FvH4_6g11500

Vitamin B6 photo-protection and homoeostasis

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
6911521 .. 6915574
4054 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11500.t1

Sequence Viewer

Length: 1470 bp
ATGCCTTGTTGCGCTCTACAGCTATCCCTCCCCATTTATTCTTCTAGAAACATTCCCAATTTCAGAGCTTGCCACTCTCGAATCACGTGCTGCTCCTCCTCTTCTTCTCAGTCCGACGACAATGGCGGGAACCGAGGCCAGCCCCATGTGATTTTGGTAGAGAGATATGGAGATGGCACTGCTAAAAGGTATTTGGTAGATGATGAACTGCAAGTACAAACATTTGTAGAGGAACCTAGTCCAAAACCTGATACGACGTCTCACAGCTCGCATTTCTCTAATACCGAGTTATCGTGGCTTCCGGATATTGTTAAAGATTTTATCTTTCCTGCTGGCTTCCCAGGATCTGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACTAATGTTACTGCATGGATCTGTCAAACTTTAGTCACCTCTAGTCTACTAAAGGCTGTCGGTGTTGGCTCTTTCTCTGGCAGTACTGCTGCTGCTTCGGCTGCTGCTATCAGATGGGTTTCAAAAGATGGAATAGGAGCTGTTGGACGCTTTTTTATCGGTGGGCGATTTGGAAACCTTTTTGATGATGATCCAAAGCAGTGGCGCTTATATGCGGACTTCATTGGCAGTGCAGGAAGCATTTTTGATCTTACCACACCACTGTATCCTGCCTATTTCCTGCCATTGGCATCTCTTGGAAATCTTACCAAGGCTGTTGCTAGAGGACTAAAAGATCCTTCATTCCGTGTGATTCAAAGTCATTTTGCAATTTCGGGAAATCTGGGAGATATAGCAGCAAAGGAAGAAGTTTGGGAAGTAACTGCTCAGCTGCTTGGCCTTGGTTTGGGCATATTGTTCCTGGATACACCTGGCCTTGTAAAATCATACTCGACTCTGGTGACTACATGGATGGCCATGCGGCTTCTGCACCTCTGGTTGCGCTATCAATCACTATCAGTCCTCCAATTTAATTCAATAAATCTTAAGCGTGCTTGTATATTGGTAAAATCACACATAATATACTCTGTGGTTCCTGGTATTAGTAGTTGCAATAAGGAAGAAAACATATTATTGTGGCCAAGATTCATGGCACCACGAATTACATTTGGTGTGCCCTTGGAAGAGATGATTTCTGGGGAGAAAGCTGCTCCAACGGTTAAGGCACTTCTGAAACTATATGCAAAGGAGAAGTATATTCTTGTAGTGAACCGACAAAGAAGTGACTTTGAGGTCTTTGTGTCGTTTAAGGTAGGAGCTACAAGTATGTCCGTCTTACGAGGTTTATGGCAAGCTTATTGGTTACATGAGAACTGGAATACCTCAAGTGTCGCACTCGAACAGCTTGCACAAAGTCATTTGGAGATGGAAGATAGGTTCGAGGACTTCATCCAACAGCTGAATGGAATTGGCTGGGATACACTTCAAATTAACTTGAAGGTCCCCAAGGAAATTTCCCTCGATGAATTGAACACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

490

Amino Acids

54.32

Weight (kDa)

6.17

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 97 - 336 1e-66 Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C PF24160 343 - 476 8.9e-09 Root UVB sensitive protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012199)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1220
AatII GACGTC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 1081
AccI GTMKAC 1 cut(s) 436
AccIII TCCGGA 1 cut(s) 301
AciI CCGC 3 cut(s) 126, 605, 910
AclWI GGATC 4 cut(s) 352, 416, 575, 719
AcoI YGGCCR 2 cut(s) 903, 1067
AcsI RAATTY 1 cut(s) 1440
AcvI CACGTG 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 3 cut(s) 216, 371, 475
AfiI CCNNNNNNNGG 2 cut(s) 676, 835
AflII CTTAAG 1 cut(s) 974
AflIII ACRYGT 1 cut(s) 372
AgsI TTSAA 6 cut(s) 513, 746, 966, 1415, 1426, 1459
AjnI CCWGG 4 cut(s) 340, 849, 859, 1024
AloI GAACNNNNNNTCC 2 cut(s) 1349, 1381
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 4 cut(s) 352, 416, 575, 719
AlwNI CAGNNNCTG 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 301
AoxI GGCC 5 cut(s) 136, 826, 862, 903, 1067
ApeKI GCWGC 8 cut(s) 90, 479, 482, 491, 494, 785, 820, 1136
ApoI RAATTY 1 cut(s) 1440
AspLEI GCGC 3 cut(s) 14, 597, 933
AspS9I GGNCC 1 cut(s) 1429
AsuHPI GGTGA 2 cut(s) 418, 901
AvaII GGWCC 1 cut(s) 1429
BaeGI GKGCMC 1 cut(s) 1107
BaeI ACNNNNGTAYC 2 cut(s) 638, 671
BalI TGGCCA 2 cut(s) 905, 1069
BanI GGYRCC 1 cut(s) 1081
BbrPI CACGTG 1 cut(s) 87
BbvI GCAGC 8 cut(s) 77, 466, 469, 478, 481, 797, 807, 1123
BccI CCATC 5 cut(s) 167, 498, 512, 895, 1348
BcgI CGANNNNNNTGC 4 cut(s) 69, 103, 1316, 1350
BciT130I CCWGG 4 cut(s) 342, 851, 861, 1026
BciVI GTATCC 3 cut(s) 666, 847, 1399
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 4 cut(s) 45, 237, 432, 711
BfmI CTRYAG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 598
BfrI CTTAAG 1 cut(s) 974
BfuI GTATCC 3 cut(s) 666, 847, 1399
BisI GCNGC 9 cut(s) 91, 480, 483, 492, 495, 786, 821, 911, 1137
BlpI GCTNAGC 1 cut(s) 816
BlsI GCNGC 9 cut(s) 92, 481, 484, 493, 496, 787, 822, 912, 1138
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 4 cut(s) 342, 851, 861, 1026
Bme18I GGWCC 1 cut(s) 1429
BmgT120I GGNCC 1 cut(s) 1429
BmiI GGNNCC 5 cut(s) 131, 234, 1023, 1083, 1431
BmrFI CCNGG 4 cut(s) 342, 851, 861, 1026
BmsI GCATC 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 816
BpuEI CTTGAG 1 cut(s) 1297
BsaAI YACGTR 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 6 cut(s) 133, 340, 699, 829, 1107, 1434
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 2 cut(s) 676, 835
Bse1I ACTGG 1 cut(s) 1307
Bse8I GATNNNNATC 1 cut(s) 579
BseAI TCCGGA 1 cut(s) 301
BseBI CCWGG 4 cut(s) 342, 851, 861, 1026
BseDI CCNNGG 6 cut(s) 133, 340, 699, 829, 1107, 1434
BseGI GGATG 2 cut(s) 906, 1377
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 2 cut(s) 676, 835
BseMII CTCAG 2 cut(s) 122, 830
BseNI ACTGG 1 cut(s) 1307
BseRI GAGGAG 2 cut(s) 85, 88
BseSI GKGCMC 1 cut(s) 1107
BseXI GCAGC 8 cut(s) 77, 466, 469, 478, 481, 797, 807, 1123
BseYI CCCAGC 1 cut(s) 1401
BsgI GTGCAG 2 cut(s) 642, 902
BshFI GGCC 5 cut(s) 138, 828, 864, 905, 1069
BshNI GGYRCC 1 cut(s) 1081
BsiSI CCGG 1 cut(s) 302
BslFI GGGAC 1 cut(s) 1415
BslI CCNNNNNNNGG 2 cut(s) 676, 835
BsmAI GTCTC 1 cut(s) 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 1415
BsnI GGCC 5 cut(s) 138, 828, 864, 905, 1069
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp13I TCCGGA 1 cut(s) 301
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 5 cut(s) 344, 408, 580, 637, 724
Bsp1720I GCTNAGC 1 cut(s) 816
BspACI CCGC 3 cut(s) 126, 605, 910
BspANI GGCC 5 cut(s) 138, 828, 864, 905, 1069
BspCNI CTCAG 2 cut(s) 121, 829
BspEI TCCGGA 1 cut(s) 301
BspLI GGNNCC 5 cut(s) 131, 234, 1023, 1083, 1431
BspPI GGATC 4 cut(s) 352, 416, 575, 719
BspT107I GGYRCC 1 cut(s) 1081
BspTI CTTAAG 1 cut(s) 974
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 1 cut(s) 1307
BssECI CCNNGG 6 cut(s) 133, 340, 699, 829, 1107, 1434
BssMI GATC 5 cut(s) 344, 408, 580, 637, 724
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 4 cut(s) 699, 829, 1107, 1434
Bst2UI CCWGG 4 cut(s) 342, 851, 861, 1026
Bst4CI ACNGT 3 cut(s) 384, 654, 1147
Bst6I CTCTTC 2 cut(s) 106, 1107
BstACI GRCGYC 1 cut(s) 257
BstAFI CTTAAG 1 cut(s) 974
BstAUI TGTACA 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 87
BstC8I GCNNGC 7 cut(s) 70, 140, 269, 334, 981, 1281, 1335
BstDEI CTNAG 2 cut(s) 108, 816
BstF5I GGATG 2 cut(s) 906, 1377
BstH2I RGCGCY 1 cut(s) 598
BstHHI GCGC 3 cut(s) 14, 597, 933
BstKTI GATC 5 cut(s) 347, 411, 583, 640, 727
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 5 cut(s) 344, 408, 580, 637, 724
BstMWI GCNNNNNNNGC 3 cut(s) 488, 491, 916
BstNI CCWGG 4 cut(s) 342, 851, 861, 1026
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 4 cut(s) 340, 849, 859, 1024
BstSFI CTRYAG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 1107
BstV1I GCAGC 8 cut(s) 77, 466, 469, 478, 481, 797, 807, 1123
BstX2I RGATCY 3 cut(s) 344, 408, 724
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 3 cut(s) 344, 408, 724
BsuI GTATCC 3 cut(s) 666, 847, 1399
BsuRI GGCC 5 cut(s) 138, 828, 864, 905, 1069
BtsCI GGATG 2 cut(s) 906, 1377
BtsI GCAGTG 3 cut(s) 177, 596, 625
BtsIMutI CAGTG 4 cut(s) 177, 596, 625, 650
Cac8I GCNNGC 7 cut(s) 70, 140, 269, 334, 981, 1281, 1335
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 3 cut(s) 14, 597, 933
Cfr13I GGNCC 1 cut(s) 1429
CseI GACGC 1 cut(s) 546
Csp6I GTAC 3 cut(s) 215, 370, 474
CviAII CATG 7 cut(s) 146, 373, 405, 897, 907, 1078, 1295
CviQI GTAC 3 cut(s) 215, 370, 474
DdeI CTNAG 2 cut(s) 108, 816
DpnI GATC 5 cut(s) 346, 410, 582, 639, 726
DpnII GATC 5 cut(s) 344, 408, 580, 637, 724
DrdI GACNNNNNNGTC 1 cut(s) 1220
DseDI GACNNNNNNGTC 1 cut(s) 1220
EaeI YGGCCR 2 cut(s) 903, 1067
Eam1104I CTCTTC 2 cut(s) 106, 1107
EarI CTCTTC 2 cut(s) 106, 1107
Eco130I CCWWGG 4 cut(s) 699, 829, 1107, 1434
Eco47I GGWCC 1 cut(s) 1429
Eco72I CACGTG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 1429
EcoRII CCWGG 4 cut(s) 340, 849, 859, 1024
EcoT14I CCWWGG 4 cut(s) 699, 829, 1107, 1434
ErhI CCWWGG 4 cut(s) 699, 829, 1107, 1434
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 7 cut(s) 149, 376, 408, 900, 910, 1081, 1298
FaqI GGGAC 1 cut(s) 1415
FatI CATG 7 cut(s) 145, 372, 404, 896, 906, 1077, 1294
FauI CCCGC 1 cut(s) 119
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 9 cut(s) 91, 480, 483, 492, 495, 786, 821, 911, 1137
FokI GGATG 2 cut(s) 913, 1364
Fsp4HI GCNGC 9 cut(s) 91, 480, 483, 492, 495, 786, 821, 911, 1137
FspBI CTAG 4 cut(s) 45, 237, 432, 711
GlaI GCGC 3 cut(s) 13, 596, 932
GluI GCNGC 9 cut(s) 91, 480, 483, 492, 495, 786, 821, 911, 1137
GsaI CCCAGC 1 cut(s) 1405
HaeII RGCGCY 1 cut(s) 598
HaeIII GGCC 5 cut(s) 138, 828, 864, 905, 1069
HapII CCGG 1 cut(s) 302
HgaI GACGC 1 cut(s) 546
HhaI GCGC 3 cut(s) 14, 597, 933
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 7 cut(s) 149, 376, 408, 900, 910, 1081, 1298
Hin6I GCGC 3 cut(s) 12, 595, 931
HinP1I GCGC 3 cut(s) 12, 595, 931
HindIII AAGCTT 1 cut(s) 1281
HinfI GANTC 4 cut(s) 81, 742, 883, 1074
HpaII CCGG 1 cut(s) 302
HphI GGTGA 2 cut(s) 418, 901
Hpy166II GTNNAC 2 cut(s) 437, 1198
Hpy188I TCNGA 5 cut(s) 65, 115, 355, 503, 1161
Hpy188III TCNNGA 4 cut(s) 45, 78, 302, 765
Hpy8I GTNNAC 2 cut(s) 437, 1198
Hpy99I CGWCG 2 cut(s) 119, 259
HpyAV CCTTC 2 cut(s) 738, 1420
HpyCH4III ACNGT 3 cut(s) 384, 654, 1147
HpyCH4IV ACGT 2 cut(s) 86, 257
HpyCH4V TGCA 8 cut(s) 211, 404, 623, 758, 919, 1041, 1172, 1337
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 491, 916
HpyF3I CTNAG 2 cut(s) 108, 816
HpySE526I ACGT 2 cut(s) 86, 257
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 7 cut(s) 149, 376, 408, 900, 910, 1081, 1298
HspAI GCGC 3 cut(s) 12, 595, 931
Kpn2I TCCGGA 1 cut(s) 301
Kzo9I GATC 5 cut(s) 344, 408, 580, 637, 724
LmnI GCTCC 4 cut(s) 98, 527, 1144, 1244
Lsp1109I GCAGC 8 cut(s) 77, 466, 469, 478, 481, 797, 807, 1123
LweI GCATC 1 cut(s) 689
MaeI CTAG 4 cut(s) 45, 237, 432, 711
MaeII ACGT 2 cut(s) 86, 257
MaeIII GTNAC 7 cut(s) 378, 397, 424, 808, 889, 1211, 1290
MalI GATC 5 cut(s) 346, 410, 582, 639, 726
MboI GATC 5 cut(s) 344, 408, 580, 637, 724
MboII GAAGA 7 cut(s) 33, 93, 96, 806, 1061, 1124, 1370
MflI RGATCY 3 cut(s) 344, 408, 724
MhlI GDGCHC 1 cut(s) 1107
MlsI TGGCCA 2 cut(s) 905, 1069
MluCI AATT 9 cut(s) 58, 759, 956, 961, 1089, 1395, 1416, 1440, 1454
MluNI TGGCCA 2 cut(s) 905, 1069
MlyI GAGTC 1 cut(s) 877
MmeI TCCRAC 4 cut(s) 138, 514, 1166, 1405
Mox20I TGGCCA 2 cut(s) 905, 1069
MroI TCCGGA 1 cut(s) 301
MscI TGGCCA 2 cut(s) 905, 1069
MseI TTAA 6 cut(s) 312, 960, 975, 1149, 1236, 1419
Msp20I TGGCCA 2 cut(s) 905, 1069
MspA1I CMGCKG 2 cut(s) 820, 1387
MspCI CTTAAG 1 cut(s) 974
MspI CCGG 1 cut(s) 302
MspR9I CCNGG 4 cut(s) 342, 851, 861, 1026
MvaI CCWGG 4 cut(s) 342, 851, 861, 1026
MwoI GCNNNNNNNGC 3 cut(s) 488, 491, 916
NdeII GATC 5 cut(s) 344, 408, 580, 637, 724
NlaIII CATG 7 cut(s) 149, 376, 408, 900, 910, 1081, 1298
NlaIV GGNNCC 5 cut(s) 131, 234, 1023, 1083, 1431
NmuCI GTSAC 3 cut(s) 424, 889, 1211
NspI RCATGY 1 cut(s) 376
PciI ACATGT 1 cut(s) 372
PfeI GAWTC 3 cut(s) 81, 742, 1074
PfoI TCCNGGA 1 cut(s) 849
PkrI GCNGC 9 cut(s) 92, 481, 484, 493, 496, 787, 822, 912, 1138
PleI GAGTC 1 cut(s) 877
PmaCI CACGTG 1 cut(s) 87
PmlI CACGTG 1 cut(s) 87
PpsI GAGTC 1 cut(s) 877
Ppu21I YACGTR 1 cut(s) 87
PpuMI RGGWCCY 1 cut(s) 1429
PscI ACATGT 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 1429
Psp6I CCWGG 4 cut(s) 340, 849, 859, 1024
PspCI CACGTG 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 1401
PspGI CCWGG 4 cut(s) 340, 849, 859, 1024
PspN4I GGNNCC 5 cut(s) 131, 234, 1023, 1083, 1431
PspPI GGNCC 1 cut(s) 1429
PspPPI RGGWCCY 1 cut(s) 1429
PsrI GAACNNNNNNTAC 2 cut(s) 198, 230
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 3 cut(s) 344, 408, 724
PvuII CAGCTG 2 cut(s) 820, 1387
RsaI GTAC 3 cut(s) 216, 371, 475
RsaNI GTAC 3 cut(s) 215, 370, 474
SaqAI TTAA 6 cut(s) 312, 960, 975, 1149, 1236, 1419
SatI GCNGC 9 cut(s) 91, 480, 483, 492, 495, 786, 821, 911, 1137
Sau3AI GATC 5 cut(s) 344, 408, 580, 637, 724
Sau96I GGNCC 1 cut(s) 1429
ScaI AGTACT 1 cut(s) 475
SchI GAGTC 1 cut(s) 877
ScrFI CCNGG 4 cut(s) 342, 851, 861, 1026
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 1 cut(s) 17
SinI GGWCC 1 cut(s) 1429
SmlI CTYRAG 2 cut(s) 974, 1312
SmoI CTYRAG 2 cut(s) 974, 1312
Sse9I AATT 9 cut(s) 58, 759, 956, 961, 1089, 1395, 1416, 1440, 1454
SsiI CCGC 3 cut(s) 126, 605, 910
SspMI CTAG 4 cut(s) 45, 237, 432, 711
StyD4I CCNGG 4 cut(s) 340, 849, 859, 1024
StyI CCWWGG 4 cut(s) 699, 829, 1107, 1434
TaaI ACNGT 3 cut(s) 384, 654, 1147
TaiI ACGT 2 cut(s) 89, 260
TaqI TCGA 5 cut(s) 79, 881, 1326, 1368, 1449
TasI AATT 9 cut(s) 58, 759, 956, 961, 1089, 1395, 1416, 1440, 1454
TatI WGTACW 3 cut(s) 214, 369, 473
TauI GCSGC 1 cut(s) 913
TfiI GAWTC 3 cut(s) 81, 742, 1074
Tru1I TTAA 6 cut(s) 312, 960, 975, 1149, 1236, 1419
Tru9I TTAA 6 cut(s) 312, 960, 975, 1149, 1236, 1419
TscAI CASTG 4 cut(s) 184, 596, 625, 657
TseFI GTSAC 3 cut(s) 424, 889, 1211
TseI GCWGC 8 cut(s) 90, 479, 482, 491, 494, 785, 820, 1136
Tsp45I GTSAC 3 cut(s) 424, 889, 1211
TspDTI ATGAA 6 cut(s) 219, 601, 720, 1066, 1366, 1467
TspGWI ACGGA 2 cut(s) 725, 1249
TspRI CASTG 4 cut(s) 184, 596, 625, 657
Vha464I CTTAAG 1 cut(s) 974
VpaK11BI GGWCC 1 cut(s) 1429
XapI RAATTY 1 cut(s) 1440
XbaI TCTAGA 1 cut(s) 44
XceI RCATGY 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 1388
XmiI GTMKAC 1 cut(s) 436
XspI CTAG 4 cut(s) 45, 237, 432, 711
ZraI GACGTC 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.