Rw3G010240

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0012199
Physical Location & Seq
Forward (+)
9846868 .. 9850551
3684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010240.1

Sequence Viewer

Length: 1455 bp
ATGCCTTGTTGCGCATTACAGCTATCCCTCCCCATTTATGCTTTCGATTCTTCTAGAAAGACTGCGAACTTCAGACCTTGCCACTCTCGAATCGCGTGCTCCTCCTCTTCTCAATCTGGCCAGCCTCAGCCGCATGTGATCTTGGTAGAGAGATATGGAAATGGCACTGCTAAGAGGTATGTGGTAGATGATGAACTGCAAGTACAGACATTTGTAGAGGAACCTAGTTCAAAAGCTAATACATCTCAGAGCTCGCATTTCTCCAATACCGAGTTATCGTGGCTTCCCGATATTGTTAAAGATTTTATCTTTCCTGCAGGCTTCCCAGGATCAGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACCAATGTTACTGCATGGATTTGTCACACTTTAGTCACCTCAAGTCTACTAAAGGCTGTTGGTGTTGGCTCTTTCTCTGGCAGTACTGCTGCTGCTTCGGCTGCTGCTATCAGATGGGTTTCGAAAGATGGAATAGGAGCTGTTGGACGCTTATTTATCGGTGGGCGATTTGGGAATCTTTTTGATGATGATCCAAAGCAGTGGCGCTTATATGCAGACTTCATTGGTAGTGCAGGAAGCATTTTTGATCTTACTACACCAGTGTATCCTGCCTATTTCCTGCCATTGGCATCTCTTGGAAATCTTACCAAGGCTGTTGCTAGAGGACTAAAAGATCCTTCATTCCGTGTGATTCAAAGTCATTTTGCAATTTCGGGAAATCTGGGAGATGTAGCAGCAAAGGAAGAAGTTTGGGAAGTAACCGCTCAGCTGCTTGGCCTTGGTTTGGGCATACTTTTTCTGGATACACCTGGCCTTGTAAGATCATACCCAATTCTGGTAGCTACATGGATGGCCATGCGGCTTCTGCACCTCTGGTTACGCTATCAATCTCTATCAGTTCTCCAATTTAACTCGATAAATCTTAAGCGTGCTTGTATATTGGTAAAATCGCACGTATTACACTCTATCGTTCCTGGTATCGTTAGTTGCAATAAGGAAGAAAACATATTATTGTGGCCAAGATTCATGACACCCCAAATTACATTTGGTGTGCCCTTGGAAGAGATGATTTTTGGGGAGAAAGCTGCTCTGATGGTTAAGGCACTTCTGAAACTATATTCAAAGGAGAAGTATATTCTTGTAGTGAACCAACAAAAAAGTGACTTTGAGGTCTTTGTGTCATTTAAGGTGGGAGCTTCAAGTATGTCAGTTTTACGAAGTTTGTGGCAAGCTTATTGGTTACATGAGAACTGGAATAGCTCAAGTACTGCCCTCAAACAGCTTGCACAAAGCCGTTTGGAGATGGAAGATAGGTTTGAGGACTTCATCCAACAGTTGAATGGAATTGGATGGGATACACTTCAAATTAACCTGAAGGTTCCCAAGGAAATTTCCCTCGATGAATTGAACCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

484

Amino Acids

53.81

Weight (kDa)

7.1

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 92 - 332 1e-66 Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C PF24160 339 - 471 1.4e-08 Root UVB sensitive protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01510
fragaria_vesca FvH4_6g11500 FvH4_6g11500 FvH4_6g42101
prunus_persica Prupe.6G276600_v2.0.a1
pyrus_communis pycom04g13740
rosa_chinensis RchiOBHm_Chr3g0463211
rosa_laevigata RLG00000024802
rosa_multiflora Rmu_co8068106.1_g000001 Rmu_co8190904.1_g000001 Rmu_sc0004643.1_g000002
rosa_roxburghii Rroxscaffold_6G00416800
rosa_rugosa Rorug03G0062400
rosa_samantha Rh3AG120600 Rh3BG125000 Rh3CG127100 Rh3DG126100 Rh3DG126200
rosa_wichuraiana Rw3G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1205
Acc16I TGCGCA 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 800
AccI GTMKAC 1 cut(s) 421
AccII CGCG 1 cut(s) 95
AciI CCGC 3 cut(s) 131, 798, 895
AclWI GGATC 3 cut(s) 337, 560, 704
AcoI YGGCCR 3 cut(s) 118, 888, 1052
AcsI RAATTY 1 cut(s) 1425
AcuI CTGAAG 2 cut(s) 55, 1430
AfaI GTAC 4 cut(s) 204, 356, 460, 1303
AfiI CCNNNNNNNGG 3 cut(s) 661, 820, 871
AflII CTTAAG 1 cut(s) 959
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 7 cut(s) 231, 731, 1158, 1236, 1375, 1400, 1444
AjnI CCWGG 3 cut(s) 325, 844, 1009
Alw21I GWGCWC 2 cut(s) 101, 254
AlwI GGATC 3 cut(s) 337, 560, 704
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 5 cut(s) 118, 811, 847, 888, 1052
ApeKI GCWGC 7 cut(s) 464, 467, 476, 479, 770, 805, 1121
ApoI RAATTY 1 cut(s) 1425
AspLEI GCGC 2 cut(s) 14, 582
AsuHPI GGTGA 1 cut(s) 403
AsuII TTCGAA 1 cut(s) 497
BaeGI GKGCMC 1 cut(s) 1092
BaeI ACNNNNGTAYC 2 cut(s) 623, 656
BalI TGGCCA 3 cut(s) 120, 890, 1054
BanII GRGCYC 1 cut(s) 254
Bbv12I GWGCWC 2 cut(s) 101, 254
BbvCI CCTCAGC 1 cut(s) 126
BbvI GCAGC 7 cut(s) 451, 454, 463, 466, 782, 792, 1108
BccI CCATC 6 cut(s) 483, 497, 880, 1123, 1333, 1380
BceAI ACGGC 1 cut(s) 1314
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 3 cut(s) 327, 846, 1011
BciVI GTATCC 3 cut(s) 651, 832, 1384
BfaI CTAG 3 cut(s) 54, 225, 696
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 583
BfrI CTTAAG 1 cut(s) 959
BfuI GTATCC 3 cut(s) 651, 832, 1384
BisI GCNGC 9 cut(s) 131, 465, 468, 477, 480, 771, 806, 896, 1122
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 9 cut(s) 132, 466, 469, 478, 481, 772, 807, 897, 1123
BmcAI AGTACT 2 cut(s) 460, 1303
Bme1390I CCNGG 3 cut(s) 327, 846, 1011
BmiI GGNNCC 2 cut(s) 222, 1416
BmrFI CCNGG 3 cut(s) 327, 846, 1011
BmsI GCATC 1 cut(s) 674
Bpu10I CCTNAGC 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 801
Bpu14I TTCGAA 1 cut(s) 497
BpuEI CTTGAG 2 cut(s) 400, 1282
BsaAI YACGTR 1 cut(s) 991
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 5 cut(s) 325, 684, 814, 1092, 1419
Bsc4I CCNNNNNNNGG 3 cut(s) 661, 820, 871
Bse1I ACTGG 2 cut(s) 635, 1292
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 3 cut(s) 327, 846, 1011
BseDI CCNNGG 5 cut(s) 325, 684, 814, 1092, 1419
BseGI GGATG 3 cut(s) 891, 1362, 1391
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 3 cut(s) 661, 820, 871
BseMII CTCAG 3 cut(s) 140, 260, 815
BseNI ACTGG 2 cut(s) 635, 1292
BseRI GAGGAG 2 cut(s) 91, 94
BseSI GKGCMC 1 cut(s) 1092
BseXI GCAGC 7 cut(s) 451, 454, 463, 466, 782, 792, 1108
BsgI GTGCAG 2 cut(s) 627, 887
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 120, 813, 849, 890, 1054
BsiHKAI GWGCWC 2 cut(s) 101, 254
BslI CCNNNNNNNGG 3 cut(s) 661, 820, 871
BsnI GGCC 5 cut(s) 120, 813, 849, 890, 1054
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 3 cut(s) 101, 254, 1092
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 6 cut(s) 138, 329, 565, 622, 709, 857
Bsp1720I GCTNAGC 1 cut(s) 801
BspACI CCGC 3 cut(s) 131, 798, 895
BspANI GGCC 5 cut(s) 120, 813, 849, 890, 1054
BspCNI CTCAG 3 cut(s) 139, 259, 814
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 1062
BspLI GGNNCC 2 cut(s) 222, 1416
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 3 cut(s) 337, 560, 704
BspT104I TTCGAA 1 cut(s) 497
BspTI CTTAAG 1 cut(s) 959
BsrBI CCGCTC 1 cut(s) 800
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 2 cut(s) 635, 1292
BssECI CCNNGG 5 cut(s) 325, 684, 814, 1092, 1419
BssMI GATC 6 cut(s) 138, 329, 565, 622, 709, 857
BssT1I CCWWGG 4 cut(s) 684, 814, 1092, 1419
Bst2UI CCWGG 3 cut(s) 327, 846, 1011
Bst4CI ACNGT 2 cut(s) 369, 1371
Bst6I CTCTTC 2 cut(s) 112, 1092
BstAFI CTTAAG 1 cut(s) 959
BstAUI TGTACA 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 991
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 7 cut(s) 97, 122, 254, 319, 966, 1266, 1320
BstDEI CTNAG 4 cut(s) 126, 171, 246, 801
BstF5I GGATG 3 cut(s) 891, 1362, 1391
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 2 cut(s) 14, 582
BstKTI GATC 6 cut(s) 141, 332, 568, 625, 712, 860
BstMBI GATC 6 cut(s) 138, 329, 565, 622, 709, 857
BstMWI GCNNNNNNNGC 4 cut(s) 130, 473, 476, 901
BstNI CCWGG 3 cut(s) 327, 846, 1011
BstNSI RCATGY 2 cut(s) 137, 361
BstSCI CCNGG 3 cut(s) 325, 844, 1009
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 1092
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 7 cut(s) 451, 454, 463, 466, 782, 792, 1108
BstX2I RGATCY 1 cut(s) 709
BstXI CCANNNNNNTGG 1 cut(s) 576
BstYI RGATCY 1 cut(s) 709
BsuI GTATCC 3 cut(s) 651, 832, 1384
BsuRI GGCC 5 cut(s) 120, 813, 849, 890, 1054
BtsCI GGATG 3 cut(s) 891, 1362, 1391
BtsI GCAGTG 2 cut(s) 165, 581
BtsIMutI CAGTG 3 cut(s) 165, 581, 642
Cac8I GCNNGC 7 cut(s) 97, 122, 254, 319, 966, 1266, 1320
CaiI CAGNNNCTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 1062
CfoI GCGC 2 cut(s) 14, 582
CseI GACGC 1 cut(s) 531
Csp6I GTAC 4 cut(s) 203, 355, 459, 1302
CviAII CATG 7 cut(s) 134, 358, 390, 882, 892, 1063, 1280
CviQI GTAC 4 cut(s) 203, 355, 459, 1302
DdeI CTNAG 4 cut(s) 126, 171, 246, 801
DpnI GATC 6 cut(s) 140, 331, 567, 624, 711, 859
DpnII GATC 6 cut(s) 138, 329, 565, 622, 709, 857
DrdI GACNNNNNNGTC 1 cut(s) 1205
DseDI GACNNNNNNGTC 1 cut(s) 1205
EaeI YGGCCR 3 cut(s) 118, 888, 1052
Eam1104I CTCTTC 2 cut(s) 112, 1092
EarI CTCTTC 2 cut(s) 112, 1092
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 4 cut(s) 684, 814, 1092, 1419
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
Eco57I CTGAAG 2 cut(s) 55, 1430
EcoICRI GAGCTC 1 cut(s) 252
EcoRII CCWGG 3 cut(s) 325, 844, 1009
EcoT14I CCWWGG 4 cut(s) 684, 814, 1092, 1419
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 4 cut(s) 684, 814, 1092, 1419
FaeI CATG 7 cut(s) 137, 361, 393, 885, 895, 1066, 1283
FatI CATG 7 cut(s) 133, 357, 389, 881, 891, 1062, 1279
FblI GTMKAC 1 cut(s) 421
Fnu4HI GCNGC 9 cut(s) 131, 465, 468, 477, 480, 771, 806, 896, 1122
FokI GGATG 3 cut(s) 898, 1349, 1398
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 9 cut(s) 131, 465, 468, 477, 480, 771, 806, 896, 1122
FspBI CTAG 3 cut(s) 54, 225, 696
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 2 cut(s) 13, 581
GluI GCNGC 9 cut(s) 131, 465, 468, 477, 480, 771, 806, 896, 1122
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 5 cut(s) 120, 813, 849, 890, 1054
HgaI GACGC 1 cut(s) 531
HhaI GCGC 2 cut(s) 14, 582
Hin1II CATG 7 cut(s) 137, 361, 393, 885, 895, 1066, 1283
Hin6I GCGC 2 cut(s) 12, 580
HinP1I GCGC 2 cut(s) 12, 580
HindIII AAGCTT 1 cut(s) 1266
HinfI GANTC 5 cut(s) 47, 90, 550, 727, 1059
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 422, 1183
Hpy188I TCNGA 6 cut(s) 74, 249, 340, 488, 1128, 1146
Hpy188III TCNNGA 6 cut(s) 54, 87, 287, 750, 836, 1063
Hpy8I GTNNAC 2 cut(s) 422, 1183
HpyAV CCTTC 2 cut(s) 723, 1405
HpyCH4III ACNGT 2 cut(s) 369, 1371
HpyCH4IV ACGT 1 cut(s) 990
HpyCH4V TGCA 9 cut(s) 199, 317, 389, 590, 608, 743, 904, 1026, 1322
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 473, 476, 901
HpyF3I CTNAG 4 cut(s) 126, 171, 246, 801
HpySE526I ACGT 1 cut(s) 990
Hsp92II CATG 7 cut(s) 137, 361, 393, 885, 895, 1066, 1283
HspAI GCGC 2 cut(s) 12, 580
Kzo9I GATC 6 cut(s) 138, 329, 565, 622, 709, 857
LmnI GCTCC 3 cut(s) 104, 512, 1229
Lsp1109I GCAGC 7 cut(s) 451, 454, 463, 466, 782, 792, 1108
LweI GCATC 1 cut(s) 674
MaeI CTAG 3 cut(s) 54, 225, 696
MaeII ACGT 1 cut(s) 990
MaeIII GTNAC 8 cut(s) 363, 382, 398, 409, 793, 912, 1196, 1275
MalI GATC 6 cut(s) 140, 331, 567, 624, 711, 859
MbiI CCGCTC 1 cut(s) 800
MboI GATC 6 cut(s) 138, 329, 565, 622, 709, 857
MboII GAAGA 6 cut(s) 42, 99, 791, 1046, 1109, 1355
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 3 cut(s) 101, 254, 1092
MlsI TGGCCA 3 cut(s) 120, 890, 1054
MluCI AATT 8 cut(s) 744, 867, 941, 1074, 1380, 1401, 1425, 1439
MluNI TGGCCA 3 cut(s) 120, 890, 1054
MmeI TCCRAC 2 cut(s) 499, 1390
Mox20I TGGCCA 3 cut(s) 120, 890, 1054
MscI TGGCCA 3 cut(s) 120, 890, 1054
MseI TTAA 6 cut(s) 297, 945, 960, 1134, 1221, 1404
Msp20I TGGCCA 3 cut(s) 120, 890, 1054
MspA1I CMGCKG 1 cut(s) 805
MspCI CTTAAG 1 cut(s) 959
MspR9I CCNGG 3 cut(s) 327, 846, 1011
MvaI CCWGG 3 cut(s) 327, 846, 1011
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 130, 473, 476, 901
NdeII GATC 6 cut(s) 138, 329, 565, 622, 709, 857
NlaIII CATG 7 cut(s) 137, 361, 393, 885, 895, 1066, 1283
NlaIV GGNNCC 2 cut(s) 222, 1416
NmuCI GTSAC 3 cut(s) 398, 409, 1196
NsbI TGCGCA 1 cut(s) 13
NspI RCATGY 2 cut(s) 137, 361
NspV TTCGAA 1 cut(s) 497
PagI TCATGA 1 cut(s) 1062
PciI ACATGT 1 cut(s) 357
PfeI GAWTC 5 cut(s) 47, 90, 550, 727, 1059
PkrI GCNGC 9 cut(s) 132, 466, 469, 478, 481, 772, 807, 897, 1123
Ppu21I YACGTR 1 cut(s) 991
PscI ACATGT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 254
Psp6I CCWGG 3 cut(s) 325, 844, 1009
PspGI CCWGG 3 cut(s) 325, 844, 1009
PspN4I GGNNCC 2 cut(s) 222, 1416
PsrI GAACNNNNNNTAC 2 cut(s) 186, 218
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 709
PvuII CAGCTG 1 cut(s) 805
RsaI GTAC 4 cut(s) 204, 356, 460, 1303
RsaNI GTAC 4 cut(s) 203, 355, 459, 1302
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 6 cut(s) 297, 945, 960, 1134, 1221, 1404
SatI GCNGC 9 cut(s) 131, 465, 468, 477, 480, 771, 806, 896, 1122
Sau3AI GATC 6 cut(s) 138, 329, 565, 622, 709, 857
SbfI CCTGCAGG 1 cut(s) 319
ScaI AGTACT 2 cut(s) 460, 1303
ScrFI CCNGG 3 cut(s) 327, 846, 1011
SdaI CCTGCAGG 1 cut(s) 319
SduI GDGCHC 3 cut(s) 101, 254, 1092
SfaNI GCATC 1 cut(s) 674
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 497
SmlI CTYRAG 3 cut(s) 415, 959, 1297
SmoI CTYRAG 3 cut(s) 415, 959, 1297
Sse8387I CCTGCAGG 1 cut(s) 319
Sse9I AATT 8 cut(s) 744, 867, 941, 1074, 1380, 1401, 1425, 1439
SsiI CCGC 3 cut(s) 131, 798, 895
SspMI CTAG 3 cut(s) 54, 225, 696
SstI GAGCTC 1 cut(s) 254
StyD4I CCNGG 3 cut(s) 325, 844, 1009
StyI CCWWGG 4 cut(s) 684, 814, 1092, 1419
TaaI ACNGT 2 cut(s) 369, 1371
TaiI ACGT 1 cut(s) 993
TaqI TCGA 5 cut(s) 45, 88, 497, 950, 1434
TasI AATT 8 cut(s) 744, 867, 941, 1074, 1380, 1401, 1425, 1439
TatI WGTACW 4 cut(s) 202, 354, 458, 1301
TauI GCSGC 2 cut(s) 133, 898
TfiI GAWTC 5 cut(s) 47, 90, 550, 727, 1059
Tru1I TTAA 6 cut(s) 297, 945, 960, 1134, 1221, 1404
Tru9I TTAA 6 cut(s) 297, 945, 960, 1134, 1221, 1404
TscAI CASTG 3 cut(s) 172, 581, 642
TseFI GTSAC 3 cut(s) 398, 409, 1196
TseI GCWGC 7 cut(s) 464, 467, 476, 479, 770, 805, 1121
Tsp45I GTSAC 3 cut(s) 398, 409, 1196
TspDTI ATGAA 6 cut(s) 207, 586, 705, 1051, 1351, 1452
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 3 cut(s) 172, 581, 642
Vha464I CTTAAG 1 cut(s) 959
XapI RAATTY 1 cut(s) 1425
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 2 cut(s) 137, 361
XcmI CCANNNNNNNNNTGG 2 cut(s) 1079, 1373
XmiI GTMKAC 1 cut(s) 421
XspI CTAG 3 cut(s) 54, 225, 696
ZrmI AGTACT 2 cut(s) 460, 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.