Rh3DG126100

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012199
Physical Location & Seq
Forward (+)
10683365 .. 10686069
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG126100.1

Sequence Viewer

Length: 1098 bp
ATGCCTTGTTGCGCATTACAGCTATCCCTCCCCATTTATGCTTTCGATTCTTCTAGAAAGACTGCGAACTTCAGACCTTGCCACTCTCGAATCGCGTGCTCCTCCTCTTCTCAATCTGGCATTCGCAAAGATGATGATGATGATGACGACATTGAAAACCAGGTCGATAATGGCAGGAACCGAGGCCAGCCTCAGCCGCATGTGATCTTGGTAGAGAGATATGGAAATGGCACTGCTAAGAGGTATGTGGTAGATGATGAACTGCAAGTACAGACATTTGTAGAGGAACCTAGTTCAAAAGCTAATACATCTCAGAGCTCGCATTTCTCCAATACCGAGTTATCGTGGCTTCCCGATATTGTTAAAGATTTTATCTTTCCTGCAGGCTTCCCAGGATCAGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACCAATGTTACTGCATGGATTTGTCACACTTTAGTCACCTCGAGTCTACTAAAGGCTGTTGGTGTCGGCTCTTTCTCTGGCAGTACTGCTGCTGCTTCGGCTGCTGCTATCAGATGGGTTTCGAAAGATGGAATAGGAGCTGTTGGACGCTTATTTATCGGTGGGCGATTTGGGAATCTTTTTGATGATGATCCAAAGCAGTGGCGCTTATATGCAGACTTCATTGGCAGTGCAGGAAGCATTTTTGATCTTACTACACCATTGTATCCTGCCTATTTCCTGCCATTGGCATCTCTTGGAAATCTTACCAAGGCTGTTGCTAGAGGACTAAAAGATCCTTCATTCCGTGTGATTCAAAGTCATTTTGCAATTTCGGGAAATCTGGGAGATGTAGCAGCAAAGGAAGAAGTTTGGGAAGTAACCGCTCAGCTGCTTGGCCTTGGTTTGGGCATACTTTTTCTGGATACACCTGGCCTTGTAAGATCATACCCAATTCTGGTAGCTACATGGATGGCCATTCGGCTTCTGCACCTCTGGTTACGCTATCAATCTCTATCAGTTCTCCAATTTAACTCGATAAATCTTAAGCGTGCTTGTATATTGGTAAAATCGCACGTATTACACTCTATCGTTCCTGTTTCATTTAGGTATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

365

Amino Acids

40.19

Weight (kDa)

7.07

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 114 - 354 5.6e-67 Vitamin B6 photo-protection and homoeostasis domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01510
fragaria_vesca FvH4_6g11500 FvH4_6g11500 FvH4_6g42101
prunus_persica Prupe.6G276600_v2.0.a1
pyrus_communis pycom04g13740
rosa_chinensis RchiOBHm_Chr3g0463211
rosa_laevigata RLG00000024802
rosa_multiflora Rmu_co8068106.1_g000001 Rmu_co8190904.1_g000001 Rmu_sc0004643.1_g000002
rosa_roxburghii Rroxscaffold_6G00416800
rosa_rugosa Rorug03G0062400
rosa_samantha Rh3AG120600 Rh3BG125000 Rh3CG127100 Rh3DG126100 Rh3DG126200
rosa_wichuraiana Rw3G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 866
AccI GTMKAC 1 cut(s) 487
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 197, 864
AclWI GGATC 3 cut(s) 403, 626, 770
AcoI YGGCCR 1 cut(s) 954
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 3 cut(s) 270, 422, 526
AfiI CCNNNNNNNGG 3 cut(s) 727, 886, 937
AflII CTTAAG 1 cut(s) 1025
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 3 cut(s) 155, 297, 797
AjnI CCWGG 3 cut(s) 159, 391, 910
AluBI AGCT 6 cut(s) 22, 302, 318, 581, 871, 944
AluI AGCT 6 cut(s) 22, 302, 318, 581, 871, 944
Alw21I GWGCWC 2 cut(s) 101, 320
AlwI GGATC 3 cut(s) 403, 626, 770
AlwNI CAGNNNCTG 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 4 cut(s) 184, 877, 913, 954
ApeKI GCWGC 6 cut(s) 530, 533, 542, 545, 836, 871
AspLEI GCGC 2 cut(s) 14, 648
AsuHPI GGTGA 1 cut(s) 469
AsuII TTCGAA 1 cut(s) 563
AvaI CYCGRG 1 cut(s) 481
BaeI ACNNNNGTAYC 2 cut(s) 689, 722
BalI TGGCCA 1 cut(s) 956
BanII GRGCYC 1 cut(s) 320
Bbv12I GWGCWC 2 cut(s) 101, 320
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 6 cut(s) 517, 520, 529, 532, 848, 858
BccI CCATC 3 cut(s) 549, 563, 946
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 3 cut(s) 161, 393, 912
BciVI GTATCC 2 cut(s) 717, 898
BfaI CTAG 3 cut(s) 54, 291, 762
BfmI CTRYAG 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 649
BfrI CTTAAG 1 cut(s) 1025
BfuI GTATCC 2 cut(s) 717, 898
BisI GCNGC 7 cut(s) 197, 531, 534, 543, 546, 837, 872
BlpI GCTNAGC 1 cut(s) 867
BlsI GCNGC 7 cut(s) 198, 532, 535, 544, 547, 838, 873
BmcAI AGTACT 1 cut(s) 526
Bme1390I CCNGG 3 cut(s) 161, 393, 912
BmeT110I CYCGRG 1 cut(s) 481
BmiI GGNNCC 2 cut(s) 179, 288
BmrFI CCNGG 3 cut(s) 161, 393, 912
BmsI GCATC 1 cut(s) 740
Bpu10I CCTNAGC 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 867
Bpu14I TTCGAA 1 cut(s) 563
BsaAI YACGTR 1 cut(s) 1057
BsaBI GATNNNNATC 1 cut(s) 630
BsaJI CCNNGG 4 cut(s) 181, 391, 750, 880
Bsc4I CCNNNNNNNGG 3 cut(s) 727, 886, 937
Bse8I GATNNNNATC 1 cut(s) 630
BseBI CCWGG 3 cut(s) 161, 393, 912
BseDI CCNNGG 4 cut(s) 181, 391, 750, 880
BseGI GGATG 1 cut(s) 957
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 3 cut(s) 727, 886, 937
BseMII CTCAG 3 cut(s) 206, 326, 881
BseRI GAGGAG 2 cut(s) 91, 94
BseXI GCAGC 6 cut(s) 517, 520, 529, 532, 848, 858
BsgI GTGCAG 2 cut(s) 693, 953
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 4 cut(s) 186, 879, 915, 956
BsiHKAI GWGCWC 2 cut(s) 101, 320
BsiHKCI CYCGRG 1 cut(s) 481
BslI CCNNNNNNNGG 3 cut(s) 727, 886, 937
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 4 cut(s) 186, 879, 915, 956
BsoBI CYCGRG 1 cut(s) 481
Bsp119I TTCGAA 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 101, 320
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 6 cut(s) 204, 395, 631, 688, 775, 923
Bsp1720I GCTNAGC 1 cut(s) 867
BspACI CCGC 2 cut(s) 197, 864
BspANI GGCC 4 cut(s) 186, 879, 915, 956
BspCNI CTCAG 3 cut(s) 205, 325, 880
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 179, 288
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 3 cut(s) 403, 626, 770
BspT104I TTCGAA 1 cut(s) 563
BspTI CTTAAG 1 cut(s) 1025
BsrBI CCGCTC 1 cut(s) 866
BsrGI TGTACA 1 cut(s) 420
BssECI CCNNGG 4 cut(s) 181, 391, 750, 880
BssMI GATC 6 cut(s) 204, 395, 631, 688, 775, 923
BssT1I CCWWGG 2 cut(s) 750, 880
Bst2UI CCWGG 3 cut(s) 161, 393, 912
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 1 cut(s) 112
BstAFI CTTAAG 1 cut(s) 1025
BstAUI TGTACA 1 cut(s) 420
BstBAI YACGTR 1 cut(s) 1057
BstBI TTCGAA 1 cut(s) 563
BstC8I GCNNGC 5 cut(s) 97, 188, 320, 385, 1032
BstDEI CTNAG 4 cut(s) 192, 237, 312, 867
BstF5I GGATG 1 cut(s) 957
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 2 cut(s) 14, 648
BstKTI GATC 6 cut(s) 207, 398, 634, 691, 778, 926
BstMBI GATC 6 cut(s) 204, 395, 631, 688, 775, 923
BstMWI GCNNNNNNNGC 3 cut(s) 196, 539, 542
BstNI CCWGG 3 cut(s) 161, 393, 912
BstNSI RCATGY 2 cut(s) 203, 427
BstSCI CCNGG 3 cut(s) 159, 391, 910
BstSFI CTRYAG 1 cut(s) 381
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 6 cut(s) 517, 520, 529, 532, 848, 858
BstX2I RGATCY 1 cut(s) 775
BstXI CCANNNNNNTGG 1 cut(s) 642
BstYI RGATCY 1 cut(s) 775
BsuI GTATCC 2 cut(s) 717, 898
BsuRI GGCC 4 cut(s) 186, 879, 915, 956
BtsCI GGATG 1 cut(s) 957
BtsI GCAGTG 3 cut(s) 231, 647, 676
BtsIMutI CAGTG 3 cut(s) 231, 647, 676
Cac8I GCNNGC 5 cut(s) 97, 188, 320, 385, 1032
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 2 cut(s) 14, 648
CseI GACGC 1 cut(s) 597
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 3 cut(s) 269, 421, 525
CviAII CATG 4 cut(s) 200, 424, 456, 948
CviQI GTAC 3 cut(s) 269, 421, 525
DdeI CTNAG 4 cut(s) 192, 237, 312, 867
DpnI GATC 6 cut(s) 206, 397, 633, 690, 777, 925
DpnII GATC 6 cut(s) 204, 395, 631, 688, 775, 923
EaeI YGGCCR 1 cut(s) 954
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 750, 880
Eco24I GRGCYC 1 cut(s) 320
Eco53kI GAGCTC 1 cut(s) 318
Eco57I CTGAAG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 481
EcoICRI GAGCTC 1 cut(s) 318
EcoRII CCWGG 3 cut(s) 159, 391, 910
EcoT14I CCWWGG 2 cut(s) 750, 880
EcoT38I GRGCYC 1 cut(s) 320
ErhI CCWWGG 2 cut(s) 750, 880
FaeI CATG 4 cut(s) 203, 427, 459, 951
FatI CATG 4 cut(s) 199, 423, 455, 947
FblI GTMKAC 1 cut(s) 487
Fnu4HI GCNGC 7 cut(s) 197, 531, 534, 543, 546, 837, 872
FokI GGATG 1 cut(s) 964
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 7 cut(s) 197, 531, 534, 543, 546, 837, 872
FspBI CTAG 3 cut(s) 54, 291, 762
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 2 cut(s) 13, 647
GluI GCNGC 7 cut(s) 197, 531, 534, 543, 546, 837, 872
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 4 cut(s) 186, 879, 915, 956
HgaI GACGC 1 cut(s) 597
HhaI GCGC 2 cut(s) 14, 648
Hin1II CATG 4 cut(s) 203, 427, 459, 951
Hin6I GCGC 2 cut(s) 12, 646
HinP1I GCGC 2 cut(s) 12, 646
HinfI GANTC 5 cut(s) 47, 90, 484, 616, 793
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 4 cut(s) 74, 315, 406, 554
Hpy188III TCNNGA 5 cut(s) 54, 87, 353, 816, 902
Hpy8I GTNNAC 1 cut(s) 488
HpyAV CCTTC 1 cut(s) 789
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 1056
HpyCH4V TGCA 7 cut(s) 265, 383, 455, 656, 674, 809, 970
HpyF10VI GCNNNNNNNGC 3 cut(s) 196, 539, 542
HpyF3I CTNAG 4 cut(s) 192, 237, 312, 867
HpySE526I ACGT 1 cut(s) 1056
Hsp92II CATG 4 cut(s) 203, 427, 459, 951
HspAI GCGC 2 cut(s) 12, 646
Kzo9I GATC 6 cut(s) 204, 395, 631, 688, 775, 923
LmnI GCTCC 2 cut(s) 104, 578
Lsp1109I GCAGC 6 cut(s) 517, 520, 529, 532, 848, 858
LweI GCATC 1 cut(s) 740
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 3 cut(s) 54, 291, 762
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 6 cut(s) 429, 448, 464, 475, 859, 978
MalI GATC 6 cut(s) 206, 397, 633, 690, 777, 925
MbiI CCGCTC 1 cut(s) 866
MboI GATC 6 cut(s) 204, 395, 631, 688, 775, 923
MboII GAAGA 3 cut(s) 42, 99, 857
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 101, 320
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 3 cut(s) 810, 933, 1007
MluNI TGGCCA 1 cut(s) 956
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 565
Mox20I TGGCCA 1 cut(s) 956
MscI TGGCCA 1 cut(s) 956
MseI TTAA 3 cut(s) 363, 1011, 1026
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 1 cut(s) 871
MspCI CTTAAG 1 cut(s) 1025
MspR9I CCNGG 3 cut(s) 161, 393, 912
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 3 cut(s) 161, 393, 912
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 3 cut(s) 196, 539, 542
NdeII GATC 6 cut(s) 204, 395, 631, 688, 775, 923
NlaIII CATG 4 cut(s) 203, 427, 459, 951
NlaIV GGNNCC 2 cut(s) 179, 288
NmuCI GTSAC 2 cut(s) 464, 475
NsbI TGCGCA 1 cut(s) 13
NspI RCATGY 2 cut(s) 203, 427
NspV TTCGAA 1 cut(s) 563
PaeR7I CTCGAG 1 cut(s) 481
PciI ACATGT 1 cut(s) 423
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 4 cut(s) 47, 90, 616, 793
PkrI GCNGC 7 cut(s) 198, 532, 535, 544, 547, 838, 873
PleI GAGTC 1 cut(s) 492
PpsI GAGTC 1 cut(s) 492
Ppu21I YACGTR 1 cut(s) 1057
PscI ACATGT 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 320
Psp6I CCWGG 3 cut(s) 159, 391, 910
PspGI CCWGG 3 cut(s) 159, 391, 910
PspN4I GGNNCC 2 cut(s) 179, 288
PspXI VCTCGAGB 1 cut(s) 481
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 871
RsaI GTAC 3 cut(s) 270, 422, 526
RsaNI GTAC 3 cut(s) 269, 421, 525
SacI GAGCTC 1 cut(s) 320
SaqAI TTAA 3 cut(s) 363, 1011, 1026
SatI GCNGC 7 cut(s) 197, 531, 534, 543, 546, 837, 872
Sau3AI GATC 6 cut(s) 204, 395, 631, 688, 775, 923
SbfI CCTGCAGG 1 cut(s) 385
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 3 cut(s) 161, 393, 912
SdaI CCTGCAGG 1 cut(s) 385
SduI GDGCHC 2 cut(s) 101, 320
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 1 cut(s) 740
SfcI CTRYAG 1 cut(s) 381
Sfr274I CTCGAG 1 cut(s) 481
SfuI TTCGAA 1 cut(s) 563
SlaI CTCGAG 1 cut(s) 481
SmlI CTYRAG 2 cut(s) 481, 1025
SmoI CTYRAG 2 cut(s) 481, 1025
Sse8387I CCTGCAGG 1 cut(s) 385
Sse9I AATT 3 cut(s) 810, 933, 1007
SsiI CCGC 2 cut(s) 197, 864
SspMI CTAG 3 cut(s) 54, 291, 762
SstI GAGCTC 1 cut(s) 320
StyD4I CCNGG 3 cut(s) 159, 391, 910
StyI CCWWGG 2 cut(s) 750, 880
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 6 cut(s) 45, 88, 165, 482, 563, 1016
TasI AATT 3 cut(s) 810, 933, 1007
TatI WGTACW 3 cut(s) 268, 420, 524
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 4 cut(s) 47, 90, 616, 793
Tru1I TTAA 3 cut(s) 363, 1011, 1026
Tru9I TTAA 3 cut(s) 363, 1011, 1026
TscAI CASTG 3 cut(s) 238, 647, 676
TseFI GTSAC 2 cut(s) 464, 475
TseI GCWGC 6 cut(s) 530, 533, 542, 545, 836, 871
Tsp45I GTSAC 2 cut(s) 464, 475
TspDTI ATGAA 4 cut(s) 273, 652, 771, 1071
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 3 cut(s) 238, 647, 676
Vha464I CTTAAG 1 cut(s) 1025
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 2 cut(s) 203, 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
XhoI CTCGAG 1 cut(s) 481
XmiI GTMKAC 1 cut(s) 487
XspI CTAG 3 cut(s) 54, 291, 762
ZrmI AGTACT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.