Rh3DG126200

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012199
Physical Location & Seq
Forward (+)
10686110 .. 10687052
943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG126200.1

Sequence Viewer

Length: 393 bp
ATGACACCCCAAATTACATTTGGTGTGCCCTTGGAAGAGATGATTTTTGGGGAGAAAGCTGCTCTGATGGTTAAGGCACTTCTGAAACTATATTCAAAGGAGAAGTATATTCTTGTAGTGAACCAACAAAAAAGTGACTTTGAGGTCTTTGTGTCATTTAAGGTGGGAGCTTCAAGTATGTCAGTTTTACGAAGTTTGTGGCAAGCTTATTGGTTACATGAGAACTGGAATAGCTCAAGTACTGCCCTCAAACAGCTTGCACAAAGCCGTTTGGAGATGGAAGATAGGTTTGAGGACTTCATCCAACAGTTGAATGGAATTGGATGGGATACACTTCAAATTAACCTGAAGGTTCCCAAGGAAATTTCCCTCGATGAATTGAACCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

130

Amino Acids

15.0

Weight (kDa)

5.17

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_C PF24160 4 - 117 5.5e-08 Root UVB sensitive protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01510
fragaria_vesca FvH4_6g11500 FvH4_6g11500 FvH4_6g42101
prunus_persica Prupe.6G276600_v2.0.a1
pyrus_communis pycom04g13740
rosa_chinensis RchiOBHm_Chr3g0463211
rosa_laevigata RLG00000024802
rosa_multiflora Rmu_co8068106.1_g000001 Rmu_co8190904.1_g000001 Rmu_sc0004643.1_g000002
rosa_roxburghii Rroxscaffold_6G00416800
rosa_rugosa Rorug03G0062400
rosa_samantha Rh3AG120600 Rh3BG125000 Rh3CG127100 Rh3DG126100 Rh3DG126200
rosa_wichuraiana Rw3G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 5 cut(s) 96, 174, 313, 338, 382
AluBI AGCT 5 cut(s) 59, 170, 206, 234, 256
AluI AGCT 5 cut(s) 59, 170, 206, 234, 256
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 46
BccI CCATC 3 cut(s) 61, 271, 318
BceAI ACGGC 1 cut(s) 252
BciVI GTATCC 1 cut(s) 322
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 220
BsaJI CCNNGG 2 cut(s) 30, 357
Bse1I ACTGG 1 cut(s) 230
BseDI CCNNGG 2 cut(s) 30, 357
BseGI GGATG 2 cut(s) 300, 329
BseNI ACTGG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 30, 357
BssT1I CCWWGG 2 cut(s) 30, 357
Bst4CI ACNGT 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 2 cut(s) 204, 258
BstF5I GGATG 2 cut(s) 300, 329
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 322
BtsCI GGATG 2 cut(s) 300, 329
Cac8I GCNNGC 2 cut(s) 204, 258
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 218
CviJI RGCY 6 cut(s) 59, 170, 206, 234, 256, 267
CviKI_1 RGCY 6 cut(s) 59, 170, 206, 234, 256, 267
CviQI GTAC 1 cut(s) 240
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 30, 357
Eco57I CTGAAG 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 30, 357
ErhI CCWWGG 2 cut(s) 30, 357
FaeI CATG 1 cut(s) 221
FaiI YATR 4 cut(s) 91, 108, 179, 219
FatI CATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 287, 336
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 204
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 66, 84
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 343
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 260
Hsp92II CATG 1 cut(s) 221
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 2 cut(s) 211, 359
Lsp1109I GCAGC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 134, 213
MboII GAAGA 2 cut(s) 47, 293
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 5 cut(s) 12, 318, 339, 363, 377
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 4 cut(s) 136, 257, 286, 380
MseI TTAA 3 cut(s) 72, 159, 342
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 134
PkrI GCNGC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 354
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 3 cut(s) 72, 159, 342
SatI GCNGC 1 cut(s) 60
ScaI AGTACT 1 cut(s) 241
SduI GDGCHC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 5 cut(s) 12, 318, 339, 363, 377
StyI CCWWGG 2 cut(s) 30, 357
TaaI ACNGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 372
TasI AATT 5 cut(s) 12, 318, 339, 363, 377
TatI WGTACW 1 cut(s) 239
Tru1I TTAA 3 cut(s) 72, 159, 342
Tru9I TTAA 3 cut(s) 72, 159, 342
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 289, 390
XapI RAATTY 1 cut(s) 363
XcmI CCANNNNNNNNNTGG 2 cut(s) 17, 311
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.