Prupe.6G289100_v2.0.a1

G-type lectin S-receptor-like serine threonine-protein kinase SD2-5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013054
Physical Location & Seq
Forward (+)
26710540 .. 26712602
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G289100.1

Sequence Viewer

Length: 1419 bp
ATGCAGCTCTATTTGTTCATTTCTCTCTCTCTTTTCTTCACTTATGGCCATTCCAAAACAGATATCTCTCTTGGGTACCAGCTCACTGTGGCAGTGCCTATTGAATACAGTTTGGGATTCATTGGGAGAGCTTTTTTGATGGAGACAAATGAAATCACACCAACTTTTAAAACTGCATTGAGTGTTGAAGCTGTGAATGACAAATACTCATGCTCCTTAGAAGTCTTTCTTGGAGATGTCAAGGTTTGGAACTCTGGTCATTACTCAAAGTTTTATACTTCAAATATATGCGTCCTTCAACTTACCCAAGATGGAGATTTGAAGTTGAAGGGTCCAAAAGACAGAGTCGGATGGAGAACTGGGACTTCTGGACAAGGTGTGCAGAGGTTAGAGATATTAAGGACAGGAAATTTAGTTCTGCTAGATGGGTTGGGCAATATCAAGTGGCAGAGTTTTAATTTTCCAACTGATGTAATGCTTTGGGGTCAGAGACTAAGTGTGGCTTCTAGGTTGATTTCATTTCCAACCAACTCCACTTCATACTACTCACTTGAAATTGAACAGAGCAGGATTGCTCTCTACTTGAATTCTGGTAAGTGGAACTATTCCTATTGGGAATTTAAGCCTACCAAGAACAGAAACATCGCTTATGTTCAACTGGGTCGCAAGGGTTTGGAGTTATTCAATGACAAACTAAAGAAAATTGCGCAGATTCATCCATCTGATCATCAAACAGTTCAGTTTGGTCAGCCCCTGAGGTTCTTAGCATTGGGGAACAGAACAGGAAATTTGAAGCTATATTTTTACTCACCCAGCATTGCTAAATTTGATGTTGCTTTTCAAGCACTCAACACCACATGTGATCTTCCATTGGCTTGTAAGCCTTATGGGATTTGCACCTTGTCCAGTGCTTGTTCATGCATTCAAGTTTTGATAGCTGAAAATGAGACCAGTATAAGTGGTAATTCTGATTGCAGTCAAGGAATTTCAGGTGTTTGTGGCAATGGCAAGACTAAAGCAGAGATGCTTGAATTAAAGGGTGTTGGTAGTGTTTTGAGGGGTGCTCCTAAAATAGTTAATGTGAGCAAAGAAGCATGTGCTAATTTGTGCTTAGAAGACTGTAATTGTACATCTGCATTGTATTCAACTGCAAAAGGAGGCATGGAAGTAGAAGAGTGCTTTCTTTATGGAATGGTAATTGGGGTTAAACAGGTTGAAAGGGGAAGTGGATTAAGCTACATGGTTAAGGTTCGAAAAGGAGCTCATGGGGGCCATGGAAAGTCCAATTTGAAAAGGTGGGTTTTGGTCCTGGTGGGTGTGGTTGATGGGTTGATTATTCTTCTGGTTTTTGGAGGCCTTGGCTACTACTTGATAAAGAAGAGAAGAAAACAGACATTGCCTAATGGCCATAACAATTGA

Protein Analysis

473

Amino Acids

52.15

Weight (kDa)

9.15

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51710
fragaria_vesca FvH4_6g10470
malus_domestica MD04G1170300.v1.1 MD12G1184300.v1.1
prunus_persica Prupe.4G286300_v2.0.a1 Prupe.6G289100_v2.0.a1
pyrus_communis pycom12g17300
rosa_chinensis RchiOBHm_Chr3g0461371
rosa_laevigata RLG00000024937
rosa_multiflora Rmu_sc0002677.1_g000023
rosa_roxburghii Rroxscaffold_6G00418360 Rroxscaffold_6G00418660
rosa_rugosa Rorug03G0049700
rosa_samantha Rh3AG107800 Rh3BG111800 Rh3CG113600 Rh3DG113600
rosa_wichuraiana Rw3G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 708
Acc65I GGTACC 1 cut(s) 75
AccB1I GGYRCC 1 cut(s) 75
AcoI YGGCCR 2 cut(s) 46, 1405
AcsI RAATTY 6 cut(s) 409, 586, 617, 787, 824, 984
AfaI GTAC 2 cut(s) 77, 1129
AflIII ACRYGT 1 cut(s) 857
AjnI CCWGG 1 cut(s) 1308
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 8 cut(s) 7, 82, 131, 191, 796, 938, 1236, 1262
AluI AGCT 8 cut(s) 7, 82, 131, 191, 796, 938, 1236, 1262
Alw21I GWGCWC 2 cut(s) 1066, 1264
Alw26I GTCTC 3 cut(s) 137, 484, 941
AlwNI CAGNNNCTG 1 cut(s) 754
AoxI GGCC 4 cut(s) 46, 1270, 1354, 1405
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 6 cut(s) 409, 586, 617, 787, 824, 984
Asp700I GAANNNNTTC 1 cut(s) 225
Asp718I GGTACC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 3 cut(s) 332, 1270, 1306
AsuHPI GGTGA 1 cut(s) 801
AsuII TTCGAA 1 cut(s) 1252
AvaII GGWCC 2 cut(s) 332, 1306
AxyI CCTNAGG 1 cut(s) 755
BalI TGGCCA 2 cut(s) 48, 1407
BanI GGYRCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 1264
BbsI GAAGAC 1 cut(s) 1122
Bbv12I GWGCWC 2 cut(s) 1066, 1264
BbvI GCAGC 1 cut(s) 16
BccI CCATC 6 cut(s) 133, 305, 345, 419, 727, 1319
BciT130I CCWGG 1 cut(s) 1310
BclI TGATCA 1 cut(s) 724
BcoDI GTCTC 3 cut(s) 137, 484, 941
BfaI CTAG 2 cut(s) 422, 507
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 1310
Bme18I GGWCC 2 cut(s) 332, 1306
BmgT120I GGNCC 3 cut(s) 332, 1270, 1306
BmiI GGNNCC 3 cut(s) 77, 333, 1271
BmrFI CCNGG 1 cut(s) 1310
BmrI ACTGGG 2 cut(s) 369, 668
BmsI GCATC 1 cut(s) 1014
BmuI ACTGGG 2 cut(s) 369, 668
BpiI GAAGAC 1 cut(s) 1122
BplI GAGNNNNNCTC 2 cut(s) 1048, 1080
Bpu14I TTCGAA 1 cut(s) 1252
BsaI GGTCTC 1 cut(s) 941
BsaJI CCNNGG 2 cut(s) 1273, 1357
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 4 cut(s) 364, 663, 906, 951
Bse21I CCTNAGG 1 cut(s) 755
Bse3DI GCAATG 3 cut(s) 816, 1009, 1394
BseBI CCWGG 1 cut(s) 1310
BseDI CCNNGG 2 cut(s) 1273, 1357
BseGI GGATG 2 cut(s) 356, 715
BseMI GCAATG 3 cut(s) 816, 1009, 1394
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 4 cut(s) 364, 663, 906, 951
BseXI GCAGC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 812
BsgI GTGCAG 1 cut(s) 401
BshFI GGCC 4 cut(s) 48, 1272, 1356, 1407
BshNI GGYRCC 1 cut(s) 75
BsiHKAI GWGCWC 2 cut(s) 1066, 1264
BslFI GGGAC 1 cut(s) 376
BsmAI GTCTC 3 cut(s) 137, 484, 941
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 4 cut(s) 48, 1272, 1356, 1407
Bso31I GGTCTC 1 cut(s) 941
Bsp119I TTCGAA 1 cut(s) 1252
Bsp1286I GDGCHC 2 cut(s) 1066, 1264
Bsp1407I TGTACA 1 cut(s) 1127
Bsp143I GATC 2 cut(s) 724, 862
Bsp19I CCATGG 1 cut(s) 1273
BspANI GGCC 4 cut(s) 48, 1272, 1356, 1407
BspCNI CTCAG 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 77, 333, 1271
BspT104I TTCGAA 1 cut(s) 1252
BspT107I GGYRCC 1 cut(s) 75
BspTNI GGTCTC 1 cut(s) 941
BsrDI GCAATG 3 cut(s) 816, 1009, 1394
BsrGI TGTACA 1 cut(s) 1127
BsrI ACTGG 4 cut(s) 364, 663, 906, 951
BssECI CCNNGG 2 cut(s) 1273, 1357
BssMI GATC 2 cut(s) 724, 862
BssT1I CCWWGG 2 cut(s) 1273, 1357
Bst2UI CCWGG 1 cut(s) 1310
Bst4CI ACNGT 4 cut(s) 88, 110, 736, 1121
Bst6I CTCTTC 2 cut(s) 1167, 1373
BstAUI TGTACA 1 cut(s) 1127
BstBI TTCGAA 1 cut(s) 1252
BstDEI CTNAG 5 cut(s) 217, 494, 755, 763, 1111
BstDSI CCRYGG 1 cut(s) 1273
BstF5I GGATG 2 cut(s) 356, 715
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 2 cut(s) 727, 865
BstMAI GTCTC 3 cut(s) 137, 484, 941
BstMBI GATC 2 cut(s) 724, 862
BstMWI GCNNNNNNNGC 1 cut(s) 842
BstNI CCWGG 1 cut(s) 1310
BstNSI RCATGY 2 cut(s) 861, 1098
BstSCI CCNGG 1 cut(s) 1308
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 1122
Bsu36I CCTNAGG 1 cut(s) 755
BsuRI GGCC 4 cut(s) 48, 1272, 1356, 1407
BtgI CCRYGG 1 cut(s) 1273
BtgZI GCGATG 1 cut(s) 628
BtsCI GGATG 2 cut(s) 356, 715
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 3 cut(s) 84, 99, 913
CaiI CAGNNNCTG 1 cut(s) 754
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 3 cut(s) 332, 1270, 1306
CseI GACGC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 76, 1128
CviAII CATG 8 cut(s) 210, 858, 918, 1095, 1162, 1240, 1265, 1274
CviQI GTAC 2 cut(s) 76, 1128
DdeI CTNAG 5 cut(s) 217, 494, 755, 763, 1111
DpnI GATC 2 cut(s) 726, 864
DpnII GATC 2 cut(s) 724, 862
DraI TTTAAA 1 cut(s) 169
EaeI YGGCCR 2 cut(s) 46, 1405
Eam1104I CTCTTC 2 cut(s) 1167, 1373
EarI CTCTTC 2 cut(s) 1167, 1373
Ecl136II GAGCTC 1 cut(s) 1262
Eco130I CCWWGG 2 cut(s) 1273, 1357
Eco147I AGGCCT 1 cut(s) 1356
Eco24I GRGCYC 1 cut(s) 1264
Eco31I GGTCTC 1 cut(s) 941
Eco32I GATATC 1 cut(s) 64
Eco47I GGWCC 2 cut(s) 332, 1306
Eco53kI GAGCTC 1 cut(s) 1262
Eco81I CCTNAGG 1 cut(s) 755
EcoICRI GAGCTC 1 cut(s) 1262
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 1308
EcoRV GATATC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 1273, 1357
EcoT22I ATGCAT 1 cut(s) 923
EcoT38I GRGCYC 1 cut(s) 1264
ErhI CCWWGG 2 cut(s) 1273, 1357
FaeI CATG 8 cut(s) 213, 861, 921, 1098, 1165, 1243, 1268, 1277
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 487, 519
FaqI GGGAC 1 cut(s) 376
FatI CATG 8 cut(s) 209, 857, 917, 1094, 1161, 1239, 1264, 1273
FbaI TGATCA 1 cut(s) 724
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 363, 702
FriOI GRGCYC 1 cut(s) 1264
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 422, 507
FspI TGCGCA 1 cut(s) 708
GlaI GCGC 1 cut(s) 708
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 816
HaeIII GGCC 4 cut(s) 48, 1272, 1356, 1407
HgaI GACGC 1 cut(s) 280
HhaI GCGC 1 cut(s) 709
Hin1II CATG 8 cut(s) 213, 861, 921, 1098, 1165, 1243, 1268, 1277
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HinfI GANTC 3 cut(s) 117, 345, 712
HphI GGTGA 1 cut(s) 801
Hpy188I TCNGA 4 cut(s) 350, 489, 724, 970
Hpy188III TCNNGA 1 cut(s) 369
HpyAV CCTTC 2 cut(s) 305, 322
HpyCH4III ACNGT 4 cut(s) 88, 110, 736, 1121
HpyCH4V TGCA 8 cut(s) 4, 176, 382, 897, 921, 975, 1136, 1151
HpyF10VI GCNNNNNNNGC 1 cut(s) 842
HpyF3I CTNAG 5 cut(s) 217, 494, 755, 763, 1111
Hsp92II CATG 8 cut(s) 213, 861, 921, 1098, 1165, 1243, 1268, 1277
HspAI GCGC 1 cut(s) 707
KpnI GGTACC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 724
Kzo9I GATC 2 cut(s) 724, 862
LmnI GCTCC 3 cut(s) 218, 1069, 1259
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 1014
MaeI CTAG 2 cut(s) 422, 507
MalI GATC 2 cut(s) 726, 864
MboI GATC 2 cut(s) 724, 862
MboII GAAGA 7 cut(s) 28, 857, 1127, 1184, 1331, 1390, 1395
MfeI CAATTG 1 cut(s) 1414
MhlI GDGCHC 2 cut(s) 1066, 1264
MlsI TGGCCA 2 cut(s) 48, 1407
MluNI TGGCCA 2 cut(s) 48, 1407
MlyI GAGTC 1 cut(s) 354
MmeI TCCRAC 3 cut(s) 328, 488, 548
MnlI CCTC 5 cut(s) 378, 750, 1050, 1151, 1346
Mox20I TGGCCA 2 cut(s) 48, 1407
Mph1103I ATGCAT 1 cut(s) 923
MroXI GAANNNNTTC 1 cut(s) 225
MscI TGGCCA 2 cut(s) 48, 1407
MseI TTAA 9 cut(s) 168, 398, 456, 621, 1034, 1077, 1206, 1232, 1245
Msp20I TGGCCA 2 cut(s) 48, 1407
MspR9I CCNGG 1 cut(s) 1310
MunI CAATTG 1 cut(s) 1414
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 1 cut(s) 1310
MwoI GCNNNNNNNGC 1 cut(s) 842
NcoI CCATGG 1 cut(s) 1273
NdeII GATC 2 cut(s) 724, 862
NlaIII CATG 8 cut(s) 213, 861, 921, 1098, 1165, 1243, 1268, 1277
NlaIV GGNNCC 3 cut(s) 77, 333, 1271
NsbI TGCGCA 1 cut(s) 708
NsiI ATGCAT 1 cut(s) 923
NspI RCATGY 2 cut(s) 861, 1098
NspV TTCGAA 1 cut(s) 1252
PceI AGGCCT 1 cut(s) 1356
PciI ACATGT 1 cut(s) 857
PctI GAATGC 1 cut(s) 921
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 117, 712
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PscI ACATGT 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 1264
Psp6I CCWGG 1 cut(s) 1308
PspFI CCCAGC 1 cut(s) 812
PspGI CCWGG 1 cut(s) 1308
PspN4I GGNNCC 3 cut(s) 77, 333, 1271
PspPI GGNCC 3 cut(s) 332, 1270, 1306
PstNI CAGNNNCTG 1 cut(s) 754
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 2 cut(s) 77, 1129
RsaNI GTAC 2 cut(s) 76, 1128
SacI GAGCTC 1 cut(s) 1264
SaqAI TTAA 9 cut(s) 168, 398, 456, 621, 1034, 1077, 1206, 1232, 1245
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 2 cut(s) 724, 862
Sau96I GGNCC 3 cut(s) 332, 1270, 1306
SchI GAGTC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 1310
SduI GDGCHC 2 cut(s) 1066, 1264
SfaNI GCATC 1 cut(s) 1014
SfuI TTCGAA 1 cut(s) 1252
SinI GGWCC 2 cut(s) 332, 1306
SseBI AGGCCT 1 cut(s) 1356
SspMI CTAG 2 cut(s) 422, 507
SstI GAGCTC 1 cut(s) 1264
StuI AGGCCT 1 cut(s) 1356
StyD4I CCNGG 1 cut(s) 1308
StyI CCWWGG 2 cut(s) 1273, 1357
TaaI ACNGT 4 cut(s) 88, 110, 736, 1121
TaqI TCGA 1 cut(s) 1252
TatI WGTACW 1 cut(s) 1127
TfiI GAWTC 2 cut(s) 117, 712
Tru1I TTAA 9 cut(s) 168, 398, 456, 621, 1034, 1077, 1206, 1232, 1245
Tru9I TTAA 9 cut(s) 168, 398, 456, 621, 1034, 1077, 1206, 1232, 1245
TscAI CASTG 3 cut(s) 91, 99, 913
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 7 cut(s) 7, 109, 165, 507, 528, 704, 906
TspRI CASTG 3 cut(s) 91, 99, 913
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 332, 1306
XapI RAATTY 6 cut(s) 409, 586, 617, 787, 824, 984
XceI RCATGY 2 cut(s) 861, 1098
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 2 cut(s) 422, 507
Zsp2I ATGCAT 1 cut(s) 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.