pycom04g13740

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0012199
Physical Location & Seq
Reverse (-)
16694374 .. 16695460
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13740.3

Sequence Viewer

Length: 699 bp
ATGCCTTGTGGCGCTGCTGCTCTGCAACTCTCGCTTCCTACCTGCGCTTTCAACAAATCTTCTCGAAAGCCTCTCAATTTCAGACATTGCCGTTTCCGAACCGTCGCATCCTCTTCCTCCTCCTCCTCCTCTCAAGACGGAGATGTTAACGACGAAAATCGAGCCGGAAACGGCAGAAATCAACGGCAGACGCAAGTGATTTTAGTGGAGAGATATGGAAATGGCACTGCTAAGAGGTATGTGGTAGATGATGAATTTCAAGTGCAGACATTTGTCGAGGACGAACTTATTGGTTCGGTATCAGATAGTTCCGGGAGCTCACATTTCAACAACGAAAAATTATCATGGCTTCCGGATATTGTCAAAGATTTTATCTTTCCTGCAGGCTTCCCAGGATCGGTTTCTGATGATTATTTGTTGTACATGTTGTTACAGTTCCCTACCAATGTTACTGCATGGATATGCCATACCTTAGTCACATCTAGTCTCCTAAAGGCTGTCGGTGTTGGCTCTTTCTCAGGCAGTACGGCTGCTGCTTCAGCGGCTGCTATAAGGTGGATATTCCTTTTTGTTTTCTGTATCTTTAATTTTTGTGGAATCATACGTGCAAGTTACGTTCAACTTCTAGGATTTGAATCTAGAGATTTGCCTAAGACTCGAAAGCAAAGGACATCATCTGTTCAGCATTTTTATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

233

Amino Acids

25.63

Weight (kDa)

8.55

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01510
fragaria_vesca FvH4_6g11500 FvH4_6g11500 FvH4_6g42101
prunus_persica Prupe.6G276600_v2.0.a1
pyrus_communis pycom04g13740
rosa_chinensis RchiOBHm_Chr3g0463211
rosa_laevigata RLG00000024802
rosa_multiflora Rmu_co8068106.1_g000001 Rmu_co8190904.1_g000001 Rmu_sc0004643.1_g000002
rosa_roxburghii Rroxscaffold_6G00416800
rosa_rugosa Rorug03G0062400
rosa_samantha Rh3AG120600 Rh3BG125000 Rh3CG127100 Rh3DG126100 Rh3DG126200
rosa_wichuraiana Rw3G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AccIII TCCGGA 1 cut(s) 352
AciI CCGC 1 cut(s) 542
AclWI GGATC 1 cut(s) 403
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 2 cut(s) 422, 526
AfiI CCNNNNNNNGG 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 5 cut(s) 52, 260, 328, 620, 635
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 1 cut(s) 403
AlwNI CAGNNNCTG 1 cut(s) 545
Aor13HI TCCGGA 1 cut(s) 352
ApeKI GCWGC 5 cut(s) 14, 17, 530, 533, 545
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 2 cut(s) 14, 47
AsuC2I CCSGG 1 cut(s) 313
BanII GRGCYC 1 cut(s) 320
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 4, 517, 520, 532
BceAI ACGGC 4 cut(s) 75, 187, 200, 543
BciT130I CCWGG 1 cut(s) 393
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 3 cut(s) 483, 626, 639
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 15
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 6 cut(s) 15, 18, 531, 534, 543, 546
BlsI GCNGC 6 cut(s) 16, 19, 532, 535, 544, 547
Bme1390I CCNGG 2 cut(s) 313, 393
BmrFI CCNGG 2 cut(s) 313, 393
BmsI GCATC 1 cut(s) 116
BoxI GACNNNNGTC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 313
BsaAI YACGTR 1 cut(s) 605
BsaBI GATNNNNATC 1 cut(s) 634
BsaJI CCNNGG 1 cut(s) 391
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 634
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 634
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 531
BseRI GAGGAG 4 cut(s) 109, 112, 115, 118
BseXI GCAGC 4 cut(s) 4, 517, 520, 532
BsgI GTGCAG 1 cut(s) 284
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 3 cut(s) 165, 312, 353
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 1 cut(s) 395
BspACI CCGC 1 cut(s) 542
BspCNI CTCAG 1 cut(s) 530
BspEI TCCGGA 1 cut(s) 352
BspMAI CTGCAG 1 cut(s) 385
BspMI ACCTGC 1 cut(s) 50
BspPI GGATC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 103, 435
Bst6I CTCTTC 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 420
BstBAI YACGTR 1 cut(s) 605
BstC8I GCNNGC 1 cut(s) 385
BstDEI CTNAG 4 cut(s) 231, 472, 517, 651
BstF5I GGATG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 2 cut(s) 14, 47
BstKTI GATC 1 cut(s) 398
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 1 cut(s) 395
BstMWI GCNNNNNNNGC 3 cut(s) 31, 539, 542
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 1 cut(s) 427
BstPAI GACNNNNGTC 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 311, 391
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 4 cut(s) 4, 517, 520, 532
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 385
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 2 cut(s) 14, 47
CseI GACGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 421, 525
CviAII CATG 3 cut(s) 345, 424, 456
CviJI RGCY 9 cut(s) 70, 164, 318, 349, 387, 497, 510, 530, 545
CviKI_1 RGCY 9 cut(s) 70, 164, 318, 349, 387, 497, 510, 530, 545
CviQI GTAC 2 cut(s) 421, 525
DdeI CTNAG 4 cut(s) 231, 472, 517, 651
DpnI GATC 1 cut(s) 397
DpnII GATC 1 cut(s) 395
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 320
FaeI CATG 3 cut(s) 348, 427, 459
FatI CATG 3 cut(s) 344, 423, 455
Fnu4HI GCNGC 6 cut(s) 15, 18, 531, 534, 543, 546
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 6 cut(s) 15, 18, 531, 534, 543, 546
FspBI CTAG 3 cut(s) 483, 626, 639
GlaI GCGC 2 cut(s) 13, 46
GluI GCNGC 6 cut(s) 15, 18, 531, 534, 543, 546
HaeII RGCGCY 1 cut(s) 15
HapII CCGG 3 cut(s) 165, 312, 353
HgaI GACGC 1 cut(s) 199
HhaI GCGC 2 cut(s) 14, 47
Hin1II CATG 3 cut(s) 348, 427, 459
Hin6I GCGC 2 cut(s) 12, 45
HinP1I GCGC 2 cut(s) 12, 45
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 3 cut(s) 597, 635, 655
HpaI GTTAAC 1 cut(s) 148
HpaII CCGG 3 cut(s) 165, 312, 353
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 4 cut(s) 83, 98, 304, 406
Hpy188III TCNNGA 4 cut(s) 63, 134, 353, 639
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 107, 155
HpyCH4III ACNGT 2 cut(s) 103, 435
HpyCH4IV ACGT 2 cut(s) 604, 615
HpyCH4V TGCA 5 cut(s) 25, 265, 383, 455, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 539, 542
HpyF3I CTNAG 4 cut(s) 231, 472, 517, 651
HpySE526I ACGT 2 cut(s) 604, 615
Hsp92II CATG 3 cut(s) 348, 427, 459
HspAI GCGC 2 cut(s) 12, 45
Kpn2I TCCGGA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 395
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 9 cut(s) 55, 178, 325, 366, 369, 378, 393, 405, 504
Lsp1109I GCAGC 4 cut(s) 4, 517, 520, 532
LweI GCATC 1 cut(s) 116
MaeI CTAG 3 cut(s) 483, 626, 639
MaeII ACGT 2 cut(s) 604, 615
MaeIII GTNAC 4 cut(s) 429, 448, 475, 611
MalI GATC 1 cut(s) 397
MboI GATC 1 cut(s) 395
MboII GAAGA 2 cut(s) 51, 105
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 4 cut(s) 76, 254, 338, 586
MlyI GAGTC 1 cut(s) 649
MnlI CCTC 9 cut(s) 81, 121, 127, 130, 133, 136, 139, 228, 271
MroI TCCGGA 1 cut(s) 352
MseI TTAA 2 cut(s) 147, 585
MslI CAYNNNNRTG 2 cut(s) 460, 690
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 3 cut(s) 165, 312, 353
MspR9I CCNGG 2 cut(s) 313, 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 31, 539, 542
NciI CCSGG 1 cut(s) 313
NdeII GATC 1 cut(s) 395
NlaIII CATG 3 cut(s) 348, 427, 459
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 427
PciI ACATGT 1 cut(s) 423
PfeI GAWTC 2 cut(s) 597, 635
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 6 cut(s) 16, 19, 532, 535, 544, 547
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Ppu21I YACGTR 1 cut(s) 605
PscI ACATGT 1 cut(s) 423
PshAI GACNNNNGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 422, 526
RsaNI GTAC 2 cut(s) 421, 525
RseI CAYNNNNRTG 2 cut(s) 460, 690
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 2 cut(s) 147, 585
SatI GCNGC 6 cut(s) 15, 18, 531, 534, 543, 546
Sau3AI GATC 1 cut(s) 395
SbfI CCTGCAGG 1 cut(s) 385
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 313, 393
SdaI CCTGCAGG 1 cut(s) 385
SduI GDGCHC 1 cut(s) 320
SetI ASST 7 cut(s) 44, 239, 320, 473, 557, 607, 618
SfaNI GCATC 1 cut(s) 116
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 460, 690
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse8387I CCTGCAGG 1 cut(s) 385
Sse9I AATT 4 cut(s) 76, 254, 338, 586
SsiI CCGC 1 cut(s) 542
SspMI CTAG 3 cut(s) 483, 626, 639
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 311, 391
TaaI ACNGT 2 cut(s) 103, 435
TaiI ACGT 2 cut(s) 607, 618
TaqI TCGA 4 cut(s) 64, 160, 276, 658
TasI AATT 4 cut(s) 76, 254, 338, 586
TatI WGTACW 1 cut(s) 420
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 2 cut(s) 597, 635
Tru1I TTAA 2 cut(s) 147, 585
Tru9I TTAA 2 cut(s) 147, 585
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 5 cut(s) 14, 17, 530, 533, 545
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 1 cut(s) 232
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 638
XceI RCATGY 1 cut(s) 427
XspI CTAG 3 cut(s) 483, 626, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.