Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013054

Physical Location & Seq

Genomic Coordinates Forward (+)

26090697 .. 26092550

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1170300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGCAGCTCTACTTCTTCATCTCTCTCACCATTTTCTTCACTTACGGCTACTCGAAAACCGATGTTCCTCTCGGATACCAGCTCACTCTGGAAGTGCCATTTGAGTACAATGTGGGATTCATTGGGAGAGCTTTTTTGATGGAGAACAATGAAACCAAACCAAGTTTCAAAGTTGCAATGAGTGTTGAAGACGTGAGTGGAAAGTACTCATGTTCCTTGCAAGTCTTTCTTGGAGATGTCAAGGTTTGGAGTTCTGGCCATTACTCAAAGTTTTACACTTCAAATTTATGTGTTCTTGAACTCTCCCATGACGGAGATTTGAGATTGAAGGGCCCAAAAGATAGGGTGGGATGGAGAAGTGGGACTTCTGGACAAGGTGTGCAGAGATTACAGATGTTGAGGACAGGCAATCTAGTTCTAGTTGATGCATTAGGCAGTATAAAGTGGCAGAGTTTTAATTTTCCAACTGATGTAATGCTTTGGGGTCAGAGACTAAGTGTTGCTTCTAGGTTGACTTCATTCCCAAGTAACTCCACTTCATACTATTCTCTTGAAATTGAACCAAGCAGGATTGCTCTCTACTTAAATTCTGGTAAATGGAACTATTCCTATTGGGAATTCAAGCCCACCAAGAACAGAAACATTGCTTATATTCAATTGGGTCCAAAAGGGTTAGAGCTATTCAGTTATAATCAAAAGAAAATTGCACAGATACATCCATCTGATGAAAATTTTCGGTTTCAGCCCATGAGGTTTTTAGCATTGGGGAACCAAACAGGAAATTTGAGGCTCTATTTTTACTCACCTAGCATGTCGAAATTTGATGCTTCTTTTCAAGCGCTAAACACCACTTGTGATCTTCCATTGGCGTGTAAGCCCTACGGAGTTTGTACAGTGTCCGGCACTTGTTCATGCATTCAACTTTTGATGACCGAAAATGGGACAAGTACTAGTACTAGTACTACAGCTTCTGATTGCGGTCAAGGAATTTCATCAAGAGGGTTTTGCAAAAGCGGGAATAAAATGAAGGCGGAGATGCTTGAATTGAAGGGTGTTAGTAGTGTTTTGAGGGGCGCTACAAAGAGTTTTAATGTGAGCAAAGAAGCATGTGGTAATTTGTGCTTAGAGGACTGTAATTGCACAGCTGCATTGTATTCTTCTGCAAAAGGGTGCTTTGTTTTTGGAATGGTAATTGGTGTTAAACAGGTTGAGAATAAGGGAAGCGGATTATTGAGTTATATGGTGAAGGTTCCAAAGGGAGGTCATGGGGGTCATGGGAAGTCAAATTTGAAGAAATGGGTTTTGATCTTGGTAGGAGTGGTTGATGGGTTGATTATTCTTCTTGTTTTTGGAGGGCTTGGATTTTACTTGGTAAGTAAGAGAAGACACTCATTGTCTAATGGCATAGCAACTGACTCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 PAN_3

Protein Analysis

475

Amino Acids

52.28

Weight (kDa)

9.21

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	94 - 169	5.2e-10	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51710
fragaria_vesca	FvH4_6g10470
malus_domestica	MD04G1170300.v1.1 MD12G1184300.v1.1
prunus_persica	Prupe.4G286300_v2.0.a1 Prupe.6G289100_v2.0.a1
pyrus_communis	pycom12g17300
rosa_chinensis	RchiOBHm_Chr3g0461371
rosa_laevigata	RLG00000024937
rosa_multiflora	Rmu_sc0002677.1_g000023
rosa_roxburghii	Rroxscaffold_6G00418360 Rroxscaffold_6G00418660
rosa_rugosa	Rorug03G0049700
rosa_samantha	Rh3AG107800 Rh3BG111800 Rh3CG113600 Rh3DG113600
rosa_wichuraiana	Rw3G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
AciI	CCGC	4 cut(s)	978, 1014, 1031, 1224
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	8 cut(s)	283, 586, 617, 730, 781, 818, 987, 1285
AfaI	GTAC	6 cut(s)	107, 206, 892, 949, 955, 961
AfeI	AGCGCT	1 cut(s)	840
AfiI	CCNNNNNNNGG	2 cut(s)	939, 1259
AhlI	ACTAGT	2 cut(s)	950, 956
AjiI	CACGTC	1 cut(s)	193
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AluBI	AGCT	6 cut(s)	7, 82, 131, 679, 968, 1145
AluI	AGCT	6 cut(s)	7, 82, 131, 679, 968, 1145
Alw26I	GTCTC	1 cut(s)	484
AlwNI	CAGNNNCTG	1 cut(s)	971
Aor51HI	AGCGCT	1 cut(s)	840
AoxI	GGCC	2 cut(s)	256, 331
ApaI	GGGCCC	1 cut(s)	335
ApeKI	GCWGC	2 cut(s)	4, 1145
ApoI	RAATTY	8 cut(s)	283, 586, 617, 730, 781, 818, 987, 1285
Asp700I	GAANNNNTTC	1 cut(s)	732
AspLEI	GCGC	2 cut(s)	841, 1076
AspS9I	GGNCC	3 cut(s)	331, 332, 662
AsuHPI	GGTGA	3 cut(s)	19, 795, 1255
AvaII	GGWCC	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	4 cut(s)	520, 552, 952, 984
BbsI	GAAGAC	2 cut(s)	195, 1390
BbvI	GCAGC	2 cut(s)	16, 1132
BccI	CCATC	4 cut(s)	133, 345, 727, 1319
BceAI	ACGGC	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	484
BcuI	ACTAGT	2 cut(s)	950, 956
BfaI	CTAG	6 cut(s)	413, 419, 507, 807, 951, 957
BfmI	CTRYAG	1 cut(s)	963
BfoI	RGCGCY	2 cut(s)	842, 1077
BfuI	GTATCC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	5, 1146
BlsI	GCNGC	2 cut(s)	6, 1147
BmcAI	AGTACT	4 cut(s)	206, 949, 955, 961
Bme18I	GGWCC	1 cut(s)	662
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	331, 332, 662
BmiI	GGNNCC	4 cut(s)	333, 663, 770, 1251
BmsI	GCATC	3 cut(s)	415, 814, 1026
BpiI	GAAGAC	2 cut(s)	195, 1390
Bsc4I	CCNNNNNNNGG	2 cut(s)	939, 1259
Bse3DI	GCAATG	2 cut(s)	183, 642
BseGI	GGATG	2 cut(s)	356, 715
BseLI	CCNNNNNNNGG	2 cut(s)	939, 1259
BseMI	GCAATG	2 cut(s)	183, 642
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	16, 1132
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	258, 333
BsiSI	CCGG	1 cut(s)	900
BslFI	GGGAC	2 cut(s)	376, 955
BslI	CCNNNNNNNGG	2 cut(s)	939, 1259
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	2 cut(s)	376, 955
BsmI	GAATGC	1 cut(s)	915
BsnI	GGCC	2 cut(s)	258, 333
Bsp120I	GGGCCC	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	890
Bsp143I	GATC	2 cut(s)	856, 1305
BspACI	CCGC	4 cut(s)	978, 1014, 1031, 1224
BspANI	GGCC	2 cut(s)	258, 333
BspLI	GGNNCC	4 cut(s)	333, 663, 770, 1251
BsrDI	GCAATG	2 cut(s)	183, 642
BsrGI	TGTACA	1 cut(s)	890
BssMI	GATC	2 cut(s)	856, 1305
Bst4CI	ACNGT	2 cut(s)	895, 1133
BstAUI	TGTACA	1 cut(s)	890
BstDEI	CTNAG	2 cut(s)	494, 1123
BstF5I	GGATG	2 cut(s)	356, 715
BstH2I	RGCGCY	2 cut(s)	842, 1077
BstHHI	GCGC	2 cut(s)	841, 1076
BstKTI	GATC	2 cut(s)	859, 1308
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	2 cut(s)	856, 1305
BstNSI	RCATGY	2 cut(s)	814, 1110
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	16, 1132
BstV2I	GAAGAC	2 cut(s)	195, 1390
BsuI	GTATCC	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	258, 333
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	356, 715
BtsIMutI	CAGTG	1 cut(s)	900
CaiI	CAGNNNCTG	1 cut(s)	971
CfoI	GCGC	2 cut(s)	841, 1076
Cfr13I	GGNCC	3 cut(s)	331, 332, 662
Csp6I	GTAC	6 cut(s)	106, 205, 891, 948, 954, 960
CviAII	CATG	8 cut(s)	210, 308, 748, 811, 912, 1107, 1265, 1274
CviQI	GTAC	6 cut(s)	106, 205, 891, 948, 954, 960
DdeI	CTNAG	2 cut(s)	494, 1123
DpnI	GATC	2 cut(s)	858, 1307
DpnII	GATC	2 cut(s)	856, 1305
EaeI	YGGCCR	1 cut(s)	256
EciI	GGCGGA	1 cut(s)	1046
Eco24I	GRGCYC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	662
Eco47III	AGCGCT	1 cut(s)	840
EcoO109I	RGGNCCY	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	617
EcoT22I	ATGCAT	2 cut(s)	430, 917
EcoT38I	GRGCYC	1 cut(s)	335
FaeI	CATG	8 cut(s)	213, 311, 751, 814, 915, 1110, 1268, 1277
FalI	AAGNNNNNCTT	6 cut(s)	213, 245, 349, 381, 487, 519
FaqI	GGGAC	2 cut(s)	376, 955
FatI	CATG	8 cut(s)	209, 307, 747, 810, 911, 1106, 1264, 1273
FauI	CCCGC	1 cut(s)	1007
Fnu4HI	GCNGC	2 cut(s)	5, 1146
FokI	GGATG	2 cut(s)	363, 702
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	2 cut(s)	5, 1146
FspBI	CTAG	6 cut(s)	413, 419, 507, 807, 951, 957
GlaI	GCGC	2 cut(s)	840, 1075
GluI	GCNGC	2 cut(s)	5, 1146
HaeII	RGCGCY	2 cut(s)	842, 1077
HaeIII	GGCC	2 cut(s)	258, 333
HapII	CCGG	1 cut(s)	900
HhaI	GCGC	2 cut(s)	841, 1076
Hin1II	CATG	8 cut(s)	213, 311, 751, 814, 915, 1110, 1268, 1277
Hin6I	GCGC	2 cut(s)	839, 1074
HinP1I	GCGC	2 cut(s)	839, 1074
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	117, 1415
HpaII	CCGG	1 cut(s)	900
HphI	GGTGA	3 cut(s)	19, 795, 1255
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	4 cut(s)	74, 489, 724, 973
Hpy188III	TCNNGA	5 cut(s)	89, 296, 369, 551, 996
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	4 cut(s)	322, 1021, 1042, 1240
HpyCH4III	ACNGT	2 cut(s)	895, 1133
HpyCH4IV	ACGT	1 cut(s)	192
HpyF3I	CTNAG	2 cut(s)	494, 1123
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	8 cut(s)	213, 311, 751, 814, 915, 1110, 1268, 1277
HspAI	GCGC	2 cut(s)	839, 1074
Kzo9I	GATC	2 cut(s)	856, 1305
Lsp1109I	GCAGC	2 cut(s)	16, 1132
LweI	GCATC	3 cut(s)	415, 814, 1026
MaeI	CTAG	6 cut(s)	413, 419, 507, 807, 951, 957
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	2 cut(s)	858, 1307
MboI	GATC	2 cut(s)	856, 1305
MboII	GAAGA	8 cut(s)	7, 28, 200, 851, 1149, 1303, 1331, 1395
MfeI	CAATTG	1 cut(s)	656
MhlI	GDGCHC	1 cut(s)	335
MlsI	TGGCCA	1 cut(s)	258
MluNI	TGGCCA	1 cut(s)	258
MlyI	GAGTC	1 cut(s)	1409
MmeI	TCCRAC	1 cut(s)	488
MnlI	CCTC	9 cut(s)	78, 393, 744, 780, 992, 1062, 1120, 1253, 1346
Mox20I	TGGCCA	1 cut(s)	258
Mph1103I	ATGCAT	2 cut(s)	430, 917
MroXI	GAANNNNTTC	1 cut(s)	732
MscI	TGGCCA	1 cut(s)	258
MseI	TTAA	4 cut(s)	456, 584, 1089, 1200
MslI	CAYNNNNRTG	1 cut(s)	868
Msp20I	TGGCCA	1 cut(s)	258
MspA1I	CMGCKG	1 cut(s)	1145
MspI	CCGG	1 cut(s)	900
MunI	CAATTG	1 cut(s)	656
Mva1269I	GAATGC	1 cut(s)	915
NdeII	GATC	2 cut(s)	856, 1305
NlaIII	CATG	8 cut(s)	213, 311, 751, 814, 915, 1110, 1268, 1277
NlaIV	GGNNCC	4 cut(s)	333, 663, 770, 1251
NsiI	ATGCAT	2 cut(s)	430, 917
NspI	RCATGY	2 cut(s)	814, 1110
PctI	GAATGC	1 cut(s)	915
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	6, 1147
PleI	GAGTC	1 cut(s)	1409
PpsI	GAGTC	1 cut(s)	1409
PsiI	TTATAA	1 cut(s)	690
PspN4I	GGNNCC	4 cut(s)	333, 663, 770, 1251
PspOMI	GGGCCC	1 cut(s)	331
PspPI	GGNCC	3 cut(s)	331, 332, 662
PstNI	CAGNNNCTG	1 cut(s)	971
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	6 cut(s)	107, 206, 892, 949, 955, 961
RsaNI	GTAC	6 cut(s)	106, 205, 891, 948, 954, 960
RseI	CAYNNNNRTG	1 cut(s)	868
SaqAI	TTAA	4 cut(s)	456, 584, 1089, 1200
SatI	GCNGC	2 cut(s)	5, 1146
Sau3AI	GATC	2 cut(s)	856, 1305
Sau96I	GGNCC	3 cut(s)	331, 332, 662
ScaI	AGTACT	4 cut(s)	206, 949, 955, 961
SchI	GAGTC	1 cut(s)	1409
SduI	GDGCHC	1 cut(s)	335
SfaNI	GCATC	3 cut(s)	415, 814, 1026
SfcI	CTRYAG	1 cut(s)	963
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	1 cut(s)	868
SpeI	ACTAGT	2 cut(s)	950, 956
SsiI	CCGC	4 cut(s)	978, 1014, 1031, 1224
SspMI	CTAG	6 cut(s)	413, 419, 507, 807, 951, 957
TaaI	ACNGT	2 cut(s)	895, 1133
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	53, 815
TaqII	GACCGA	1 cut(s)	947
TatI	WGTACW	6 cut(s)	105, 204, 890, 947, 953, 959
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	4 cut(s)	456, 584, 1089, 1200
Tru9I	TTAA	4 cut(s)	456, 584, 1089, 1200
TscAI	CASTG	1 cut(s)	900
TseI	GCWGC	2 cut(s)	4, 1145
TspDTI	ATGAA	9 cut(s)	7, 109, 165, 507, 528, 741, 900, 981, 1040
TspGWI	ACGGA	2 cut(s)	327, 897
TspRI	CASTG	1 cut(s)	900
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	8 cut(s)	283, 586, 617, 730, 781, 818, 987, 1285
XceI	RCATGY	2 cut(s)	814, 1110
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	6 cut(s)	413, 419, 507, 807, 951, 957
ZrmI	AGTACT	4 cut(s)	206, 949, 955, 961
Zsp2I	ATGCAT	2 cut(s)	430, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.