Rw3G009200

G-type lectin S-receptor-like serine threonine-protein kinase SD2-5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013054
Physical Location & Seq
Forward (+)
8767752 .. 8769469
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009200.1

Sequence Viewer

Length: 1398 bp
ATGATGCTCTACTACCTGTTCATTTCCCTAACTCTTTTCGTCGCTCATGGCCACTCCAAGCCAGAGATTCATATTGGCTACAACCTCACTTTGGCAGTGCCTGTTGAGTACACCATGGGATTCATTGGCAGAGCTTTTCTAATGGATACCAATCTAACCATACCCAGTTTCAAAGCTGCATTGAGTGTTGAAGCTTTTAATGGGAAGTACTCATGCTCCTTTCAAGTCTTTCTTGGAAATGTGAAGGTATGGAATTCTGGCCACTACTCAAAGTTTTATACATCGAATGAATGCGTCCTTGAACTCACCAGTGATGGAGATTTAAGGCTGAAGGGTCCAAAAGACAGAGTGGGATGGAGAACTGGGACTTCTGGACAAGGTGTGGAGAGGTTACAGTTACTGAGGACAGGGAATCTAGTACTAGTTGATGGCTTGGACCGGATCAAATGGCAGAGTTTTAATTTTCCGACCGATGTGATGCTTTGGGGTCAGACACTTAGTGTGGCGTCACGCTTGACTTCATTTCCAAGCAATTCAAGTTCATACTACTCGATGGAAATTGAGCACACCAGGATTGCTCTCTACTTGAATTTCGGTAAGCAAAACTATTCGTATTGGGAATTTAAGCCTTCCAAGAACAGAAATATTGCTTTTATTCAATTGGGTCTACAAGGATTAGAGTTATACAGTGATAAAGGTAAGAAAATCGCGCAGATAAATCCATATGAGGAAACAGTTCAGCCCCTGAGATTTTTGGCTTTGGGGAACCAAACAGGGAATTTGAGGCTTTATTTTTACTCACCCAGCTTGGAAAAATTTGATGCTTCTTTTCAAGCACTCAACACAACATGTGATCTTCCATTGGCTTGCAAGCCTTATGGCATTTGTACCTTGTCTGGTGCTTGTTCATGCATTCAAGTTTTGACAACGGAAAATGAGAGTAGTACTAGTACTAGTACCAGTTCTAATTGCATTGAAGGAGTTTCATCAGATGGGTTTTGTGGAAGAGGTAAGGCAGAAATGCTTGAACTGGAGAGTGTCACTAGTGTGTTAAGGGGTGCTCCTAAAATAGTTAATGTGAGCAAAGAAGAATGTGGTAAATTGTGCTTGGAAGATTGTAAGTGTGCATCTACATTACATAACTCTGAAGAATGCTTTCTTTATGGAATGGTGATTGGGGTTAAACAGGTTGAAAGGGAAAGTGGGTTGAGTTACATGGTTAAGGTTCCAAAGGGATCAAGTCATGGGGGTCATGGAAAGTCTAATGTGAAAAAATGGGTGTTGATATTGGTAGGAGTTGTTGATGGGGTGATAATTCTTGCTCTCTTTGGAGGTCTTGGCTACTACTTGATTAGAAAAAGAAGAAGACATTCTTTGCCTAATGGCCATAACAATTGA

Protein Analysis

465

Amino Acids

51.61

Weight (kDa)

8.7

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 94 - 170 1.5e-10 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51710
fragaria_vesca FvH4_6g10470
malus_domestica MD04G1170300.v1.1 MD12G1184300.v1.1
prunus_persica Prupe.4G286300_v2.0.a1 Prupe.6G289100_v2.0.a1
pyrus_communis pycom12g17300
rosa_chinensis RchiOBHm_Chr3g0461371
rosa_laevigata RLG00000024937
rosa_multiflora Rmu_sc0002677.1_g000023
rosa_roxburghii Rroxscaffold_6G00418360 Rroxscaffold_6G00418660
rosa_rugosa Rorug03G0049700
rosa_samantha Rh3AG107800 Rh3BG111800 Rh3CG113600 Rh3DG113600
rosa_wichuraiana Rw3G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 667
AccII CGCG 1 cut(s) 710
AclWI GGATC 2 cut(s) 449, 1243
AcoI YGGCCR 3 cut(s) 49, 259, 1384
AcsI RAATTY 5 cut(s) 253, 589, 620, 778, 815
AcuI CTGAAG 2 cut(s) 350, 1167
AcyI GRCGYC 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 7 cut(s) 110, 209, 420, 889, 946, 952, 958
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 848
AhlI ACTAGT 4 cut(s) 421, 947, 953, 1043
AjnI CCWGG 1 cut(s) 569
AleI CACNNNNGTG 1 cut(s) 1046
AluBI AGCT 4 cut(s) 134, 176, 194, 807
AluI AGCT 4 cut(s) 134, 176, 194, 807
Alw21I GWGCWC 2 cut(s) 567, 1063
AlwI GGATC 2 cut(s) 449, 1243
AlwNI CAGNNNCTG 3 cut(s) 101, 400, 745
AoxI GGCC 3 cut(s) 49, 259, 1384
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 5 cut(s) 253, 589, 620, 778, 815
Asp700I GAANNNNTTC 3 cut(s) 735, 1155, 1369
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 335, 436
AsuHPI GGTGA 4 cut(s) 298, 792, 1183, 1321
AvaII GGWCC 2 cut(s) 335, 436
BalI TGGCCA 3 cut(s) 51, 261, 1386
BbsI GAAGAC 1 cut(s) 1372
Bbv12I GWGCWC 2 cut(s) 567, 1063
BbvI GCAGC 1 cut(s) 163
BccI CCATC 6 cut(s) 308, 348, 422, 547, 986, 1298
BciT130I CCWGG 1 cut(s) 571
BciVI GTATCC 1 cut(s) 139
BcuI ACTAGT 4 cut(s) 421, 947, 953, 1043
BfaI CTAG 5 cut(s) 416, 422, 948, 954, 1044
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmcAI AGTACT 4 cut(s) 209, 420, 946, 952
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 335, 436
BmgT120I GGNCC 2 cut(s) 335, 436
BmiI GGNNCC 3 cut(s) 336, 767, 1227
BmrFI CCNGG 1 cut(s) 571
BmrI ACTGGG 2 cut(s) 159, 372
BmsI GCATC 3 cut(s) 468, 811, 1136
BmuI ACTGGG 2 cut(s) 159, 372
BpiI GAAGAC 1 cut(s) 1372
BpmI CTGGAG 1 cut(s) 1052
BsaBI GATNNNNATC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 438
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 5 cut(s) 165, 309, 367, 960, 1035
Bse8I GATNNNNATC 1 cut(s) 150
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 392, 737
BseNI ACTGG 5 cut(s) 165, 309, 367, 960, 1035
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 803
Bsh1236I CGCG 1 cut(s) 710
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 3 cut(s) 51, 261, 1386
BsiEI CGRYCG 1 cut(s) 471
BsiHKAI GWGCWC 2 cut(s) 567, 1063
BsiSI CCGG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 3 cut(s) 296, 912, 1157
BsnI GGCC 3 cut(s) 51, 261, 1386
Bsp1286I GDGCHC 2 cut(s) 567, 1063
Bsp143I GATC 3 cut(s) 441, 853, 1235
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 3 cut(s) 51, 261, 1386
BspCNI CTCAG 2 cut(s) 393, 738
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 3 cut(s) 336, 767, 1227
BspPI GGATC 2 cut(s) 449, 1243
BsrI ACTGG 5 cut(s) 165, 309, 367, 960, 1035
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 3 cut(s) 441, 853, 1235
BssNI GRCGYC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 3 cut(s) 396, 689, 736
Bst6I CTCTTC 1 cut(s) 1000
BstACI GRCGYC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 868, 872
BstDEI CTNAG 3 cut(s) 401, 497, 746
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 3 cut(s) 444, 856, 1238
BstMBI GATC 3 cut(s) 441, 853, 1235
BstMCI CGRYCG 1 cut(s) 471
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 569
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 1372
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 51, 261, 1386
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 102, 316, 694
Cac8I GCNNGC 2 cut(s) 868, 872
CaiI CAGNNNCTG 3 cut(s) 101, 400, 745
CfoI GCGC 1 cut(s) 712
Cfr13I GGNCC 2 cut(s) 335, 436
CseI GACGC 2 cut(s) 283, 495
Csp6I GTAC 7 cut(s) 109, 208, 419, 888, 945, 951, 957
CviAII CATG 8 cut(s) 47, 115, 213, 849, 909, 1216, 1244, 1253
CviQI GTAC 7 cut(s) 109, 208, 419, 888, 945, 951, 957
DdeI CTNAG 3 cut(s) 401, 497, 746
DpnI GATC 3 cut(s) 443, 855, 1237
DpnII GATC 3 cut(s) 441, 853, 1235
DraIII CACNNNGTG 1 cut(s) 500
EaeI YGGCCR 3 cut(s) 49, 259, 1384
Eam1104I CTCTTC 1 cut(s) 1000
EarI CTCTTC 1 cut(s) 1000
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 335, 436
Eco57I CTGAAG 2 cut(s) 350, 1167
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 8 cut(s) 50, 118, 216, 852, 912, 1219, 1247, 1256
FalI AAGNNNNNCTT 4 cut(s) 216, 248, 1357, 1389
FaqI GGGAC 1 cut(s) 379
FatI CATG 8 cut(s) 46, 114, 212, 848, 908, 1215, 1243, 1252
FauNDI CATATG 1 cut(s) 724
FblI GTMKAC 1 cut(s) 667
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 5 cut(s) 416, 422, 948, 954, 1044
GlaI GCGC 1 cut(s) 711
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 807
GsuI CTGGAG 1 cut(s) 1052
HaeIII GGCC 3 cut(s) 51, 261, 1386
HapII CCGG 1 cut(s) 439
HgaI GACGC 2 cut(s) 283, 495
HhaI GCGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 8 cut(s) 50, 118, 216, 852, 912, 1219, 1247, 1256
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 67, 120, 412
HpaII CCGG 1 cut(s) 439
HphI GGTGA 4 cut(s) 298, 792, 1183, 1321
Hpy166II GTNNAC 2 cut(s) 111, 668
Hpy188I TCNGA 4 cut(s) 468, 492, 991, 1147
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 2 cut(s) 111, 668
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 238, 325, 639, 971
HpyCH4III ACNGT 3 cut(s) 396, 689, 736
HpyCH4V TGCA 5 cut(s) 179, 870, 912, 972, 1127
HpyF3I CTNAG 3 cut(s) 401, 497, 746
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 8 cut(s) 50, 118, 216, 852, 912, 1219, 1247, 1256
HspAI GCGC 1 cut(s) 710
Kzo9I GATC 3 cut(s) 441, 853, 1235
LmnI GCTCC 2 cut(s) 221, 1066
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 3 cut(s) 468, 811, 1136
MaeI CTAG 5 cut(s) 416, 422, 948, 954, 1044
MaeIII GTNAC 5 cut(s) 390, 396, 507, 1039, 1211
MalI GATC 3 cut(s) 443, 855, 1237
MboI GATC 3 cut(s) 441, 853, 1235
MboII GAAGA 7 cut(s) 848, 1017, 1100, 1124, 1160, 1374, 1377
MfeI CAATTG 2 cut(s) 659, 1393
MhlI GDGCHC 2 cut(s) 567, 1063
MlsI TGGCCA 3 cut(s) 51, 261, 1386
MluNI TGGCCA 3 cut(s) 51, 261, 1386
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 7 cut(s) 95, 381, 396, 721, 777, 1001, 1325
Mox20I TGGCCA 3 cut(s) 51, 261, 1386
Mph1103I ATGCAT 1 cut(s) 914
MroXI GAANNNNTTC 3 cut(s) 735, 1155, 1369
MscI TGGCCA 3 cut(s) 51, 261, 1386
MseI TTAA 8 cut(s) 198, 323, 459, 624, 1052, 1074, 1182, 1221
MslI CAYNNNNRTG 1 cut(s) 1046
Msp20I TGGCCA 3 cut(s) 51, 261, 1386
MspI CCGG 1 cut(s) 439
MspR9I CCNGG 1 cut(s) 571
MunI CAATTG 2 cut(s) 659, 1393
Mva1269I GAATGC 3 cut(s) 296, 912, 1157
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 710
NcoI CCATGG 1 cut(s) 114
NdeI CATATG 1 cut(s) 724
NdeII GATC 3 cut(s) 441, 853, 1235
NlaIII CATG 8 cut(s) 50, 118, 216, 852, 912, 1219, 1247, 1256
NlaIV GGNNCC 3 cut(s) 336, 767, 1227
NmuCI GTSAC 2 cut(s) 507, 1039
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 1046
PciI ACATGT 1 cut(s) 848
PctI GAATGC 3 cut(s) 296, 912, 1157
PdmI GAANNNNTTC 3 cut(s) 735, 1155, 1369
PfeI GAWTC 3 cut(s) 67, 120, 412
PkrI GCNGC 1 cut(s) 178
PscI ACATGT 1 cut(s) 848
Psp6I CCWGG 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 336, 767, 1227
PspPI GGNCC 2 cut(s) 335, 436
PstNI CAGNNNCTG 3 cut(s) 101, 400, 745
RsaI GTAC 7 cut(s) 110, 209, 420, 889, 946, 952, 958
RsaNI GTAC 7 cut(s) 109, 208, 419, 888, 945, 951, 957
RseI CAYNNNNRTG 1 cut(s) 1046
SaqAI TTAA 8 cut(s) 198, 323, 459, 624, 1052, 1074, 1182, 1221
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 3 cut(s) 441, 853, 1235
Sau96I GGNCC 2 cut(s) 335, 436
ScaI AGTACT 4 cut(s) 209, 420, 946, 952
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 2 cut(s) 567, 1063
SfaNI GCATC 3 cut(s) 468, 811, 1136
SinI GGWCC 2 cut(s) 335, 436
SmiMI CAYNNNNRTG 1 cut(s) 1046
SpeI ACTAGT 4 cut(s) 421, 947, 953, 1043
SspI AATATT 1 cut(s) 646
SspMI CTAG 5 cut(s) 416, 422, 948, 954, 1044
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 396, 689, 736
TaqI TCGA 2 cut(s) 284, 551
TaqII GACCGA 1 cut(s) 485
TatI WGTACW 5 cut(s) 108, 207, 418, 944, 950
TfiI GAWTC 3 cut(s) 67, 120, 412
Tru1I TTAA 8 cut(s) 198, 323, 459, 624, 1052, 1074, 1182, 1221
Tru9I TTAA 8 cut(s) 198, 323, 459, 624, 1052, 1074, 1182, 1221
TscAI CASTG 3 cut(s) 102, 316, 694
TseFI GTSAC 2 cut(s) 507, 1039
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 507, 1039
TspDTI ATGAA 8 cut(s) 10, 59, 112, 303, 510, 531, 897, 975
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 3 cut(s) 102, 316, 694
VpaK11BI GGWCC 2 cut(s) 335, 436
XapI RAATTY 5 cut(s) 253, 589, 620, 778, 815
XceI RCATGY 1 cut(s) 852
XmiI GTMKAC 1 cut(s) 667
XmnI GAANNNNTTC 3 cut(s) 735, 1155, 1369
XspI CTAG 5 cut(s) 416, 422, 948, 954, 1044
ZrmI AGTACT 4 cut(s) 209, 420, 946, 952
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.