Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013054

Physical Location & Seq

Genomic Coordinates Reverse (-)

40249397 .. 40251010

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATGCTCTACTACCTGTTCATTTCCCTAACTCTTTTCGTCGCTTATGGCCACTCCAAGCCAGAGATTCATATTGGCTACAACCTCACTTTGGCAGTGCCTGTTGAGTACACCATGGGATTCATTGGCAGAGCTTTTCTAATGGATACCAATCTAACCATACCCAGTTTCAAAGCTGCATTGAGTGTTGAAGCTTTTAATGGGAAGTACTCATGCTCCTTTCAAGTCTTTCTTGGAAATGTGAAGGTATGGAATTCTGGCCATTACTCAAAGTTTTATACATCGAATGAATGCGTCCTTGAACTCACCAGTGATGGAGATTTAAGGCTGAAGGGTCCAAAAGACAGAGTGGGATGGAGAACTGGGACTTCTGGACAAGGTGTGGAGAGGTTACAGTTATTGAGGACAGGGAATCTAGTACTAGTTGATGGCTCGGACCGGATCAAATGGCAGAGTTTTAATTTTCCGACCGATGTGATGCTTTGGGGTCAGACACTTAGTGTGGCGTCACGCTTGACTTCATTTCCAAGCAATTCAAGTTCATACTACTCGATGGAAATTGAGCACACCAGGATTGCTCTCTACTTGAATTCCGATAAATCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 PAN_3

Protein Analysis

202

Amino Acids

22.76

Weight (kDa)

8.48

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	94 - 170	5.7e-12	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51710
fragaria_vesca	FvH4_6g10470
malus_domestica	MD04G1170300.v1.1 MD12G1184300.v1.1
prunus_persica	Prupe.4G286300_v2.0.a1 Prupe.6G289100_v2.0.a1
pyrus_communis	pycom12g17300
rosa_chinensis	RchiOBHm_Chr3g0461371
rosa_laevigata	RLG00000024937
rosa_multiflora	Rmu_sc0002677.1_g000023
rosa_roxburghii	Rroxscaffold_6G00418360 Rroxscaffold_6G00418660
rosa_rugosa	Rorug03G0049700
rosa_samantha	Rh3AG107800 Rh3BG111800 Rh3CG113600 Rh3DG113600
rosa_wichuraiana	Rw3G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	2 cut(s)	49, 259
AcsI	RAATTY	2 cut(s)	253, 589
AcuI	CTGAAG	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	506
AdeI	CACNNNGTG	1 cut(s)	500
AfaI	GTAC	3 cut(s)	110, 209, 420
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	6 cut(s)	172, 191, 224, 302, 537, 589
AhlI	ACTAGT	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	3 cut(s)	134, 176, 194
AluI	AGCT	3 cut(s)	134, 176, 194
Alw21I	GWGCWC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	449
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	2 cut(s)	49, 259
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	2 cut(s)	253, 589
AspS9I	GGNCC	2 cut(s)	335, 436
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	335, 436
BalI	TGGCCA	2 cut(s)	51, 261
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	4 cut(s)	308, 348, 422, 547
BciT130I	CCWGG	1 cut(s)	571
BciVI	GTATCC	1 cut(s)	139
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	2 cut(s)	416, 422
BfuI	GTATCC	1 cut(s)	139
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BmcAI	AGTACT	2 cut(s)	209, 420
Bme1390I	CCNGG	1 cut(s)	571
Bme18I	GGWCC	2 cut(s)	335, 436
BmgT120I	GGNCC	2 cut(s)	335, 436
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	571
BmrI	ACTGGG	2 cut(s)	159, 372
BmsI	GCATC	1 cut(s)	468
BmuI	ACTGGG	2 cut(s)	159, 372
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	3 cut(s)	165, 309, 367
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	359
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseNI	ACTGG	3 cut(s)	165, 309, 367
BseXI	GCAGC	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	51, 261
BsiEI	CGRYCG	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	51, 261
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp143I	GATC	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	114
BspANI	GGCC	2 cut(s)	51, 261
BspLI	GGNNCC	1 cut(s)	336
BspPI	GGATC	1 cut(s)	449
BsrI	ACTGG	3 cut(s)	165, 309, 367
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	441
BssNI	GRCGYC	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	396
BstACI	GRCGYC	1 cut(s)	506
BstDEI	CTNAG	1 cut(s)	497
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	1 cut(s)	444
BstMBI	GATC	1 cut(s)	441
BstMCI	CGRYCG	1 cut(s)	471
BstNI	CCWGG	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	569
BstV1I	GCAGC	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	51, 261
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	359
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	2 cut(s)	102, 316
CaiI	CAGNNNCTG	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	335, 436
CpoI	CGGWCCG	1 cut(s)	436
CseI	GACGC	2 cut(s)	283, 495
Csp6I	GTAC	3 cut(s)	109, 208, 419
CspI	CGGWCCG	1 cut(s)	436
CviAII	CATG	2 cut(s)	115, 213
CviJI	RGCY	9 cut(s)	51, 61, 78, 134, 176, 194, 261, 328, 432
CviKI_1	RGCY	9 cut(s)	51, 61, 78, 134, 176, 194, 261, 328, 432
CviQI	GTAC	3 cut(s)	109, 208, 419
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	1 cut(s)	443
DpnII	GATC	1 cut(s)	441
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	2 cut(s)	49, 259
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	335, 436
Eco57I	CTGAAG	1 cut(s)	350
EcoRI	GAATTC	2 cut(s)	253, 589
EcoRII	CCWGG	1 cut(s)	569
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	118, 216
FaiI	YATR	8 cut(s)	48, 72, 116, 161, 214, 250, 279, 544
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	2 cut(s)	114, 212
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	2 cut(s)	416, 422
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	51, 261
HapII	CCGG	1 cut(s)	439
HgaI	GACGC	2 cut(s)	283, 495
Hin1I	GRCGYC	1 cut(s)	506
Hin1II	CATG	2 cut(s)	118, 216
HindIII	AAGCTT	1 cut(s)	192
HinfI	GANTC	3 cut(s)	67, 120, 412
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	5 cut(s)	436, 468, 492, 595, 608
Hpy188III	TCNNGA	1 cut(s)	372
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	238, 325
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4V	TGCA	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	506
Hsp92II	CATG	2 cut(s)	118, 216
Kzo9I	GATC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	468
MaeI	CTAG	2 cut(s)	416, 422
MaeIII	GTNAC	2 cut(s)	390, 507
MalI	GATC	1 cut(s)	443
MboI	GATC	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	567
MlsI	TGGCCA	2 cut(s)	51, 261
MluCI	AATT	5 cut(s)	253, 460, 532, 558, 589
MluNI	TGGCCA	2 cut(s)	51, 261
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	3 cut(s)	95, 381, 396
Mox20I	TGGCCA	2 cut(s)	51, 261
MscI	TGGCCA	2 cut(s)	51, 261
MseI	TTAA	3 cut(s)	198, 323, 459
Msp20I	TGGCCA	2 cut(s)	51, 261
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	571
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	441
NlaIII	CATG	2 cut(s)	118, 216
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	507
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	67, 120, 412
PkrI	GCNGC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	335, 436
PstNI	CAGNNNCTG	1 cut(s)	101
RsaI	GTAC	3 cut(s)	110, 209, 420
RsaNI	GTAC	3 cut(s)	109, 208, 419
Rsr2I	CGGWCCG	1 cut(s)	436
RsrII	CGGWCCG	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	198, 323, 459
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	441
Sau96I	GGNCC	2 cut(s)	335, 436
ScaI	AGTACT	2 cut(s)	209, 420
ScrFI	CCNGG	1 cut(s)	571
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	8 cut(s)	18, 87, 136, 178, 196, 249, 382, 392
SfaNI	GCATC	1 cut(s)	468
SinI	GGWCC	2 cut(s)	335, 436
SpeI	ACTAGT	1 cut(s)	421
Sse9I	AATT	5 cut(s)	253, 460, 532, 558, 589
SspMI	CTAG	2 cut(s)	416, 422
StyD4I	CCNGG	1 cut(s)	569
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	396
TaqI	TCGA	2 cut(s)	284, 551
TaqII	GACCGA	1 cut(s)	485
TasI	AATT	5 cut(s)	253, 460, 532, 558, 589
TatI	WGTACW	3 cut(s)	108, 207, 418
TfiI	GAWTC	3 cut(s)	67, 120, 412
Tru1I	TTAA	3 cut(s)	198, 323, 459
Tru9I	TTAA	3 cut(s)	198, 323, 459
TscAI	CASTG	2 cut(s)	102, 316
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	6 cut(s)	10, 59, 112, 303, 510, 531
TspRI	CASTG	2 cut(s)	102, 316
VpaK11BI	GGWCC	2 cut(s)	335, 436
XapI	RAATTY	2 cut(s)	253, 589
XspI	CTAG	2 cut(s)	416, 422
ZrmI	AGTACT	2 cut(s)	209, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.