Rmu_sc0004643.1_g000002

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004643.1
OG0012199
Physical Location & Seq
Reverse (-)
4956 .. 8640
3685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004643.1_g000002.1.cds

Sequence Viewer

Length: 1518 bp
atgccttgttgcgctttacagctatccctccccatttatgctttcgattcttctagaaagactgcgaacttcagaccttgccactctcgaatcgcgtgctcctcctcttctcaatctggcattcgcaaagatgatgatgatgatgacattgaaaaccaggtcgataatggcaggaaccgaggccagcctcagccgcatgtgatcttggtagagagatatggaaatggcactgctaagaggtatgtggtagatgatgaactgcaagtacagacatttgtagaggaacctagttcaaaagctaatacatctcagagctcgcatttctccaataccgagttatcgtggcttcccgacattgttaaggattttatctttcctgcaggcttcccaggatcagtttctgatgattatttattgtacatgttgttacagttccctaccaatgttactgcatggatttgtcacactttagtcacctcaagtctactaaaggctgttggtgtcggctctttctctggcagtactgctgctgcttcggctgctgctatcagatgggtttcgaaagatggaataggagctgttggacgcttatttatcggtgggcgatttgggaatctttttgatgatgatccaaagcagtggcgcttatatgcagacttcattggcagtgcaggaagcatttttgatcttactacaccattgtatcctgcctatttcctgccattggcatctcttggaaatcttaccaaggctgttgctagaggactaaaagatccttcattccgtgtgattcaaagtcattttgcaatttcgggaaatctgggagatgtagcagcaaaggaagaagtttgggaagtaaccgctcagctgcttggccttggtttgggcatactttttctggatacacctggccttgtaagatcatacccaattctggtaactacatggatggccatgcggcttctgcacctctggttacgctatcaatctctatcagttctccaatttaactcgataaatcttaagcgtgcttgtatattggtaaaatcgcacatattacactctatcgttcctggtatcgttagttgcaataaggaagaaaacatattattgtggccaagattcatgacaccccaaattacatttggtgtgcccttggaagagatgatttttggggagaaagctgctctgatggttaaggcacttctgaaactatattcaaaggagaagtatattcttgtagtgaaccaacaaaaaagtgactttgaggtctttgtgtcatttaaggtgggagcttcaagtatgtcagttttacgaagtttgtggcaagcttattggttacatgagaactggaatagctcaagtactgccctcaaacagcttgcacaaagccgtttggagatggaagataggtttgaggacttcatccaacagttgaatggaattggatgggatacacttcaaattaacctgaaggttcccaaggaaatttccctcgatgaattgaaccccatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

505

Amino Acids

56.31

Weight (kDa)

6.17

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01510
fragaria_vesca FvH4_6g11500 FvH4_6g11500 FvH4_6g42101
prunus_persica Prupe.6G276600_v2.0.a1
pyrus_communis pycom04g13740
rosa_chinensis RchiOBHm_Chr3g0463211
rosa_laevigata RLG00000024802
rosa_multiflora Rmu_co8068106.1_g000001 Rmu_co8190904.1_g000001 Rmu_sc0004643.1_g000002
rosa_roxburghii Rroxscaffold_6G00416800
rosa_rugosa Rorug03G0062400
rosa_samantha Rh3AG120600 Rh3BG125000 Rh3CG127100 Rh3DG126100 Rh3DG126200
rosa_wichuraiana Rw3G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1268
AccBSI CCGCTC 1 cut(s) 863
AccI GTMKAC 1 cut(s) 484
AccII CGCG 1 cut(s) 95
AciI CCGC 3 cut(s) 194, 861, 958
AclWI GGATC 3 cut(s) 400, 623, 767
AcoI YGGCCR 2 cut(s) 951, 1115
AcsI RAATTY 1 cut(s) 1488
AcuI CTGAAG 2 cut(s) 55, 1493
AfaI GTAC 4 cut(s) 267, 419, 523, 1366
AfiI CCNNNNNNNGG 3 cut(s) 724, 883, 934
AflII CTTAAG 1 cut(s) 1022
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 8 cut(s) 152, 294, 794, 1221, 1299, 1438, 1463, 1507
AjnI CCWGG 4 cut(s) 156, 388, 907, 1072
Alw21I GWGCWC 2 cut(s) 101, 317
AlwI GGATC 3 cut(s) 400, 623, 767
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 5 cut(s) 181, 874, 910, 951, 1115
ApeKI GCWGC 7 cut(s) 527, 530, 539, 542, 833, 868, 1184
ApoI RAATTY 1 cut(s) 1488
AspLEI GCGC 2 cut(s) 14, 645
AsuHPI GGTGA 1 cut(s) 466
AsuII TTCGAA 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 1155
BaeI ACNNNNGTAYC 2 cut(s) 686, 719
BalI TGGCCA 2 cut(s) 953, 1117
BanII GRGCYC 1 cut(s) 317
Bbv12I GWGCWC 2 cut(s) 101, 317
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 7 cut(s) 514, 517, 526, 529, 845, 855, 1171
BccI CCATC 6 cut(s) 546, 560, 943, 1186, 1396, 1443
BceAI ACGGC 1 cut(s) 1377
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 4 cut(s) 158, 390, 909, 1074
BciVI GTATCC 3 cut(s) 714, 895, 1447
BfaI CTAG 3 cut(s) 54, 288, 759
BfmI CTRYAG 1 cut(s) 378
BfoI RGCGCY 1 cut(s) 646
BfrI CTTAAG 1 cut(s) 1022
BfuI GTATCC 3 cut(s) 714, 895, 1447
BisI GCNGC 9 cut(s) 194, 528, 531, 540, 543, 834, 869, 959, 1185
BlpI GCTNAGC 1 cut(s) 864
BlsI GCNGC 9 cut(s) 195, 529, 532, 541, 544, 835, 870, 960, 1186
BmcAI AGTACT 2 cut(s) 523, 1366
Bme1390I CCNGG 4 cut(s) 158, 390, 909, 1074
BmiI GGNNCC 3 cut(s) 176, 285, 1479
BmrFI CCNGG 4 cut(s) 158, 390, 909, 1074
BmsI GCATC 1 cut(s) 737
Bpu10I CCTNAGC 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 864
Bpu14I TTCGAA 1 cut(s) 560
BpuEI CTTGAG 2 cut(s) 463, 1345
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 6 cut(s) 178, 388, 747, 877, 1155, 1482
Bsc4I CCNNNNNNNGG 3 cut(s) 724, 883, 934
Bse1I ACTGG 1 cut(s) 1355
Bse8I GATNNNNATC 1 cut(s) 627
BseBI CCWGG 4 cut(s) 158, 390, 909, 1074
BseDI CCNNGG 6 cut(s) 178, 388, 747, 877, 1155, 1482
BseGI GGATG 3 cut(s) 954, 1425, 1454
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 3 cut(s) 724, 883, 934
BseMII CTCAG 3 cut(s) 203, 323, 878
BseNI ACTGG 1 cut(s) 1355
BseRI GAGGAG 2 cut(s) 91, 94
BseSI GKGCMC 1 cut(s) 1155
BseXI GCAGC 7 cut(s) 514, 517, 526, 529, 845, 855, 1171
BsgI GTGCAG 2 cut(s) 690, 950
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 183, 876, 912, 953, 1117
BsiHKAI GWGCWC 2 cut(s) 101, 317
BslI CCNNNNNNNGG 3 cut(s) 724, 883, 934
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 5 cut(s) 183, 876, 912, 953, 1117
Bsp119I TTCGAA 1 cut(s) 560
Bsp1286I GDGCHC 3 cut(s) 101, 317, 1155
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 6 cut(s) 201, 392, 628, 685, 772, 920
Bsp1720I GCTNAGC 1 cut(s) 864
BspACI CCGC 3 cut(s) 194, 861, 958
BspANI GGCC 5 cut(s) 183, 876, 912, 953, 1117
BspCNI CTCAG 3 cut(s) 202, 322, 877
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 1125
BspLI GGNNCC 3 cut(s) 176, 285, 1479
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 3 cut(s) 400, 623, 767
BspT104I TTCGAA 1 cut(s) 560
BspTI CTTAAG 1 cut(s) 1022
BsrBI CCGCTC 1 cut(s) 863
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 1 cut(s) 1355
BssECI CCNNGG 6 cut(s) 178, 388, 747, 877, 1155, 1482
BssMI GATC 6 cut(s) 201, 392, 628, 685, 772, 920
BssT1I CCWWGG 4 cut(s) 747, 877, 1155, 1482
Bst2UI CCWGG 4 cut(s) 158, 390, 909, 1074
Bst4CI ACNGT 2 cut(s) 432, 1434
Bst6I CTCTTC 2 cut(s) 112, 1155
BstAFI CTTAAG 1 cut(s) 1022
BstAUI TGTACA 1 cut(s) 417
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 7 cut(s) 97, 185, 317, 382, 1029, 1329, 1383
BstDEI CTNAG 4 cut(s) 189, 234, 309, 864
BstF5I GGATG 3 cut(s) 954, 1425, 1454
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 646
BstHHI GCGC 2 cut(s) 14, 645
BstKTI GATC 6 cut(s) 204, 395, 631, 688, 775, 923
BstMBI GATC 6 cut(s) 201, 392, 628, 685, 772, 920
BstMWI GCNNNNNNNGC 4 cut(s) 193, 536, 539, 964
BstNI CCWGG 4 cut(s) 158, 390, 909, 1074
BstNSI RCATGY 2 cut(s) 200, 424
BstSCI CCNGG 4 cut(s) 156, 388, 907, 1072
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 1155
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 7 cut(s) 514, 517, 526, 529, 845, 855, 1171
BstX2I RGATCY 1 cut(s) 772
BstXI CCANNNNNNTGG 1 cut(s) 639
BstYI RGATCY 1 cut(s) 772
BsuI GTATCC 3 cut(s) 714, 895, 1447
BsuRI GGCC 5 cut(s) 183, 876, 912, 953, 1117
BtsCI GGATG 3 cut(s) 954, 1425, 1454
BtsI GCAGTG 3 cut(s) 228, 644, 673
BtsIMutI CAGTG 3 cut(s) 228, 644, 673
Cac8I GCNNGC 7 cut(s) 97, 185, 317, 382, 1029, 1329, 1383
CaiI CAGNNNCTG 1 cut(s) 401
CciI TCATGA 1 cut(s) 1125
CfoI GCGC 2 cut(s) 14, 645
CseI GACGC 1 cut(s) 594
CsiI ACCWGGT 1 cut(s) 156
Csp6I GTAC 4 cut(s) 266, 418, 522, 1365
CviAII CATG 7 cut(s) 197, 421, 453, 945, 955, 1126, 1343
CviQI GTAC 4 cut(s) 266, 418, 522, 1365
DdeI CTNAG 4 cut(s) 189, 234, 309, 864
DpnI GATC 6 cut(s) 203, 394, 630, 687, 774, 922
DpnII GATC 6 cut(s) 201, 392, 628, 685, 772, 920
DrdI GACNNNNNNGTC 1 cut(s) 1268
DseDI GACNNNNNNGTC 1 cut(s) 1268
EaeI YGGCCR 2 cut(s) 951, 1115
Eam1104I CTCTTC 2 cut(s) 112, 1155
EarI CTCTTC 2 cut(s) 112, 1155
Ecl136II GAGCTC 1 cut(s) 315
Eco130I CCWWGG 4 cut(s) 747, 877, 1155, 1482
Eco24I GRGCYC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 55, 1493
EcoICRI GAGCTC 1 cut(s) 315
EcoRII CCWGG 4 cut(s) 156, 388, 907, 1072
EcoT14I CCWWGG 4 cut(s) 747, 877, 1155, 1482
EcoT38I GRGCYC 1 cut(s) 317
ErhI CCWWGG 4 cut(s) 747, 877, 1155, 1482
FaeI CATG 7 cut(s) 200, 424, 456, 948, 958, 1129, 1346
FatI CATG 7 cut(s) 196, 420, 452, 944, 954, 1125, 1342
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 9 cut(s) 194, 528, 531, 540, 543, 834, 869, 959, 1185
FokI GGATG 3 cut(s) 961, 1412, 1461
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 9 cut(s) 194, 528, 531, 540, 543, 834, 869, 959, 1185
FspBI CTAG 3 cut(s) 54, 288, 759
GlaI GCGC 2 cut(s) 13, 644
GluI GCNGC 9 cut(s) 194, 528, 531, 540, 543, 834, 869, 959, 1185
HaeII RGCGCY 1 cut(s) 646
HaeIII GGCC 5 cut(s) 183, 876, 912, 953, 1117
HgaI GACGC 1 cut(s) 594
HhaI GCGC 2 cut(s) 14, 645
Hin1II CATG 7 cut(s) 200, 424, 456, 948, 958, 1129, 1346
Hin6I GCGC 2 cut(s) 12, 643
HinP1I GCGC 2 cut(s) 12, 643
HindIII AAGCTT 1 cut(s) 1329
HinfI GANTC 5 cut(s) 47, 90, 613, 790, 1122
HphI GGTGA 1 cut(s) 466
Hpy166II GTNNAC 2 cut(s) 485, 1246
Hpy188I TCNGA 6 cut(s) 74, 312, 403, 551, 1191, 1209
Hpy188III TCNNGA 6 cut(s) 54, 87, 350, 813, 899, 1126
Hpy8I GTNNAC 2 cut(s) 485, 1246
HpyAV CCTTC 2 cut(s) 786, 1468
HpyCH4III ACNGT 2 cut(s) 432, 1434
HpyCH4V TGCA 9 cut(s) 262, 380, 452, 653, 671, 806, 967, 1089, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 536, 539, 964
HpyF3I CTNAG 4 cut(s) 189, 234, 309, 864
Hsp92II CATG 7 cut(s) 200, 424, 456, 948, 958, 1129, 1346
HspAI GCGC 2 cut(s) 12, 643
Kzo9I GATC 6 cut(s) 201, 392, 628, 685, 772, 920
LmnI GCTCC 3 cut(s) 104, 575, 1292
Lsp1109I GCAGC 7 cut(s) 514, 517, 526, 529, 845, 855, 1171
LweI GCATC 1 cut(s) 737
MabI ACCWGGT 1 cut(s) 156
MaeI CTAG 3 cut(s) 54, 288, 759
MaeIII GTNAC 9 cut(s) 426, 445, 461, 472, 856, 937, 975, 1259, 1338
MalI GATC 6 cut(s) 203, 394, 630, 687, 774, 922
MbiI CCGCTC 1 cut(s) 863
MboI GATC 6 cut(s) 201, 392, 628, 685, 772, 920
MboII GAAGA 6 cut(s) 42, 99, 854, 1109, 1172, 1418
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 3 cut(s) 101, 317, 1155
MlsI TGGCCA 2 cut(s) 953, 1117
MluCI AATT 8 cut(s) 807, 930, 1004, 1137, 1443, 1464, 1488, 1502
MluNI TGGCCA 2 cut(s) 953, 1117
MmeI TCCRAC 2 cut(s) 562, 1453
Mox20I TGGCCA 2 cut(s) 953, 1117
MscI TGGCCA 2 cut(s) 953, 1117
MseI TTAA 6 cut(s) 360, 1008, 1023, 1197, 1284, 1467
Msp20I TGGCCA 2 cut(s) 953, 1117
MspA1I CMGCKG 1 cut(s) 868
MspCI CTTAAG 1 cut(s) 1022
MspR9I CCNGG 4 cut(s) 158, 390, 909, 1074
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 4 cut(s) 158, 390, 909, 1074
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 193, 536, 539, 964
NdeII GATC 6 cut(s) 201, 392, 628, 685, 772, 920
NlaIII CATG 7 cut(s) 200, 424, 456, 948, 958, 1129, 1346
NlaIV GGNNCC 3 cut(s) 176, 285, 1479
NmuCI GTSAC 3 cut(s) 461, 472, 1259
NspI RCATGY 2 cut(s) 200, 424
NspV TTCGAA 1 cut(s) 560
PagI TCATGA 1 cut(s) 1125
PciI ACATGT 1 cut(s) 420
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 5 cut(s) 47, 90, 613, 790, 1122
PkrI GCNGC 9 cut(s) 195, 529, 532, 541, 544, 835, 870, 960, 1186
PscI ACATGT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 317
Psp6I CCWGG 4 cut(s) 156, 388, 907, 1072
PspGI CCWGG 4 cut(s) 156, 388, 907, 1072
PspN4I GGNNCC 3 cut(s) 176, 285, 1479
PsrI GAACNNNNNNTAC 2 cut(s) 249, 281
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 1 cut(s) 772
PvuII CAGCTG 1 cut(s) 868
RsaI GTAC 4 cut(s) 267, 419, 523, 1366
RsaNI GTAC 4 cut(s) 266, 418, 522, 1365
SacI GAGCTC 1 cut(s) 317
SaqAI TTAA 6 cut(s) 360, 1008, 1023, 1197, 1284, 1467
SatI GCNGC 9 cut(s) 194, 528, 531, 540, 543, 834, 869, 959, 1185
Sau3AI GATC 6 cut(s) 201, 392, 628, 685, 772, 920
SbfI CCTGCAGG 1 cut(s) 382
ScaI AGTACT 2 cut(s) 523, 1366
ScrFI CCNGG 4 cut(s) 158, 390, 909, 1074
SdaI CCTGCAGG 1 cut(s) 382
SduI GDGCHC 3 cut(s) 101, 317, 1155
SexAI ACCWGGT 1 cut(s) 156
SfaNI GCATC 1 cut(s) 737
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 560
SmlI CTYRAG 3 cut(s) 478, 1022, 1360
SmoI CTYRAG 3 cut(s) 478, 1022, 1360
Sse8387I CCTGCAGG 1 cut(s) 382
Sse9I AATT 8 cut(s) 807, 930, 1004, 1137, 1443, 1464, 1488, 1502
SsiI CCGC 3 cut(s) 194, 861, 958
SspMI CTAG 3 cut(s) 54, 288, 759
SstI GAGCTC 1 cut(s) 317
StyD4I CCNGG 4 cut(s) 156, 388, 907, 1072
StyI CCWWGG 4 cut(s) 747, 877, 1155, 1482
TaaI ACNGT 2 cut(s) 432, 1434
TaqI TCGA 6 cut(s) 45, 88, 162, 560, 1013, 1497
TasI AATT 8 cut(s) 807, 930, 1004, 1137, 1443, 1464, 1488, 1502
TatI WGTACW 4 cut(s) 265, 417, 521, 1364
TauI GCSGC 2 cut(s) 196, 961
TfiI GAWTC 5 cut(s) 47, 90, 613, 790, 1122
Tru1I TTAA 6 cut(s) 360, 1008, 1023, 1197, 1284, 1467
Tru9I TTAA 6 cut(s) 360, 1008, 1023, 1197, 1284, 1467
TscAI CASTG 3 cut(s) 235, 644, 673
TseFI GTSAC 3 cut(s) 461, 472, 1259
TseI GCWGC 7 cut(s) 527, 530, 539, 542, 833, 868, 1184
Tsp45I GTSAC 3 cut(s) 461, 472, 1259
TspDTI ATGAA 6 cut(s) 270, 649, 768, 1114, 1414, 1515
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 3 cut(s) 235, 644, 673
Vha464I CTTAAG 1 cut(s) 1022
XapI RAATTY 1 cut(s) 1488
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 2 cut(s) 200, 424
XcmI CCANNNNNNNNNTGG 3 cut(s) 164, 1142, 1436
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 3 cut(s) 54, 288, 759
ZrmI AGTACT 2 cut(s) 523, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.