RchiOBHm_Chr3g0461371

G-type lectin S-receptor-like serine threonine-protein kinase SD2-5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013054
Physical Location & Seq
Forward (+)
9445090 .. 9446639
1550 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42779

Sequence Viewer

Length: 1404 bp
ATGATGCTCTACTACCTGTTCATTTCCCTAACTCTTTTCGTCGCTCATGGCCACTCCAAGCCAGAGATTCATATTGGCTACAACCTCACTTTGGCAGTGCCTGTTGAGTACACCATGGGATTCATTGGCAGAGCTTTTCTAATGGATACCAATCTAACCATACCCAGTTTCAAAGCTGCATTGAGTGTTGAAGCTTTTAATGGGAAGTACTCGTGCTCCTTTCAAGTCTTTCTTGGAAATGTGAAGGTATGGAATTCTGGCCATTACTCCAAGTTTTATACATCGAATGAATGCGTCCTTGAACTCACCAGTGATGGAGATTTAAGGCTGAAGGGTCCAAAAGACAGAGTGGGATGGAGAACTGGGACTTCTGGACAAGGTGTGGAGAGGTTACAGTTACTGAGGACAGGGAATCTAGTACTAGTTGATGGCTTGGACCGGATCAAATGGCAGAGTTTTAATTTTCCGACCGATGTGATGCTTTGGGGTCAGACACTTAGTGTGGCGTCACGCTTGACTTCATTTCCAAGCAATTCAAGTTCATACTACTCGATGGAAATTGAGCACACCAGGATTGCTCTCTACTTGAATTTCGGTAAGCAAAACTATTCGTATTGGGAATTTAAGCCTTCCAAGAACAGAAATATTGCTTTTATTCAATTGGGTCTACAAGGATTAGAGTTATACAGTGATAAAGGTAAGAAAATCGCGCAGATAAATCCATATGAGGAAACAGTTCAGCCCCTGAGATTTTTGGCTTTGGGGAACCAAACAGGGAATTTGAGGCTTTATTTTTACTCACCCAGCTTGGAAAAATTTGATGCTTCTTTTCAAGCACTCAACACAACATGTGATCTTCCATTGGCTTGCAAGCCTTATGGCATTTGTACCTTGTCTGGTGCTTGTTCATGCATTCAAGTTTTGACAACGGAAAATGAGAGTAGTACTAGTACTAGTACTAGTACCAGTTCTAATTGCATTGAAGGAGTTTCATCAGATGGGTTTTGTGGAAGAGGTAAGGCAGAAATGCTTGAACTGGAGAGTGTCACTAGTGTGTTAAGGGGTGCTCCTAAAATAGTTAATGTGAGCAAAGAAGAATGTGGTAAATTGTGCTTGGAAGATTGTAAGTGTGCATCTACATTACATAACTCTGAAGAATGCTTTCTTTATGGAATGGTGATTGGGGTTAAACAGGTTGAAAGGGAAAGTGGGTTGAGTTACATGGTTAAGGTTCCAAAGGGATCAAGTCATGGGGGTCATGGAAAGTCTAATGTGAAAAAATGGGTGTTGATATTGGTAGGAGTTGTTGATGGGGTGATAATTCTTGTTCTCTTTGGAGGTCTTGGCTACTACTTGATTAGAAAAAGAAGAAGACATTCTTTGCCTAATGGCCATAACAATTGA

Protein Analysis

467

Amino Acids

51.82

Weight (kDa)

8.7

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 94 - 170 1.5e-10 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51710
fragaria_vesca FvH4_6g10470
malus_domestica MD04G1170300.v1.1 MD12G1184300.v1.1
prunus_persica Prupe.4G286300_v2.0.a1 Prupe.6G289100_v2.0.a1
pyrus_communis pycom12g17300
rosa_chinensis RchiOBHm_Chr3g0461371
rosa_laevigata RLG00000024937
rosa_multiflora Rmu_sc0002677.1_g000023
rosa_roxburghii Rroxscaffold_6G00418360 Rroxscaffold_6G00418660
rosa_rugosa Rorug03G0049700
rosa_samantha Rh3AG107800 Rh3BG111800 Rh3CG113600 Rh3DG113600
rosa_wichuraiana Rw3G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 667
AccII CGCG 1 cut(s) 710
AclWI GGATC 2 cut(s) 449, 1249
AcoI YGGCCR 3 cut(s) 49, 259, 1390
AcsI RAATTY 5 cut(s) 253, 589, 620, 778, 815
AcuI CTGAAG 2 cut(s) 350, 1173
AcyI GRCGYC 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 8 cut(s) 110, 209, 420, 889, 946, 952, 958, 964
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 848
AhlI ACTAGT 5 cut(s) 421, 947, 953, 959, 1049
AjnI CCWGG 1 cut(s) 569
AleI CACNNNNGTG 1 cut(s) 1052
AluBI AGCT 4 cut(s) 134, 176, 194, 807
AluI AGCT 4 cut(s) 134, 176, 194, 807
Alw21I GWGCWC 3 cut(s) 218, 567, 1069
AlwI GGATC 2 cut(s) 449, 1249
AlwNI CAGNNNCTG 3 cut(s) 101, 400, 745
AoxI GGCC 3 cut(s) 49, 259, 1390
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 5 cut(s) 253, 589, 620, 778, 815
Asp700I GAANNNNTTC 3 cut(s) 735, 1161, 1375
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 335, 436
AsuHPI GGTGA 4 cut(s) 298, 792, 1189, 1327
AvaII GGWCC 2 cut(s) 335, 436
BalI TGGCCA 3 cut(s) 51, 261, 1392
BauI CACGAG 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 1378
Bbv12I GWGCWC 3 cut(s) 218, 567, 1069
BbvI GCAGC 1 cut(s) 163
BccI CCATC 6 cut(s) 308, 348, 422, 547, 992, 1304
BciT130I CCWGG 1 cut(s) 571
BciVI GTATCC 1 cut(s) 139
BcuI ACTAGT 5 cut(s) 421, 947, 953, 959, 1049
BfaI CTAG 6 cut(s) 416, 422, 948, 954, 960, 1050
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmcAI AGTACT 5 cut(s) 209, 420, 946, 952, 958
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 335, 436
BmgT120I GGNCC 2 cut(s) 335, 436
BmiI GGNNCC 3 cut(s) 336, 767, 1233
BmrFI CCNGG 1 cut(s) 571
BmrI ACTGGG 2 cut(s) 159, 372
BmsI GCATC 3 cut(s) 468, 811, 1142
BmuI ACTGGG 2 cut(s) 159, 372
BpiI GAAGAC 1 cut(s) 1378
BpmI CTGGAG 1 cut(s) 1058
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 5 cut(s) 165, 309, 367, 966, 1041
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 392, 737
BseNI ACTGG 5 cut(s) 165, 309, 367, 966, 1041
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 803
Bsh1236I CGCG 1 cut(s) 710
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 3 cut(s) 51, 261, 1392
BsiEI CGRYCG 1 cut(s) 471
BsiHKAI GWGCWC 3 cut(s) 218, 567, 1069
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 3 cut(s) 296, 912, 1163
BsnI GGCC 3 cut(s) 51, 261, 1392
Bsp1286I GDGCHC 3 cut(s) 218, 567, 1069
Bsp143I GATC 3 cut(s) 441, 853, 1241
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 3 cut(s) 51, 261, 1392
BspCNI CTCAG 2 cut(s) 393, 738
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 3 cut(s) 336, 767, 1233
BspPI GGATC 2 cut(s) 449, 1249
BsrI ACTGG 5 cut(s) 165, 309, 367, 966, 1041
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 441, 853, 1241
BssNI GRCGYC 1 cut(s) 506
BssSI CACGAG 1 cut(s) 211
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 3 cut(s) 396, 689, 736
Bst6I CTCTTC 1 cut(s) 1006
BstACI GRCGYC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 868, 872
BstDEI CTNAG 3 cut(s) 401, 497, 746
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 3 cut(s) 444, 856, 1244
BstMBI GATC 3 cut(s) 441, 853, 1241
BstMCI CGRYCG 1 cut(s) 471
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 569
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 1378
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 51, 261, 1392
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 102, 316, 694
Cac8I GCNNGC 2 cut(s) 868, 872
CaiI CAGNNNCTG 3 cut(s) 101, 400, 745
CfoI GCGC 1 cut(s) 712
Cfr13I GGNCC 2 cut(s) 335, 436
CseI GACGC 2 cut(s) 283, 495
Csp6I GTAC 8 cut(s) 109, 208, 419, 888, 945, 951, 957, 963
CviAII CATG 7 cut(s) 47, 115, 849, 909, 1222, 1250, 1259
CviQI GTAC 8 cut(s) 109, 208, 419, 888, 945, 951, 957, 963
DdeI CTNAG 3 cut(s) 401, 497, 746
DpnI GATC 3 cut(s) 443, 855, 1243
DpnII GATC 3 cut(s) 441, 853, 1241
DraIII CACNNNGTG 1 cut(s) 500
EaeI YGGCCR 3 cut(s) 49, 259, 1390
Eam1104I CTCTTC 1 cut(s) 1006
EarI CTCTTC 1 cut(s) 1006
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 335, 436
Eco57I CTGAAG 2 cut(s) 350, 1173
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 7 cut(s) 50, 118, 852, 912, 1225, 1253, 1262
FalI AAGNNNNNCTT 4 cut(s) 216, 248, 1363, 1395
FaqI GGGAC 1 cut(s) 379
FatI CATG 7 cut(s) 46, 114, 848, 908, 1221, 1249, 1258
FauNDI CATATG 1 cut(s) 724
FblI GTMKAC 1 cut(s) 667
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 6 cut(s) 416, 422, 948, 954, 960, 1050
GlaI GCGC 1 cut(s) 711
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 807
GsuI CTGGAG 1 cut(s) 1058
HaeIII GGCC 3 cut(s) 51, 261, 1392
HapII CCGG 1 cut(s) 439
HgaI GACGC 2 cut(s) 283, 495
HhaI GCGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 7 cut(s) 50, 118, 852, 912, 1225, 1253, 1262
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 67, 120, 412
HpaII CCGG 1 cut(s) 439
HphI GGTGA 4 cut(s) 298, 792, 1189, 1327
Hpy166II GTNNAC 2 cut(s) 111, 668
Hpy188I TCNGA 4 cut(s) 468, 492, 997, 1153
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 2 cut(s) 111, 668
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 238, 325, 639, 977
HpyCH4III ACNGT 3 cut(s) 396, 689, 736
HpyCH4V TGCA 5 cut(s) 179, 870, 912, 978, 1133
HpyF3I CTNAG 3 cut(s) 401, 497, 746
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 7 cut(s) 50, 118, 852, 912, 1225, 1253, 1262
HspAI GCGC 1 cut(s) 710
Kzo9I GATC 3 cut(s) 441, 853, 1241
LmnI GCTCC 2 cut(s) 221, 1072
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 3 cut(s) 468, 811, 1142
MaeI CTAG 6 cut(s) 416, 422, 948, 954, 960, 1050
MaeIII GTNAC 5 cut(s) 390, 396, 507, 1045, 1217
MalI GATC 3 cut(s) 443, 855, 1243
MboI GATC 3 cut(s) 441, 853, 1241
MboII GAAGA 7 cut(s) 848, 1023, 1106, 1130, 1166, 1380, 1383
MfeI CAATTG 2 cut(s) 659, 1399
MhlI GDGCHC 3 cut(s) 218, 567, 1069
MlsI TGGCCA 3 cut(s) 51, 261, 1392
MluNI TGGCCA 3 cut(s) 51, 261, 1392
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 7 cut(s) 95, 381, 396, 721, 777, 1007, 1331
Mox20I TGGCCA 3 cut(s) 51, 261, 1392
Mph1103I ATGCAT 1 cut(s) 914
MroXI GAANNNNTTC 3 cut(s) 735, 1161, 1375
MscI TGGCCA 3 cut(s) 51, 261, 1392
MseI TTAA 8 cut(s) 198, 323, 459, 624, 1058, 1080, 1188, 1227
MslI CAYNNNNRTG 1 cut(s) 1052
Msp20I TGGCCA 3 cut(s) 51, 261, 1392
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 571
MunI CAATTG 2 cut(s) 659, 1399
Mva1269I GAATGC 3 cut(s) 296, 912, 1163
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 710
NcoI CCATGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 724
NdeII GATC 3 cut(s) 441, 853, 1241
NlaIII CATG 7 cut(s) 50, 118, 852, 912, 1225, 1253, 1262
NlaIV GGNNCC 3 cut(s) 336, 767, 1233
NmuCI GTSAC 2 cut(s) 507, 1045
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 1052
PciI ACATGT 1 cut(s) 848
PctI GAATGC 3 cut(s) 296, 912, 1163
PdmI GAANNNNTTC 3 cut(s) 735, 1161, 1375
PfeI GAWTC 3 cut(s) 67, 120, 412
PkrI GCNGC 1 cut(s) 178
PscI ACATGT 1 cut(s) 848
Psp6I CCWGG 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 336, 767, 1233
PspPI GGNCC 2 cut(s) 335, 436
PstNI CAGNNNCTG 3 cut(s) 101, 400, 745
RsaI GTAC 8 cut(s) 110, 209, 420, 889, 946, 952, 958, 964
RsaNI GTAC 8 cut(s) 109, 208, 419, 888, 945, 951, 957, 963
RseI CAYNNNNRTG 1 cut(s) 1052
SaqAI TTAA 8 cut(s) 198, 323, 459, 624, 1058, 1080, 1188, 1227
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 441, 853, 1241
Sau96I GGNCC 2 cut(s) 335, 436
ScaI AGTACT 5 cut(s) 209, 420, 946, 952, 958
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 3 cut(s) 218, 567, 1069
SfaNI GCATC 3 cut(s) 468, 811, 1142
SinI GGWCC 2 cut(s) 335, 436
SmiMI CAYNNNNRTG 1 cut(s) 1052
SpeI ACTAGT 5 cut(s) 421, 947, 953, 959, 1049
SspI AATATT 1 cut(s) 646
SspMI CTAG 6 cut(s) 416, 422, 948, 954, 960, 1050
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 396, 689, 736
TaqI TCGA 2 cut(s) 284, 551
TaqII GACCGA 1 cut(s) 485
TatI WGTACW 6 cut(s) 108, 207, 418, 944, 950, 956
TfiI GAWTC 3 cut(s) 67, 120, 412
Tru1I TTAA 8 cut(s) 198, 323, 459, 624, 1058, 1080, 1188, 1227
Tru9I TTAA 8 cut(s) 198, 323, 459, 624, 1058, 1080, 1188, 1227
TscAI CASTG 3 cut(s) 102, 316, 694
TseFI GTSAC 2 cut(s) 507, 1045
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 507, 1045
TspDTI ATGAA 8 cut(s) 10, 59, 112, 303, 510, 531, 897, 981
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 3 cut(s) 102, 316, 694
VpaK11BI GGWCC 2 cut(s) 335, 436
XapI RAATTY 5 cut(s) 253, 589, 620, 778, 815
XceI RCATGY 1 cut(s) 852
XmiI GTMKAC 1 cut(s) 667
XmnI GAANNNNTTC 3 cut(s) 735, 1161, 1375
XspI CTAG 6 cut(s) 416, 422, 948, 954, 960, 1050
ZrmI AGTACT 5 cut(s) 209, 420, 946, 952, 958
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.