Rroxscaffold_6G00418360

G-type lectin S-receptor-like serine threonine-protein kinase SD2-5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013054
Physical Location & Seq
Reverse (-)
39884127 .. 39885796
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00418360.1

Sequence Viewer

Length: 1221 bp
ATGATGCTCTACTACCTGTTCATTTCCCTAACTCTTTTCGTCGCTTATGGCCACTCCAAGCCAGAGATTCATATCGGCTACAACCTCACTTTGGCAGTGCCTGTTGAGTACACCATGGGATTCATTGGCAGAGCTTTTCTAATGGATACCAATCTAACCATACCCAGTTTCAAAGCTGCATTGAGTGTTGAAGCTTTTAATGGGAAGTACTCATGCTCCTTTCAAGTCTTTCTTGGAAATGTGAAGGTATGGAATTCTGGCCATTACTCAAAGTTTTATACATCGAATGAATGCGTCCTTGAACTCACCAGTGATGGAGATTTAAGGCTGAAGGGTCCAAAAGACAGAGTGGGATGGAGAACTGGGACTTCTGGACAAGGTGTGGAGAGGTTACAGTTATTGAGGACAGGGAATCTAGTACTAGTTGATGGCTCGGACCGGATCAAATGGCAGAGTTTTAATTTTCCGACCGATGTGATGCTTTGGGGTCAGACACTTAGTGTGGCGTCACGCTTGACTTCATTTCCAAGCAATTCAAGTTCATACTACTCGATGGAAATTGAGCACACCAGGATTGCTCTCTACTTGAATTCCGGTAAGCAAAACTATTCGTATTGGGAATTTAAGCCTTCCAAGAACAGAAATATTGCTTTTATTAAATTGGGTTTACAAGGATTAGAGTTACACAGTGATAAAGGTAAGAAAATCGCGCAGATAAATCCATCTGAGGAAACAATTCAGCCCCTGAGATTTTTGGCTTTGGGGAACCAAACAGGGAATTTGAGGCTTTATTTTTACTCACCCAGCTTGGAAAAATTTGATGCTTCTTTTCAAGCACTCAATACAACATGTGATCTTCCATTGGCTTGCAAGCCTTATGGCATTTGTACCTTGTCTGGTGCTTGTTCATGCATTCAAGTTTTGACAACGGAAAATGAGAGTAGTACTACTAGTACCACTTCTAATTGCATTGAAGGAGTTTCATCAGATGGGTTTTGTGGAAGAGGTAAGGCAGAAATGCTTGAATTGGAGAGTGTCACTAGTGTGTTAAGGGGTGCTCCTAGAATAGTTAATGTGAGCAAAGAAGAATGTGGTAAATTGTGCTTGGAAGATTGTAAGTGTGCATCTGCATTACATAACTCTGAAGAATGCTTTCTCTATGGAATGGTGATTGGGGTTAAACAGGTTGAAAGGGAAAGTGGGTTGAGTTACATGGGTTAA

Protein Analysis

406

Amino Acids

45.04

Weight (kDa)

6.97

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 94 - 170 2.2e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51710
fragaria_vesca FvH4_6g10470
malus_domestica MD04G1170300.v1.1 MD12G1184300.v1.1
prunus_persica Prupe.4G286300_v2.0.a1 Prupe.6G289100_v2.0.a1
pyrus_communis pycom12g17300
rosa_chinensis RchiOBHm_Chr3g0461371
rosa_laevigata RLG00000024937
rosa_multiflora Rmu_sc0002677.1_g000023
rosa_roxburghii Rroxscaffold_6G00418360 Rroxscaffold_6G00418660
rosa_rugosa Rorug03G0049700
rosa_samantha Rh3AG107800 Rh3BG111800 Rh3CG113600 Rh3DG113600
rosa_wichuraiana Rw3G009200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 710
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 2 cut(s) 49, 259
AcsI RAATTY 5 cut(s) 253, 589, 620, 778, 815
AcuI CTGAAG 2 cut(s) 350, 1164
AcyI GRCGYC 1 cut(s) 506
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 6 cut(s) 110, 209, 420, 889, 946, 955
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 848
AhlI ACTAGT 3 cut(s) 421, 950, 1040
AjnI CCWGG 1 cut(s) 569
AleI CACNNNNGTG 1 cut(s) 1043
AluBI AGCT 4 cut(s) 134, 176, 194, 807
AluI AGCT 4 cut(s) 134, 176, 194, 807
Alw21I GWGCWC 2 cut(s) 567, 1060
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 2 cut(s) 101, 745
AoxI GGCC 2 cut(s) 49, 259
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 5 cut(s) 253, 589, 620, 778, 815
Asp700I GAANNNNTTC 2 cut(s) 735, 1152
AspLEI GCGC 1 cut(s) 712
AspS9I GGNCC 2 cut(s) 335, 436
AsuHPI GGTGA 3 cut(s) 298, 792, 1180
AvaII GGWCC 2 cut(s) 335, 436
BalI TGGCCA 2 cut(s) 51, 261
Bbv12I GWGCWC 2 cut(s) 567, 1060
BbvI GCAGC 1 cut(s) 163
BccI CCATC 6 cut(s) 308, 348, 422, 547, 730, 983
BciT130I CCWGG 1 cut(s) 571
BciVI GTATCC 1 cut(s) 139
BcuI ACTAGT 3 cut(s) 421, 950, 1040
BfaI CTAG 5 cut(s) 416, 422, 951, 1041, 1062
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 177
BlsI GCNGC 1 cut(s) 178
BmcAI AGTACT 3 cut(s) 209, 420, 946
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 335, 436
BmgT120I GGNCC 2 cut(s) 335, 436
BmiI GGNNCC 2 cut(s) 336, 767
BmrFI CCNGG 1 cut(s) 571
BmrI ACTGGG 2 cut(s) 159, 372
BmsI GCATC 3 cut(s) 468, 811, 1133
BmuI ACTGGG 2 cut(s) 159, 372
BsaBI GATNNNNATC 2 cut(s) 71, 150
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 2 cut(s) 438, 593
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 165, 309, 367
Bse8I GATNNNNATC 2 cut(s) 71, 150
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 359
BseJI GATNNNNATC 2 cut(s) 71, 150
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 717, 737
BseNI ACTGG 3 cut(s) 165, 309, 367
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 803
Bsh1236I CGCG 1 cut(s) 710
Bsh1285I CGRYCG 1 cut(s) 471
BshFI GGCC 2 cut(s) 51, 261
BsiEI CGRYCG 1 cut(s) 471
BsiHKAI GWGCWC 2 cut(s) 567, 1060
BsiSI CCGG 2 cut(s) 439, 594
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 91
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 3 cut(s) 296, 912, 1154
BsnI GGCC 2 cut(s) 51, 261
Bsp1286I GDGCHC 2 cut(s) 567, 1060
Bsp143I GATC 2 cut(s) 441, 853
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 2 cut(s) 51, 261
BspCNI CTCAG 2 cut(s) 718, 738
BspFNI CGCG 1 cut(s) 710
BspLI GGNNCC 2 cut(s) 336, 767
BspPI GGATC 1 cut(s) 449
BsrI ACTGG 3 cut(s) 165, 309, 367
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 441, 853
BssNI GRCGYC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 2 cut(s) 396, 689
Bst6I CTCTTC 1 cut(s) 997
BstACI GRCGYC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 868, 872
BstDEI CTNAG 3 cut(s) 497, 726, 746
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 712
BstKTI GATC 2 cut(s) 444, 856
BstMBI GATC 2 cut(s) 441, 853
BstMCI CGRYCG 1 cut(s) 471
BstNI CCWGG 1 cut(s) 571
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 569
BstUI CGCG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 163
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 51, 261
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 3 cut(s) 102, 316, 694
Cac8I GCNNGC 2 cut(s) 868, 872
CaiI CAGNNNCTG 2 cut(s) 101, 745
CfoI GCGC 1 cut(s) 712
Cfr13I GGNCC 2 cut(s) 335, 436
CpoI CGGWCCG 1 cut(s) 436
CseI GACGC 2 cut(s) 283, 495
Csp6I GTAC 6 cut(s) 109, 208, 419, 888, 945, 954
CspI CGGWCCG 1 cut(s) 436
CviAII CATG 5 cut(s) 115, 213, 849, 909, 1213
CviQI GTAC 6 cut(s) 109, 208, 419, 888, 945, 954
DdeI CTNAG 3 cut(s) 497, 726, 746
DpnI GATC 2 cut(s) 443, 855
DpnII GATC 2 cut(s) 441, 853
DraIII CACNNNGTG 1 cut(s) 500
EaeI YGGCCR 2 cut(s) 49, 259
Eam1104I CTCTTC 1 cut(s) 997
EarI CTCTTC 1 cut(s) 997
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 335, 436
Eco57I CTGAAG 2 cut(s) 350, 1164
EcoRI GAATTC 2 cut(s) 253, 589
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 118, 216, 852, 912, 1216
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 379
FatI CATG 5 cut(s) 114, 212, 848, 908, 1212
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 1 cut(s) 366
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 5 cut(s) 416, 422, 951, 1041, 1062
GlaI GCGC 1 cut(s) 711
GluI GCNGC 1 cut(s) 177
GsaI CCCAGC 1 cut(s) 807
HaeIII GGCC 2 cut(s) 51, 261
HapII CCGG 2 cut(s) 439, 594
HgaI GACGC 2 cut(s) 283, 495
HhaI GCGC 1 cut(s) 712
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 5 cut(s) 118, 216, 852, 912, 1216
Hin6I GCGC 1 cut(s) 710
HinP1I GCGC 1 cut(s) 710
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 3 cut(s) 67, 120, 412
HpaII CCGG 2 cut(s) 439, 594
HphI GGTGA 3 cut(s) 298, 792, 1180
Hpy166II GTNNAC 2 cut(s) 111, 668
Hpy188I TCNGA 6 cut(s) 436, 468, 492, 727, 988, 1144
Hpy188III TCNNGA 1 cut(s) 372
Hpy8I GTNNAC 2 cut(s) 111, 668
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 238, 325, 639, 968
HpyCH4III ACNGT 2 cut(s) 396, 689
HpyCH4V TGCA 6 cut(s) 179, 870, 912, 969, 1124, 1130
HpyF3I CTNAG 3 cut(s) 497, 726, 746
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 5 cut(s) 118, 216, 852, 912, 1216
HspAI GCGC 1 cut(s) 710
Kzo9I GATC 2 cut(s) 441, 853
LmnI GCTCC 2 cut(s) 221, 1063
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 3 cut(s) 468, 811, 1133
MaeI CTAG 5 cut(s) 416, 422, 951, 1041, 1062
MaeIII GTNAC 5 cut(s) 390, 507, 681, 1036, 1208
MalI GATC 2 cut(s) 443, 855
MboI GATC 2 cut(s) 441, 853
MboII GAAGA 5 cut(s) 848, 1014, 1097, 1121, 1157
MhlI GDGCHC 2 cut(s) 567, 1060
MlsI TGGCCA 2 cut(s) 51, 261
MluNI TGGCCA 2 cut(s) 51, 261
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 6 cut(s) 95, 381, 396, 721, 777, 998
Mox20I TGGCCA 2 cut(s) 51, 261
Mph1103I ATGCAT 1 cut(s) 914
MroXI GAANNNNTTC 2 cut(s) 735, 1152
MscI TGGCCA 2 cut(s) 51, 261
MseI TTAA 9 cut(s) 198, 323, 459, 624, 657, 1049, 1071, 1179, 1219
MslI CAYNNNNRTG 1 cut(s) 1043
Msp20I TGGCCA 2 cut(s) 51, 261
MspI CCGG 2 cut(s) 439, 594
MspR9I CCNGG 1 cut(s) 571
Mva1269I GAATGC 3 cut(s) 296, 912, 1154
MvaI CCWGG 1 cut(s) 571
MvnI CGCG 1 cut(s) 710
NcoI CCATGG 1 cut(s) 114
NdeII GATC 2 cut(s) 441, 853
NlaIII CATG 5 cut(s) 118, 216, 852, 912, 1216
NlaIV GGNNCC 2 cut(s) 336, 767
NmuCI GTSAC 2 cut(s) 507, 1036
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 1043
PciI ACATGT 1 cut(s) 848
PctI GAATGC 3 cut(s) 296, 912, 1154
PdmI GAANNNNTTC 2 cut(s) 735, 1152
PfeI GAWTC 3 cut(s) 67, 120, 412
PkrI GCNGC 1 cut(s) 178
PscI ACATGT 1 cut(s) 848
Psp6I CCWGG 1 cut(s) 569
PspFI CCCAGC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 569
PspN4I GGNNCC 2 cut(s) 336, 767
PspPI GGNCC 2 cut(s) 335, 436
PstNI CAGNNNCTG 2 cut(s) 101, 745
RsaI GTAC 6 cut(s) 110, 209, 420, 889, 946, 955
RsaNI GTAC 6 cut(s) 109, 208, 419, 888, 945, 954
RseI CAYNNNNRTG 1 cut(s) 1043
Rsr2I CGGWCCG 1 cut(s) 436
RsrII CGGWCCG 1 cut(s) 436
SaqAI TTAA 9 cut(s) 198, 323, 459, 624, 657, 1049, 1071, 1179, 1219
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 441, 853
Sau96I GGNCC 2 cut(s) 335, 436
ScaI AGTACT 3 cut(s) 209, 420, 946
ScrFI CCNGG 1 cut(s) 571
SduI GDGCHC 2 cut(s) 567, 1060
SfaNI GCATC 3 cut(s) 468, 811, 1133
SinI GGWCC 2 cut(s) 335, 436
SmiMI CAYNNNNRTG 1 cut(s) 1043
SpeI ACTAGT 3 cut(s) 421, 950, 1040
SspI AATATT 1 cut(s) 646
SspMI CTAG 5 cut(s) 416, 422, 951, 1041, 1062
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 396, 689
TaqI TCGA 2 cut(s) 284, 551
TaqII GACCGA 1 cut(s) 485
TatI WGTACW 4 cut(s) 108, 207, 418, 944
TfiI GAWTC 3 cut(s) 67, 120, 412
Tru1I TTAA 9 cut(s) 198, 323, 459, 624, 657, 1049, 1071, 1179, 1219
Tru9I TTAA 9 cut(s) 198, 323, 459, 624, 657, 1049, 1071, 1179, 1219
TscAI CASTG 3 cut(s) 102, 316, 694
TseFI GTSAC 2 cut(s) 507, 1036
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 2 cut(s) 507, 1036
TspDTI ATGAA 8 cut(s) 10, 59, 112, 303, 510, 531, 897, 972
TspGWI ACGGA 1 cut(s) 944
TspRI CASTG 3 cut(s) 102, 316, 694
VpaK11BI GGWCC 2 cut(s) 335, 436
XapI RAATTY 5 cut(s) 253, 589, 620, 778, 815
XceI RCATGY 1 cut(s) 852
XmnI GAANNNNTTC 2 cut(s) 735, 1152
XspI CTAG 5 cut(s) 416, 422, 951, 1041, 1062
ZrmI AGTACT 3 cut(s) 209, 420, 946
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.