FvH4_6g10470

G-type lectin S-receptor-like serine threonine-protein kinase SD2-5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013054
Physical Location & Seq
Forward (+)
6270226 .. 6271980
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10470.t1

Sequence Viewer

Length: 1392 bp
ATGCTGCTCTACTACTACTTGTTCATTTCTCTCACTCTTTTCGTCACTCATGGCTCCTCCAAGCCAGAGATTCATATTGGCTACAACCTCACTTTGGCAGTGCCTGTTGAATACACCATGGGATTCATTGGCAGAGCTTTTCTCATGGATACCAATCCAACCATACCCAGTTTCAGAGCTGCGTTGAGTGTTGAAGCTTATAATGGGAAGTACTCATGCTCCTTTCAGGTCTTTCTTGGAAATGTCAAGGTGTGGAGTTCTGGCCACTACTCGAAGTTTTATACATCGAATGTATGTGTACTTGAACTCACCAATGATGGAGATTTAAGGCTGAAGGGTCCAAAAGACAGGGTGGGATGGAGAACTGGGACTTCTGGACAAGGTGTGGAGAGGTTACAGTTATTGAGGACAGGGAATCTAGTACTAGTTGATGGCTTGGATCGGATCAAATGGCAGAGTTTTAATTTTCCTACTGATGTGATGCTTTGGGGTCAAAGACTTAGTGTAGCGTCACGCTTGACTTCGTTTCCAAGCAATTCAAGTTCATACTACTCGATGGAAATTGAGCACAGCAAGATTGCTCTCTACTTGAATACCGGTAAGAAAAACTATTCGTATTGGGAATTTAAGCCTTCCAAGAACAGAAATATTGCTTTCATTCAATTGGGTCTAAAAGGATTAGAGTTATACAGTGATAAAGGTAAGAAAATCGCGCAGATAAATCCGTCCGAGGAAACAATACAGCCCCTGCGGTTTTTGGCTTTGGGGAATGAAACAGGAAATTTGAGGTTTTATTTTTACTCACCCAGCTTGGCAAAATTTGATGCCTCTTTTCAAGCACTCAACACAACATGTGATCTTCCATTGGCTTGTAAGCCTTATGGCATTTGTACTGCGTCAAGTGCTTGTTCATGCATTCAAGTTTTGACAACGAAAAATGAGACTAGTACTGGTACTTCTGGTTGCATTGAAGGAATTTCATCAGATGGGTTTTGTGGAAGAGGCAAGGCAGAAATGCTTGAATTGGAGAGTGTCACTAGTGTGTTAAGGGGGGATTCTAAGATAGTTAATGTGAGCAAAGAAGAATGTGGTAATTTGTGCTTGGAAGATTGTAAATGTGCATCTGCATTACATAACTCTGAAGAATGCTTTCTGTATGGAATGGTGATTGGGGTTAAACAGGTTGAAAGGGGAAGGCAGTTGAGTTACATGGTTAAGGTTCCAAAGGGATTCAGTCATGGGGGTCATGGAAAGTCCAATGTGAAAAAATGGGTGTTGATCTTGGTAGGAGTTGTTGATGGTGTGATTGTTCTTGCTCTCTTTGGAGGTCTTGGCTACTACTTGATAAGAAAACGAAGAAGACACTCATTGCCTAATGGCCATAACAATTGA

Protein Analysis

464

Amino Acids

51.37

Weight (kDa)

9.07

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 96 - 171 1.4e-10 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51710
fragaria_vesca FvH4_6g10470
malus_domestica MD04G1170300.v1.1 MD12G1184300.v1.1
prunus_persica Prupe.4G286300_v2.0.a1 Prupe.6G289100_v2.0.a1
pyrus_communis pycom12g17300
rosa_chinensis RchiOBHm_Chr3g0461371
rosa_laevigata RLG00000024937
rosa_multiflora Rmu_sc0002677.1_g000023
rosa_roxburghii Rroxscaffold_6G00418360 Rroxscaffold_6G00418660
rosa_rugosa Rorug03G0049700
rosa_samantha Rh3AG107800 Rh3BG111800 Rh3CG113600 Rh3DG113600
rosa_wichuraiana Rw3G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccII CGCG 1 cut(s) 713
AciI CCGC 1 cut(s) 751
AclWI GGATC 2 cut(s) 447, 452
AcoI YGGCCR 2 cut(s) 262, 1378
AcsI RAATTY 4 cut(s) 623, 781, 818, 975
AcuI CTGAAG 2 cut(s) 353, 1161
AfaI GTAC 6 cut(s) 212, 300, 423, 892, 949, 955
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 851
AgeI ACCGGT 1 cut(s) 596
AhlI ACTAGT 3 cut(s) 424, 944, 1037
AleI CACNNNNGTG 1 cut(s) 1040
AluBI AGCT 4 cut(s) 137, 179, 197, 810
AluI AGCT 4 cut(s) 137, 179, 197, 810
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 935
AlwI GGATC 2 cut(s) 447, 452
AlwNI CAGNNNCTG 2 cut(s) 104, 748
AoxI GGCC 2 cut(s) 262, 1378
ApeKI GCWGC 2 cut(s) 4, 179
ApoI RAATTY 4 cut(s) 623, 781, 818, 975
AsiGI ACCGGT 1 cut(s) 596
Asp700I GAANNNNTTC 1 cut(s) 1149
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 3 cut(s) 301, 795, 1177
AvaII GGWCC 1 cut(s) 338
BalI TGGCCA 2 cut(s) 264, 1380
BarI GAAGNNNNNNTAC 2 cut(s) 940, 972
BbsI GAAGAC 1 cut(s) 1366
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 166
BccI CCATC 6 cut(s) 311, 351, 425, 550, 980, 1292
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 935
BcuI ACTAGT 3 cut(s) 424, 944, 1037
BfaI CTAG 4 cut(s) 419, 425, 945, 1038
BfuI GTATCC 1 cut(s) 142
BisI GCNGC 2 cut(s) 5, 180
BlsI GCNGC 2 cut(s) 6, 181
BmcAI AGTACT 3 cut(s) 212, 423, 949
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 3 cut(s) 55, 339, 1221
BmrI ACTGGG 2 cut(s) 162, 375
BmsI GCATC 3 cut(s) 471, 814, 1130
BmuI ACTGGG 2 cut(s) 162, 375
BpiI GAAGAC 1 cut(s) 1366
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 117, 729
BsaWI WCCGGW 1 cut(s) 596
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 596
Bse1I ACTGG 3 cut(s) 168, 370, 955
Bse3DI GCAATG 1 cut(s) 1367
Bse8I GATNNNNATC 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 117, 729
BseGI GGATG 1 cut(s) 362
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 1367
BseNI ACTGG 3 cut(s) 168, 370, 955
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 166
BseYI CCCAGC 1 cut(s) 806
Bsh1236I CGCG 1 cut(s) 713
BshFI GGCC 2 cut(s) 264, 1380
BshTI ACCGGT 1 cut(s) 596
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 597
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 935
BsmFI GGGAC 1 cut(s) 382
BsmI GAATGC 2 cut(s) 915, 1151
BsnI GGCC 2 cut(s) 264, 1380
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 439, 444, 856, 1278
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 1 cut(s) 751
BspANI GGCC 2 cut(s) 264, 1380
BspFNI CGCG 1 cut(s) 713
BspLI GGNNCC 3 cut(s) 55, 339, 1221
BspPI GGATC 2 cut(s) 447, 452
BsrDI GCAATG 1 cut(s) 1367
BsrFI RCCGGY 1 cut(s) 596
BsrI ACTGG 3 cut(s) 168, 370, 955
BssAI RCCGGY 1 cut(s) 596
BssECI CCNNGG 2 cut(s) 117, 729
BssMI GATC 4 cut(s) 439, 444, 856, 1278
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 399, 692
Bst6I CTCTTC 1 cut(s) 994
BstDEI CTNAG 2 cut(s) 500, 1059
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 362
BstFNI CGCG 1 cut(s) 713
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 4 cut(s) 442, 447, 859, 1281
BstMAI GTCTC 1 cut(s) 935
BstMBI GATC 4 cut(s) 439, 444, 856, 1278
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNSI RCATGY 1 cut(s) 855
BstUI CGCG 1 cut(s) 713
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 1366
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 264, 1380
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 362
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 105, 697
CaiI CAGNNNCTG 2 cut(s) 104, 748
CfoI GCGC 1 cut(s) 715
Cfr10I RCCGGY 1 cut(s) 596
Cfr13I GGNCC 1 cut(s) 338
CseI GACGC 2 cut(s) 498, 885
Csp6I GTAC 6 cut(s) 211, 299, 422, 891, 948, 954
CspAI ACCGGT 1 cut(s) 596
CviAII CATG 9 cut(s) 50, 118, 145, 216, 852, 912, 1210, 1238, 1247
CviQI GTAC 6 cut(s) 211, 299, 422, 891, 948, 954
DdeI CTNAG 2 cut(s) 500, 1059
DpnI GATC 4 cut(s) 441, 446, 858, 1280
DpnII GATC 4 cut(s) 439, 444, 856, 1278
EaeI YGGCCR 2 cut(s) 262, 1378
Eam1104I CTCTTC 1 cut(s) 994
EarI CTCTTC 1 cut(s) 994
Eco130I CCWWGG 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 338
Eco57I CTGAAG 2 cut(s) 353, 1161
EcoT14I CCWWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 917
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 9 cut(s) 53, 121, 148, 219, 855, 915, 1213, 1241, 1250
FaqI GGGAC 1 cut(s) 382
FatI CATG 9 cut(s) 49, 117, 144, 215, 851, 911, 1209, 1237, 1246
Fnu4HI GCNGC 2 cut(s) 5, 180
FokI GGATG 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 5, 180
FspBI CTAG 4 cut(s) 419, 425, 945, 1038
GlaI GCGC 1 cut(s) 714
GluI GCNGC 2 cut(s) 5, 180
GsaI CCCAGC 1 cut(s) 810
HaeIII GGCC 2 cut(s) 264, 1380
HapII CCGG 1 cut(s) 597
HgaI GACGC 2 cut(s) 498, 885
HhaI GCGC 1 cut(s) 715
Hin1II CATG 9 cut(s) 53, 121, 148, 219, 855, 915, 1213, 1241, 1250
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 5 cut(s) 70, 123, 415, 1055, 1230
HpaII CCGG 1 cut(s) 597
HphI GGTGA 3 cut(s) 301, 795, 1177
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 176, 444, 730, 985, 1141
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 4 cut(s) 328, 642, 965, 1188
HpyCH4III ACNGT 2 cut(s) 399, 692
HpyCH4V TGCA 4 cut(s) 915, 966, 1121, 1127
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 2 cut(s) 500, 1059
Hsp92II CATG 9 cut(s) 53, 121, 148, 219, 855, 915, 1213, 1241, 1250
HspAI GCGC 1 cut(s) 713
Kzo9I GATC 4 cut(s) 439, 444, 856, 1278
LmnI GCTCC 2 cut(s) 59, 224
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 3 cut(s) 471, 814, 1130
MaeI CTAG 4 cut(s) 419, 425, 945, 1038
MaeIII GTNAC 5 cut(s) 43, 393, 510, 1033, 1205
MalI GATC 4 cut(s) 441, 446, 858, 1280
MboI GATC 4 cut(s) 439, 444, 856, 1278
MboII GAAGA 7 cut(s) 851, 1011, 1094, 1118, 1154, 1368, 1371
MfeI CAATTG 2 cut(s) 662, 1387
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 2 cut(s) 264, 1380
MluNI TGGCCA 2 cut(s) 264, 1380
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 9 cut(s) 67, 98, 384, 399, 724, 780, 838, 995, 1319
Mox20I TGGCCA 2 cut(s) 264, 1380
Mph1103I ATGCAT 1 cut(s) 917
MroXI GAANNNNTTC 1 cut(s) 1149
MscI TGGCCA 2 cut(s) 264, 1380
MseI TTAA 7 cut(s) 326, 462, 627, 1046, 1068, 1176, 1215
MslI CAYNNNNRTG 1 cut(s) 1040
Msp20I TGGCCA 2 cut(s) 264, 1380
MspI CCGG 1 cut(s) 597
MunI CAATTG 2 cut(s) 662, 1387
Mva1269I GAATGC 2 cut(s) 915, 1151
MvnI CGCG 1 cut(s) 713
MwoI GCNNNNNNNGC 1 cut(s) 902
NcoI CCATGG 1 cut(s) 117
NdeII GATC 4 cut(s) 439, 444, 856, 1278
NlaIII CATG 9 cut(s) 53, 121, 148, 219, 855, 915, 1213, 1241, 1250
NlaIV GGNNCC 3 cut(s) 55, 339, 1221
NmuCI GTSAC 3 cut(s) 43, 510, 1033
NsiI ATGCAT 1 cut(s) 917
NspI RCATGY 1 cut(s) 855
OliI CACNNNNGTG 1 cut(s) 1040
PciI ACATGT 1 cut(s) 851
PctI GAATGC 2 cut(s) 915, 1151
PdmI GAANNNNTTC 1 cut(s) 1149
PfeI GAWTC 5 cut(s) 70, 123, 415, 1055, 1230
PinAI ACCGGT 1 cut(s) 596
PkrI GCNGC 2 cut(s) 6, 181
PscI ACATGT 1 cut(s) 851
PsiI TTATAA 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 806
PspN4I GGNNCC 3 cut(s) 55, 339, 1221
PspPI GGNCC 1 cut(s) 338
PstNI CAGNNNCTG 2 cut(s) 104, 748
RsaI GTAC 6 cut(s) 212, 300, 423, 892, 949, 955
RsaNI GTAC 6 cut(s) 211, 299, 422, 891, 948, 954
RseI CAYNNNNRTG 1 cut(s) 1040
SaqAI TTAA 7 cut(s) 326, 462, 627, 1046, 1068, 1176, 1215
SatI GCNGC 2 cut(s) 5, 180
Sau3AI GATC 4 cut(s) 439, 444, 856, 1278
Sau96I GGNCC 1 cut(s) 338
ScaI AGTACT 3 cut(s) 212, 423, 949
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 3 cut(s) 471, 814, 1130
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 1 cut(s) 1040
SpeI ACTAGT 3 cut(s) 424, 944, 1037
SsiI CCGC 1 cut(s) 751
SspI AATATT 1 cut(s) 649
SspMI CTAG 4 cut(s) 419, 425, 945, 1038
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 399, 692
TaqI TCGA 3 cut(s) 272, 287, 554
TatI WGTACW 5 cut(s) 210, 298, 421, 890, 947
TfiI GAWTC 5 cut(s) 70, 123, 415, 1055, 1230
Tru1I TTAA 7 cut(s) 326, 462, 627, 1046, 1068, 1176, 1215
Tru9I TTAA 7 cut(s) 326, 462, 627, 1046, 1068, 1176, 1215
TscAI CASTG 2 cut(s) 105, 697
TseFI GTSAC 3 cut(s) 43, 510, 1033
TseI GCWGC 2 cut(s) 4, 179
Tsp45I GTSAC 3 cut(s) 43, 510, 1033
TspDTI ATGAA 8 cut(s) 13, 62, 115, 534, 646, 786, 900, 969
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 2 cut(s) 105, 697
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 4 cut(s) 623, 781, 818, 975
XceI RCATGY 1 cut(s) 855
XmnI GAANNNNTTC 1 cut(s) 1149
XspI CTAG 4 cut(s) 419, 425, 945, 1038
ZrmI AGTACT 3 cut(s) 212, 423, 949
Zsp2I ATGCAT 1 cut(s) 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.