGATGTTTATGTGAAAACTAGTCTGCTTTTCTTGTATGCGAAGTGTGGGTATATGGAACATGCGCGTAAGGTATTCGATGATTTGCCTGAGAAGAATGTTGTTTCTTGGACTGCCGTAGTTTCCGGGTATATTCGAGCTGGGAAGTATAGGGAAGCTATTGATACATTTCTGAGGTTGTTGGAGATGGGTTTGAGGCCTGATAGTCTAAGCCTTGTTCGGGCTTTATCGGCGTGTAGTCAGTTAGGGGATTTACGCAGTGGGGAGTGGATAGATAATTACATTACGGAGATTGGGATGGCGAGGAATGTGTTTGTGGCTACCTCTTTGGTTGATTTGTATGCCAAGTGTGGTAACATGGAGAAAGCGCGTCTTGTGTTTGATGGAATAGCTGAGAAGGATATAGTTGCTTGGAGTAGCATGATTCAGGGATATGCATCGAATGGGCTTCCTAAAGAAGCCGTAGACCTCTTCTTTCAAATGCAGAAAGAGAACTTGAAACCAGATTGTTATGCCATGGTAGGGGTGCTTTCTGCTTGTTCTAGATTAGGAGCTCTAGAGCTAGGGGAGTGGGCTAGCAATTTGGTGGACAGGAATGAAATTTTTATTAACCCTGTTCTTGGTACAGCTCTGATTGACATGTATGCGAAATGTGGGAGCATGGTCCAAGCTTGGGAAGTCTTTAAAGGGATGAAGAAGAAAGACCATGTGGTTTGGAATGCAGCGATGTCTGGATTAGCTATGAACGGACATGTCAAAGCTGTGTTCGGACTATTTGGACAAGTGGAGAAATATGGATTTAGAGCTAATGGGAACACTTTCATGGGCTTGCTTTGTGGATGTTCTCATGCTGGTCTGGTTGATGAGGGTCGTAGATATTTCAGTAACATGACTAGGGTCTATTCCTTGACACCTACGATTGAGCATTATGGATGTATGGTAGACCTCCTTGGCCGTGCGGGTTTGTTGGATGAAGCTTATCAGTTGATTGAAAGTATGCCAATGAAGGCGAACTCTGTTGTTTGGGGAGCGTTGTTGGGTGGATGTAGGCTGCATCGGGATACTCAATTGGCTGAACTCGCACTGAAACAACTCATTGAGCTCGAACCATGGAACTCAGCACATTATGTTCTCCTCTCAAATGTTTACTCTGCAAGTCAGAAATGGGATGAGGCAGCCAACATCAGATCAAGAATGAATGAGCAAGGGCTGCAGAAAATCCCAGGTTGCAGCTGGATCGAAGTAAACGGGGTTGTTCACGAATTCCTTGTGGGAGACAAGTCCCACGAGCTATCCGACAAGATATACCCAAAACTCGACGAGCTGGCCAAGGATCTAAAAGCAGCAGGTTATGTTCCAACCACGGATTTCGTGTTGTTCGACATAGAAGAGGAAGAGAAGCAGCATTTCCTCGGTTGTCACAGCGAGAAGCTCGCCATTGCATTTGCTCTCATCGCCACTGCCCCCCAAGACACCATTCGAGTTTCAAAGAACCTCCGCGTATGCGGCGATTGCCACCAGGCCATAAAGCTCATCTCCAAGATCACAGGGAGAGAGATCATTGTTCGCGACAATAACCGATTCCATCGGTTCCTTGATGGTTCATGTTCATGTAAAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

688

Amino Acids

77.25

Weight (kDa)

6.99

Isoelectric Point (pI)

35.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 77 - 126 1.9e-11 PPR repeat family
PPR_2 PF13041 178 - 217 6.8e-06 PPR repeat family
PPR_2 PF13041 279 - 327 9.2e-10 PPR repeat family
PPR PF01535 282 - 311 2.9e-08 PPR repeat
E_motif PF20431 498 - 560 7.8e-21 E motif
Eplus_motif PF20430 565 - 590 4.7e-06 E+ motif
DYW_deaminase PF14432 596 - 688 7.2e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08820
fragaria_vesca FvH4_6g10271
malus_domestica MD04G1168200.v1.1 MD09G1180100.v1.1
prunus_persica Prupe.6G286400_v2.0.a1
pyrus_communis pycom04g01680 pycom04g14920
rosa_chinensis RchiOBHm_Chr3g0461021
rosa_laevigata RLG00000024957
rosa_multiflora Rmu_co8035226.1_g000001 Rmu_sc0000601.1_g000001 Rmu_sc0000601.1_g000002
rosa_rugosa Rorug03G0047900
rosa_samantha Rh3AG105200 Rh3BG109200 Rh3DG110900
rosa_wichuraiana Rw3G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1775
AccI GTMKAC 2 cut(s) 903, 1380
AccII CGCG 4 cut(s) 505, 808, 1938, 2007
AciI CCGC 7 cut(s) 6, 121, 171, 316, 1397, 1936, 1944
AclWI GGATC 2 cut(s) 1682, 1779
AcoI YGGCCR 4 cut(s) 12, 133, 1390, 1764
AcsI RAATTY 2 cut(s) 1038, 1700
AfaI GTAC 2 cut(s) 205, 1063
AfiI CCNNNNNNNGG 8 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111
AflIII ACRYGT 2 cut(s) 1077, 1189
AgsI TTSAA 9 cut(s) 71, 88, 312, 364, 403, 917, 937, 1430, 1926
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 3 cut(s) 135, 1660, 1956
AjuI GAANNNNNNNTTGG 2 cut(s) 1899, 1931
AleI CACNNNNGTG 1 cut(s) 416
Alw21I GWGCWC 2 cut(s) 994, 1542
Alw26I GTCTC 2 cut(s) 44, 1707
AlwI GGATC 2 cut(s) 1682, 1779
AoxI GGCC 8 cut(s) 12, 73, 127, 133, 635, 1390, 1764, 1959
ApeKI GCWGC 8 cut(s) 115, 1160, 1489, 1613, 1648, 1668, 1781, 1840
ApoI RAATTY 2 cut(s) 1038, 1700
Asp700I GAANNNNTTC 1 cut(s) 1256
AspLEI GCGC 3 cut(s) 168, 505, 808
AspS9I GGNCC 1 cut(s) 1102
AsuC2I CCSGG 2 cut(s) 260, 565
AsuHPI GGTGA 3 cut(s) 70, 206, 433
AsuII TTCGAA 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 1013
AvaII GGWCC 1 cut(s) 1102
BaeI ACNNNNGTAYC 2 cut(s) 187, 220
BalI TGGCCA 2 cut(s) 14, 1766
BanII GRGCYC 3 cut(s) 231, 994, 1542
BauI CACGAG 1 cut(s) 1724
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 2 cut(s) 994, 1542
BbvI GCAGC 8 cut(s) 102, 1172, 1476, 1625, 1635, 1680, 1793, 1852
BccI CCATC 5 cut(s) 619, 730, 815, 2030, 2031
BceAI ACGGC 3 cut(s) 539, 884, 1377
BcgI CGANNNNNNTGC 2 cut(s) 1657, 1691
BciT130I CCWGG 3 cut(s) 137, 1662, 1958
BciVI GTATCC 1 cut(s) 1492
BcnI CCSGG 2 cut(s) 260, 565
BcoDI GTCTC 2 cut(s) 44, 1707
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 6 cut(s) 459, 981, 995, 1001, 1014, 1332
BfmI CTRYAG 1 cut(s) 1649
BfuAI ACCTGC 1 cut(s) 1775
BfuI GTATCC 1 cut(s) 1492
BisI GCNGC 9 cut(s) 116, 1161, 1490, 1614, 1649, 1669, 1782, 1841, 1945
BlsI GCNGC 9 cut(s) 117, 1162, 1491, 1615, 1650, 1670, 1783, 1842, 1946
Bme1390I CCNGG 5 cut(s) 137, 260, 565, 1662, 1958
Bme18I GGWCC 1 cut(s) 1102
BmgT120I GGNCC 1 cut(s) 1102
BmiI GGNNCC 1 cut(s) 2030
BmrFI CCNGG 5 cut(s) 137, 260, 565, 1662, 1958
BmsI GCATC 3 cut(s) 280, 884, 1501
BmtI GCTAGC 1 cut(s) 1017
BoxI GACNNNNGTC 1 cut(s) 1334
BpiI GAAGAC 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 80
BpuMI CCSGG 2 cut(s) 260, 565
BsaBI GATNNNNATC 1 cut(s) 874
BsaI GGTCTC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 8 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111
Bse1I ACTGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 1875
Bse8I GATNNNNATC 1 cut(s) 874
BseBI CCWGG 3 cut(s) 137, 1662, 1958
BseGI GGATG 7 cut(s) 741, 1134, 1283, 1376, 1414, 1487, 1612
BseJI GATNNNNATC 1 cut(s) 874
BseLI CCNNNNNNNGG 8 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111
BseMI GCAATG 1 cut(s) 1875
BseMII CTCAG 4 cut(s) 519, 602, 822, 1569
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 1562
BseXI GCAGC 8 cut(s) 102, 1172, 1476, 1625, 1635, 1680, 1793, 1852
BseYI CCCAGC 1 cut(s) 578
Bsh1236I CGCG 4 cut(s) 505, 808, 1938, 2007
BshFI GGCC 8 cut(s) 14, 75, 129, 135, 637, 1392, 1766, 1961
BsiHKAI GWGCWC 2 cut(s) 994, 1542
BsiSI CCGG 2 cut(s) 259, 564
BslFI GGGAC 2 cut(s) 10, 1705
BslI CCNNNNNNNGG 8 cut(s) 111, 136, 258, 265, 658, 960, 1058, 1111
BsmAI GTCTC 2 cut(s) 44, 1707
BsmFI GGGAC 2 cut(s) 10, 1705
BsmI GAATGC 1 cut(s) 1162
BsnI GGCC 8 cut(s) 14, 75, 129, 135, 637, 1392, 1766, 1961
Bso31I GGTCTC 1 cut(s) 44
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 231, 994, 1542
Bsp143I GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
Bsp19I CCATGG 2 cut(s) 954, 1547
Bsp68I TCGCGA 1 cut(s) 2007
BspACI CCGC 7 cut(s) 6, 121, 171, 316, 1397, 1936, 1944
BspANI GGCC 8 cut(s) 14, 75, 129, 135, 637, 1392, 1766, 1961
BspCNI CTCAG 4 cut(s) 520, 603, 823, 1568
BspFNI CGCG 4 cut(s) 505, 808, 1938, 2007
BspLI GGNNCC 1 cut(s) 2030
BspMAI CTGCAG 1 cut(s) 1653
BspMI ACCTGC 1 cut(s) 1775
BspOI GCTAGC 1 cut(s) 1017
BspPI GGATC 2 cut(s) 1682, 1779
BspT104I TTCGAA 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 1875
BsrI ACTGG 1 cut(s) 15
BssMI GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
BssSI CACGAG 1 cut(s) 1724
BssT1I CCWWGG 6 cut(s) 9, 39, 954, 1387, 1547, 1767
Bst2BI CACGAG 1 cut(s) 1724
Bst2UI CCWGG 3 cut(s) 137, 1662, 1958
Bst4CI ACNGT 2 cut(s) 208, 308
Bst6I CTCTTC 3 cut(s) 914, 1821, 1827
BstAPI GCANNNNNTGC 1 cut(s) 1648
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 5 cut(s) 102, 1015, 1268, 1764, 1872
BstDEI CTNAG 5 cut(s) 528, 611, 647, 831, 1555
BstDSI CCRYGG 3 cut(s) 954, 1547, 1800
BstENI CCTNNNNNAGG 1 cut(s) 134
BstF5I GGATG 7 cut(s) 741, 1134, 1283, 1376, 1414, 1487, 1612
BstFNI CGCG 4 cut(s) 505, 808, 1938, 2007
BstHHI GCGC 3 cut(s) 168, 505, 808
BstKTI GATC 5 cut(s) 1628, 1677, 1774, 1983, 1998
BstMAI GTCTC 2 cut(s) 44, 1707
BstMBI GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
BstMWI GCNNNNNNNGC 7 cut(s) 97, 668, 1517, 1648, 1892, 1944, 1950
BstNI CCWGG 3 cut(s) 137, 1662, 1958
BstNSI RCATGY 4 cut(s) 104, 503, 1081, 1193
BstPAI GACNNNNGTC 1 cut(s) 1334
BstSCI CCNGG 5 cut(s) 135, 258, 563, 1660, 1956
BstSFI CTRYAG 1 cut(s) 1649
BstUI CGCG 4 cut(s) 505, 808, 1938, 2007
BstV1I GCAGC 8 cut(s) 102, 1172, 1476, 1625, 1635, 1680, 1793, 1852
BstV2I GAAGAC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 1771
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 1 cut(s) 1771
BsuI GTATCC 1 cut(s) 1492
BsuRI GGCC 8 cut(s) 14, 75, 129, 135, 637, 1392, 1766, 1961
BtgI CCRYGG 3 cut(s) 954, 1547, 1800
BtgZI GCGATG 2 cut(s) 1178, 1876
BtsCI GGATG 7 cut(s) 741, 1134, 1283, 1376, 1414, 1487, 1612
BtsI GCAGTG 3 cut(s) 65, 703, 1896
BtsIMutI CAGTG 4 cut(s) 65, 703, 1520, 1896
BtuMI TCGCGA 1 cut(s) 2007
BveI ACCTGC 1 cut(s) 1775
Cac8I GCNNGC 5 cut(s) 102, 1015, 1268, 1764, 1872
CfoI GCGC 3 cut(s) 168, 505, 808
Cfr13I GGNCC 1 cut(s) 1102
CseI GACGC 1 cut(s) 797
Csp6I GTAC 2 cut(s) 204, 1062
CviQI GTAC 2 cut(s) 204, 1062
DdeI CTNAG 5 cut(s) 528, 611, 647, 831, 1555
DpnI GATC 5 cut(s) 1627, 1676, 1773, 1982, 1997
DpnII GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
DraI TTTAAA 1 cut(s) 1123
EaeI YGGCCR 4 cut(s) 12, 133, 1390, 1764
Eam1104I CTCTTC 3 cut(s) 914, 1821, 1827
EarI CTCTTC 3 cut(s) 914, 1821, 1827
EciI GGCGGA 2 cut(s) 110, 160
Ecl136II GAGCTC 2 cut(s) 992, 1540
Eco130I CCWWGG 6 cut(s) 9, 39, 954, 1387, 1547, 1767
Eco147I AGGCCT 2 cut(s) 75, 637
Eco24I GRGCYC 3 cut(s) 231, 994, 1542
Eco31I GGTCTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 1102
Eco53kI GAGCTC 2 cut(s) 992, 1540
EcoICRI GAGCTC 2 cut(s) 992, 1540
EcoNI CCTNNNNNAGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 1700
EcoRII CCWGG 3 cut(s) 135, 1660, 1956
EcoT14I CCWWGG 6 cut(s) 9, 39, 954, 1387, 1547, 1767
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 3 cut(s) 231, 994, 1542
ErhI CCWWGG 6 cut(s) 9, 39, 954, 1387, 1547, 1767
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 2 cut(s) 10, 1705
FauI CCCGC 1 cut(s) 1390
FblI GTMKAC 2 cut(s) 903, 1380
Fnu4HI GCNGC 9 cut(s) 116, 1161, 1490, 1614, 1649, 1669, 1782, 1841, 1945
FokI GGATG 7 cut(s) 748, 1141, 1290, 1383, 1421, 1494, 1619
FriOI GRGCYC 3 cut(s) 231, 994, 1542
Fsp4HI GCNGC 9 cut(s) 116, 1161, 1490, 1614, 1649, 1669, 1782, 1841, 1945
FspBI CTAG 6 cut(s) 459, 981, 995, 1001, 1014, 1332
GlaI GCGC 3 cut(s) 167, 504, 807
GluI GCNGC 9 cut(s) 116, 1161, 1490, 1614, 1649, 1669, 1782, 1841, 1945
GsaI CCCAGC 1 cut(s) 582
HaeIII GGCC 8 cut(s) 14, 75, 129, 135, 637, 1392, 1766, 1961
HapII CCGG 2 cut(s) 259, 564
HgaI GACGC 1 cut(s) 797
HhaI GCGC 3 cut(s) 168, 505, 808
Hin6I GCGC 3 cut(s) 166, 503, 806
HinP1I GCGC 3 cut(s) 166, 503, 806
HindIII AAGCTT 2 cut(s) 1107, 1413
HinfI GANTC 4 cut(s) 300, 406, 862, 2019
HpaII CCGG 2 cut(s) 259, 564
HphI GGTGA 3 cut(s) 70, 206, 433
Hpy166II GTNNAC 6 cut(s) 904, 1027, 1381, 1585, 1684, 1696
Hpy188I TCNGA 7 cut(s) 299, 612, 1071, 1208, 1599, 1625, 1735
Hpy188III TCNNGA 8 cut(s) 244, 981, 995, 1170, 1496, 1629, 1697, 2006
Hpy8I GTNNAC 6 cut(s) 904, 1027, 1381, 1585, 1684, 1696
Hpy99I CGWCG 1 cut(s) 1760
HpyAV CCTTC 7 cut(s) 65, 94, 158, 184, 358, 829, 1438
HpyCH4III ACNGT 2 cut(s) 208, 308
HpyF10VI GCNNNNNNNGC 7 cut(s) 97, 668, 1517, 1648, 1892, 1944, 1950
HpyF3I CTNAG 5 cut(s) 528, 611, 647, 831, 1555
HspAI GCGC 3 cut(s) 166, 503, 806
Kzo9I GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
LmnI GCTCC 5 cut(s) 123, 173, 989, 1095, 1466
Lsp1109I GCAGC 8 cut(s) 102, 1172, 1476, 1625, 1635, 1680, 1793, 1852
LweI GCATC 3 cut(s) 280, 884, 1501
MaeI CTAG 6 cut(s) 459, 981, 995, 1001, 1014, 1332
MaeIII GTNAC 3 cut(s) 791, 1322, 1856
MalI GATC 5 cut(s) 1627, 1676, 1773, 1982, 1997
MboI GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
MfeI CAATTG 2 cut(s) 392, 1505
MflI RGATCY 1 cut(s) 1771
MhlI GDGCHC 3 cut(s) 231, 994, 1542
MlsI TGGCCA 2 cut(s) 14, 1766
MluCI AATT 7 cut(s) 33, 392, 715, 1018, 1038, 1505, 1700
MluNI TGGCCA 2 cut(s) 14, 1766
MmeI TCCRAC 4 cut(s) 600, 1386, 1758, 1820
Mox20I TGGCCA 2 cut(s) 14, 1766
Mph1103I ATGCAT 1 cut(s) 877
MroXI GAANNNNTTC 1 cut(s) 1256
MscI TGGCCA 2 cut(s) 14, 1766
MseI TTAA 2 cut(s) 1047, 1122
MslI CAYNNNNRTG 3 cut(s) 416, 1259, 2047
Msp20I TGGCCA 2 cut(s) 14, 1766
MspA1I CMGCKG 1 cut(s) 1671
MspI CCGG 2 cut(s) 259, 564
MspR9I CCNGG 5 cut(s) 137, 260, 565, 1662, 1958
MunI CAATTG 2 cut(s) 392, 1505
Mva1269I GAATGC 1 cut(s) 1162
MvaI CCWGG 3 cut(s) 137, 1662, 1958
MvnI CGCG 4 cut(s) 505, 808, 1938, 2007
MwoI GCNNNNNNNGC 7 cut(s) 97, 668, 1517, 1648, 1892, 1944, 1950
NciI CCSGG 2 cut(s) 260, 565
NcoI CCATGG 2 cut(s) 954, 1547
NdeII GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
NheI GCTAGC 1 cut(s) 1013
NlaIV GGNNCC 1 cut(s) 2030
NmeAIII GCCGAG 3 cut(s) 91, 105, 111
NmuCI GTSAC 1 cut(s) 1856
NruI TCGCGA 1 cut(s) 2007
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 4 cut(s) 104, 503, 1081, 1193
NspV TTCGAA 1 cut(s) 272
OliI CACNNNNGTG 1 cut(s) 416
PaeI GCATGC 1 cut(s) 104
PceI AGGCCT 2 cut(s) 75, 637
PciI ACATGT 2 cut(s) 1077, 1189
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 1731, 1815
PctI GAATGC 1 cut(s) 1162
PdmI GAANNNNTTC 1 cut(s) 1256
PfeI GAWTC 4 cut(s) 300, 406, 862, 2019
PkrI GCNGC 9 cut(s) 117, 1162, 1491, 1615, 1650, 1670, 1783, 1842, 1946
PscI ACATGT 2 cut(s) 1077, 1189
PshAI GACNNNNGTC 1 cut(s) 1334
Psp124BI GAGCTC 2 cut(s) 994, 1542
Psp6I CCWGG 3 cut(s) 135, 1660, 1956
PspFI CCCAGC 1 cut(s) 578
PspGI CCWGG 3 cut(s) 135, 1660, 1956
PspN4I GGNNCC 1 cut(s) 2030
PspPI GGNCC 1 cut(s) 1102
PstI CTGCAG 1 cut(s) 1653
PsuI RGATCY 1 cut(s) 1771
PvuII CAGCTG 1 cut(s) 1671
RruI TCGCGA 1 cut(s) 2007
RsaI GTAC 2 cut(s) 205, 1063
RsaNI GTAC 2 cut(s) 204, 1062
RseI CAYNNNNRTG 3 cut(s) 416, 1259, 2047
SacI GAGCTC 2 cut(s) 994, 1542
SaqAI TTAA 2 cut(s) 1047, 1122
SatI GCNGC 9 cut(s) 116, 1161, 1490, 1614, 1649, 1669, 1782, 1841, 1945
Sau3AI GATC 5 cut(s) 1625, 1674, 1771, 1980, 1995
Sau96I GGNCC 1 cut(s) 1102
ScrFI CCNGG 5 cut(s) 137, 260, 565, 1662, 1958
SduI GDGCHC 3 cut(s) 231, 994, 1542
SfaNI GCATC 3 cut(s) 280, 884, 1501
SfcI CTRYAG 1 cut(s) 1649
SfuI TTCGAA 1 cut(s) 272
SinI GGWCC 1 cut(s) 1102
SmiMI CAYNNNNRTG 3 cut(s) 416, 1259, 2047
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 458
SphI GCATGC 1 cut(s) 104
Sse9I AATT 7 cut(s) 33, 392, 715, 1018, 1038, 1505, 1700
SseBI AGGCCT 2 cut(s) 75, 637
SsiI CCGC 7 cut(s) 6, 121, 171, 316, 1397, 1936, 1944
SspMI CTAG 6 cut(s) 459, 981, 995, 1001, 1014, 1332
SstI GAGCTC 2 cut(s) 994, 1542
StuI AGGCCT 2 cut(s) 75, 637
StyD4I CCNGG 5 cut(s) 135, 258, 563, 1660, 1956
StyI CCWWGG 6 cut(s) 9, 39, 954, 1387, 1547, 1767
TaaI ACNGT 2 cut(s) 208, 308
TaqII GACCGA 1 cut(s) 206
TasI AATT 7 cut(s) 33, 392, 715, 1018, 1038, 1505, 1700
TauI GCSGC 1 cut(s) 1947
TfiI GAWTC 4 cut(s) 300, 406, 862, 2019
Tru1I TTAA 2 cut(s) 1047, 1122
Tru9I TTAA 2 cut(s) 1047, 1122
TscAI CASTG 4 cut(s) 65, 703, 1527, 1903
TseFI GTSAC 1 cut(s) 1856
TseI GCWGC 8 cut(s) 115, 1160, 1489, 1613, 1648, 1668, 1781, 1840
Tsp45I GTSAC 1 cut(s) 1856
TspDTI ATGAA 9 cut(s) 1050, 1145, 1196, 1249, 1425, 1457, 1649, 2031, 2037
TspGWI ACGGA 3 cut(s) 740, 1200, 1817
TspRI CASTG 4 cut(s) 65, 703, 1527, 1903
VpaK11BI GGWCC 1 cut(s) 1102
XagI CCTNNNNNAGG 1 cut(s) 134
XapI RAATTY 2 cut(s) 1038, 1700
XbaI TCTAGA 2 cut(s) 980, 994
XceI RCATGY 4 cut(s) 104, 503, 1081, 1193
XcmI CCANNNNNNNNNTGG 1 cut(s) 1668
XmiI GTMKAC 2 cut(s) 903, 1380
XmnI GAANNNNTTC 1 cut(s) 1256
XspI CTAG 6 cut(s) 459, 981, 995, 1001, 1014, 1332
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.