Rh3CG127100

Vitamin B6 photo-protection and homoeostasis

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
10365976 .. 10369668
3693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG127100.1

Sequence Viewer

Length: 1524 bp
ATGCCTTGTTGCGCATTACAGCTATCCCTCCCCATTTATGCTTTCGATTCTTCTAGAAAGACTGCGAACTTCAGACCTTGCCACTCTCGAATCGCGTGCTCCTCCTCTTCTCAATCTGGCATTCGCAAAGATGATGATGATGATGACGACGACATTGAAAACCAGGTCGATAATGGCAGGAACCGAGGCCAGCCTCAGCCGCATGTGATATTGGTAGAGAGATATGGAAATGGCACTGCTAAGAGGTATGTGGTAGATGATGAACTGCAAGTACAGACATTTGTAGAGGAACCTAGTTCAAAAGCTAATACATCTCAGAGCTCGCATTTCTCCAATACCGAGTTATCGTGGCTTCCCGATATTGTTAAAGATTTTATCTTTCCTGCAGGCTTCCCAGGATCAGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACCAATGTTACTGCATGGATTTGTCACACTTTAGTCACCTCAAGTCTACTAAAGGCTGTTGGTGTCGGCTCTTTCTCTGGCAGTACTGCTGCTGCTTCGGCTGCTGCTATCAGATGGGTTTCGAAAGATGGAATAGGAGCTGTTGGACGCTTATTTATCGGTGGGCGATTTGGGAATCTTTTTGATGATGATCCAAAGCAGTGGCGCTTATATGCAGACTTCATTGGCAGTGCAGGAAGCATTTTTGATCTTACTACACCATTGTATCCTGCCTATTTCCTGCCATTGGCATCTCTTGGAAATCTTACCAAGGCTGTTGCTAGAGGACTAAAAGATCCTTCATTCCGTGTGATTCAAAGTCATTTTGCAATTTCGGGAAATCTGGGAGATGTAGCAGCAAAGGAAGAAGTTTGGGAAGTAACCGCTCAGCTGCTTGGCCTTGGTTTGGGCATACTTTTTCTGGATACACCTGGCCTTGTAAGATCATACCCAATTCTGGTAACTACATGGATGGCCATGCGGCTTCTGCACCTCTGGTTACGCTATCAATCTCTATCAGTTCTCCAATTTAACTCGATAAATCTTAAGCGTGCTTGTATATTGGTAAAATCGCACATATTACACTCTATCGTTCCTGGTATCGTTAGTTGCAATAAGGAAGAAAACATATTATTGTGGCCAAGATTCATGACACCCCAAATTACATTTGGTGTGCCCTTGGAAGAGATGATTTTTGGGGAGAAAGCTGCTCTGATGGTTAAGGCACTTCTGAAACTATATTCAAAGGAGAAGTATATTCTTGTAGTGAACCAACAAAAAAGTGACTTTGAGGTCTTTGTGTCATTTAAGGTGGGAGCTTCAAGTATGTCAGTTTTACGAAGTTTGTGGCAAGCTTATTGGTTACATGAGAACTGGAATAGCTCAAGTACTGCCCTCAAACAGCTTGCACAAAGCCGTTTGGAGATGGAAGATAGGTTTGAGGACTTCATCCAACAGTTGAATGGAATTGGATGGGATACACTTCAAATTAACCTGAAGGTTCCCAAGGAAATTTCCCTCGATGAATTGAACCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

507

Amino Acids

56.54

Weight (kDa)

5.9

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 115 - 355 8.9e-67 Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C PF24160 363 - 494 1.6e-08 Root UVB sensitive protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012199)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1274
Acc16I TGCGCA 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 869
AccI GTMKAC 1 cut(s) 490
AccII CGCG 1 cut(s) 95
AciI CCGC 3 cut(s) 200, 867, 964
AclWI GGATC 3 cut(s) 406, 629, 773
AcoI YGGCCR 2 cut(s) 957, 1121
AcsI RAATTY 1 cut(s) 1494
AcuI CTGAAG 2 cut(s) 55, 1499
AfaI GTAC 4 cut(s) 273, 425, 529, 1372
AfiI CCNNNNNNNGG 3 cut(s) 730, 889, 940
AflII CTTAAG 1 cut(s) 1028
AflIII ACRYGT 1 cut(s) 426
AgsI TTSAA 8 cut(s) 158, 300, 800, 1227, 1305, 1444, 1469, 1513
AjnI CCWGG 4 cut(s) 162, 394, 913, 1078
Alw21I GWGCWC 2 cut(s) 101, 323
AlwI GGATC 3 cut(s) 406, 629, 773
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 5 cut(s) 187, 880, 916, 957, 1121
ApeKI GCWGC 7 cut(s) 533, 536, 545, 548, 839, 874, 1190
ApoI RAATTY 1 cut(s) 1494
AspLEI GCGC 2 cut(s) 14, 651
AsuHPI GGTGA 1 cut(s) 472
AsuII TTCGAA 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 1161
BaeI ACNNNNGTAYC 2 cut(s) 692, 725
BalI TGGCCA 2 cut(s) 959, 1123
BanII GRGCYC 1 cut(s) 323
Bbv12I GWGCWC 2 cut(s) 101, 323
BbvCI CCTCAGC 1 cut(s) 195
BbvI GCAGC 7 cut(s) 520, 523, 532, 535, 851, 861, 1177
BccI CCATC 6 cut(s) 552, 566, 949, 1192, 1402, 1449
BceAI ACGGC 1 cut(s) 1383
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 4 cut(s) 164, 396, 915, 1080
BciVI GTATCC 3 cut(s) 720, 901, 1453
BfaI CTAG 3 cut(s) 54, 294, 765
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 652
BfrI CTTAAG 1 cut(s) 1028
BfuI GTATCC 3 cut(s) 720, 901, 1453
BisI GCNGC 9 cut(s) 200, 534, 537, 546, 549, 840, 875, 965, 1191
BlpI GCTNAGC 1 cut(s) 870
BlsI GCNGC 9 cut(s) 201, 535, 538, 547, 550, 841, 876, 966, 1192
BmcAI AGTACT 2 cut(s) 529, 1372
Bme1390I CCNGG 4 cut(s) 164, 396, 915, 1080
BmiI GGNNCC 3 cut(s) 182, 291, 1485
BmrFI CCNGG 4 cut(s) 164, 396, 915, 1080
BmsI GCATC 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 469, 1351
BsaBI GATNNNNATC 1 cut(s) 633
BsaJI CCNNGG 6 cut(s) 184, 394, 753, 883, 1161, 1488
Bsc4I CCNNNNNNNGG 3 cut(s) 730, 889, 940
Bse1I ACTGG 1 cut(s) 1361
Bse8I GATNNNNATC 1 cut(s) 633
BseBI CCWGG 4 cut(s) 164, 396, 915, 1080
BseDI CCNNGG 6 cut(s) 184, 394, 753, 883, 1161, 1488
BseGI GGATG 3 cut(s) 960, 1431, 1460
BseJI GATNNNNATC 1 cut(s) 633
BseLI CCNNNNNNNGG 3 cut(s) 730, 889, 940
BseMII CTCAG 3 cut(s) 209, 329, 884
BseNI ACTGG 1 cut(s) 1361
BseRI GAGGAG 2 cut(s) 91, 94
BseSI GKGCMC 1 cut(s) 1161
BseXI GCAGC 7 cut(s) 520, 523, 532, 535, 851, 861, 1177
BsgI GTGCAG 2 cut(s) 696, 956
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 189, 882, 918, 959, 1123
BsiHKAI GWGCWC 2 cut(s) 101, 323
BslI CCNNNNNNNGG 3 cut(s) 730, 889, 940
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 5 cut(s) 189, 882, 918, 959, 1123
Bsp119I TTCGAA 1 cut(s) 566
Bsp1286I GDGCHC 3 cut(s) 101, 323, 1161
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 5 cut(s) 398, 634, 691, 778, 926
Bsp1720I GCTNAGC 1 cut(s) 870
BspACI CCGC 3 cut(s) 200, 867, 964
BspANI GGCC 5 cut(s) 189, 882, 918, 959, 1123
BspCNI CTCAG 3 cut(s) 208, 328, 883
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 1131
BspLI GGNNCC 3 cut(s) 182, 291, 1485
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 3 cut(s) 406, 629, 773
BspT104I TTCGAA 1 cut(s) 566
BspTI CTTAAG 1 cut(s) 1028
BsrBI CCGCTC 1 cut(s) 869
BsrGI TGTACA 1 cut(s) 423
BsrI ACTGG 1 cut(s) 1361
BssECI CCNNGG 6 cut(s) 184, 394, 753, 883, 1161, 1488
BssMI GATC 5 cut(s) 398, 634, 691, 778, 926
BssT1I CCWWGG 4 cut(s) 753, 883, 1161, 1488
Bst2UI CCWGG 4 cut(s) 164, 396, 915, 1080
Bst4CI ACNGT 2 cut(s) 438, 1440
Bst6I CTCTTC 2 cut(s) 112, 1161
BstAFI CTTAAG 1 cut(s) 1028
BstAUI TGTACA 1 cut(s) 423
BstBI TTCGAA 1 cut(s) 566
BstC8I GCNNGC 7 cut(s) 97, 191, 323, 388, 1035, 1335, 1389
BstDEI CTNAG 4 cut(s) 195, 240, 315, 870
BstF5I GGATG 3 cut(s) 960, 1431, 1460
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 652
BstHHI GCGC 2 cut(s) 14, 651
BstKTI GATC 5 cut(s) 401, 637, 694, 781, 929
BstMBI GATC 5 cut(s) 398, 634, 691, 778, 926
BstMWI GCNNNNNNNGC 4 cut(s) 199, 542, 545, 970
BstNI CCWGG 4 cut(s) 164, 396, 915, 1080
BstNSI RCATGY 2 cut(s) 206, 430
BstSCI CCNGG 4 cut(s) 162, 394, 913, 1078
BstSFI CTRYAG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 1161
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 7 cut(s) 520, 523, 532, 535, 851, 861, 1177
BstX2I RGATCY 1 cut(s) 778
BstXI CCANNNNNNTGG 1 cut(s) 645
BstYI RGATCY 1 cut(s) 778
BsuI GTATCC 3 cut(s) 720, 901, 1453
BsuRI GGCC 5 cut(s) 189, 882, 918, 959, 1123
BtsCI GGATG 3 cut(s) 960, 1431, 1460
BtsI GCAGTG 3 cut(s) 234, 650, 679
BtsIMutI CAGTG 3 cut(s) 234, 650, 679
Cac8I GCNNGC 7 cut(s) 97, 191, 323, 388, 1035, 1335, 1389
CaiI CAGNNNCTG 1 cut(s) 407
CciI TCATGA 1 cut(s) 1131
CfoI GCGC 2 cut(s) 14, 651
CseI GACGC 1 cut(s) 600
CsiI ACCWGGT 1 cut(s) 162
Csp6I GTAC 4 cut(s) 272, 424, 528, 1371
CviAII CATG 7 cut(s) 203, 427, 459, 951, 961, 1132, 1349
CviQI GTAC 4 cut(s) 272, 424, 528, 1371
DdeI CTNAG 4 cut(s) 195, 240, 315, 870
DpnI GATC 5 cut(s) 400, 636, 693, 780, 928
DpnII GATC 5 cut(s) 398, 634, 691, 778, 926
DrdI GACNNNNNNGTC 1 cut(s) 1274
DseDI GACNNNNNNGTC 1 cut(s) 1274
EaeI YGGCCR 2 cut(s) 957, 1121
Eam1104I CTCTTC 2 cut(s) 112, 1161
EarI CTCTTC 2 cut(s) 112, 1161
Ecl136II GAGCTC 1 cut(s) 321
Eco130I CCWWGG 4 cut(s) 753, 883, 1161, 1488
Eco24I GRGCYC 1 cut(s) 323
Eco53kI GAGCTC 1 cut(s) 321
Eco57I CTGAAG 2 cut(s) 55, 1499
EcoICRI GAGCTC 1 cut(s) 321
EcoRII CCWGG 4 cut(s) 162, 394, 913, 1078
EcoT14I CCWWGG 4 cut(s) 753, 883, 1161, 1488
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 4 cut(s) 753, 883, 1161, 1488
FaeI CATG 7 cut(s) 206, 430, 462, 954, 964, 1135, 1352
FatI CATG 7 cut(s) 202, 426, 458, 950, 960, 1131, 1348
FblI GTMKAC 1 cut(s) 490
Fnu4HI GCNGC 9 cut(s) 200, 534, 537, 546, 549, 840, 875, 965, 1191
FokI GGATG 3 cut(s) 967, 1418, 1467
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 9 cut(s) 200, 534, 537, 546, 549, 840, 875, 965, 1191
FspBI CTAG 3 cut(s) 54, 294, 765
FspI TGCGCA 1 cut(s) 13
GlaI GCGC 2 cut(s) 13, 650
GluI GCNGC 9 cut(s) 200, 534, 537, 546, 549, 840, 875, 965, 1191
HaeII RGCGCY 1 cut(s) 652
HaeIII GGCC 5 cut(s) 189, 882, 918, 959, 1123
HgaI GACGC 1 cut(s) 600
HhaI GCGC 2 cut(s) 14, 651
Hin1II CATG 7 cut(s) 206, 430, 462, 954, 964, 1135, 1352
Hin6I GCGC 2 cut(s) 12, 649
HinP1I GCGC 2 cut(s) 12, 649
HindIII AAGCTT 1 cut(s) 1335
HinfI GANTC 5 cut(s) 47, 90, 619, 796, 1128
HphI GGTGA 1 cut(s) 472
Hpy166II GTNNAC 2 cut(s) 491, 1252
Hpy188I TCNGA 6 cut(s) 74, 318, 409, 557, 1197, 1215
Hpy188III TCNNGA 6 cut(s) 54, 87, 356, 819, 905, 1132
Hpy8I GTNNAC 2 cut(s) 491, 1252
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 792, 1474
HpyCH4III ACNGT 2 cut(s) 438, 1440
HpyCH4V TGCA 9 cut(s) 268, 386, 458, 659, 677, 812, 973, 1095, 1391
HpyF10VI GCNNNNNNNGC 4 cut(s) 199, 542, 545, 970
HpyF3I CTNAG 4 cut(s) 195, 240, 315, 870
Hsp92II CATG 7 cut(s) 206, 430, 462, 954, 964, 1135, 1352
HspAI GCGC 2 cut(s) 12, 649
Kzo9I GATC 5 cut(s) 398, 634, 691, 778, 926
LmnI GCTCC 3 cut(s) 104, 581, 1298
Lsp1109I GCAGC 7 cut(s) 520, 523, 532, 535, 851, 861, 1177
LweI GCATC 1 cut(s) 743
MabI ACCWGGT 1 cut(s) 162
MaeI CTAG 3 cut(s) 54, 294, 765
MaeIII GTNAC 9 cut(s) 432, 451, 467, 478, 862, 943, 981, 1265, 1344
MalI GATC 5 cut(s) 400, 636, 693, 780, 928
MbiI CCGCTC 1 cut(s) 869
MboI GATC 5 cut(s) 398, 634, 691, 778, 926
MboII GAAGA 6 cut(s) 42, 99, 860, 1115, 1178, 1424
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 3 cut(s) 101, 323, 1161
MlsI TGGCCA 2 cut(s) 959, 1123
MluCI AATT 8 cut(s) 813, 936, 1010, 1143, 1449, 1470, 1494, 1508
MluNI TGGCCA 2 cut(s) 959, 1123
MmeI TCCRAC 2 cut(s) 568, 1459
Mox20I TGGCCA 2 cut(s) 959, 1123
MscI TGGCCA 2 cut(s) 959, 1123
MseI TTAA 6 cut(s) 366, 1014, 1029, 1203, 1290, 1473
Msp20I TGGCCA 2 cut(s) 959, 1123
MspA1I CMGCKG 1 cut(s) 874
MspCI CTTAAG 1 cut(s) 1028
MspR9I CCNGG 4 cut(s) 164, 396, 915, 1080
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 4 cut(s) 164, 396, 915, 1080
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 199, 542, 545, 970
NdeII GATC 5 cut(s) 398, 634, 691, 778, 926
NlaIII CATG 7 cut(s) 206, 430, 462, 954, 964, 1135, 1352
NlaIV GGNNCC 3 cut(s) 182, 291, 1485
NmuCI GTSAC 3 cut(s) 467, 478, 1265
NsbI TGCGCA 1 cut(s) 13
NspI RCATGY 2 cut(s) 206, 430
NspV TTCGAA 1 cut(s) 566
PagI TCATGA 1 cut(s) 1131
PciI ACATGT 1 cut(s) 426
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 5 cut(s) 47, 90, 619, 796, 1128
PkrI GCNGC 9 cut(s) 201, 535, 538, 547, 550, 841, 876, 966, 1192
PscI ACATGT 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 323
Psp6I CCWGG 4 cut(s) 162, 394, 913, 1078
PspGI CCWGG 4 cut(s) 162, 394, 913, 1078
PspN4I GGNNCC 3 cut(s) 182, 291, 1485
PsrI GAACNNNNNNTAC 2 cut(s) 255, 287
PstI CTGCAG 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 778
PvuII CAGCTG 1 cut(s) 874
RsaI GTAC 4 cut(s) 273, 425, 529, 1372
RsaNI GTAC 4 cut(s) 272, 424, 528, 1371
SacI GAGCTC 1 cut(s) 323
SaqAI TTAA 6 cut(s) 366, 1014, 1029, 1203, 1290, 1473
SatI GCNGC 9 cut(s) 200, 534, 537, 546, 549, 840, 875, 965, 1191
Sau3AI GATC 5 cut(s) 398, 634, 691, 778, 926
SbfI CCTGCAGG 1 cut(s) 388
ScaI AGTACT 2 cut(s) 529, 1372
ScrFI CCNGG 4 cut(s) 164, 396, 915, 1080
SdaI CCTGCAGG 1 cut(s) 388
SduI GDGCHC 3 cut(s) 101, 323, 1161
SexAI ACCWGGT 1 cut(s) 162
SfaNI GCATC 1 cut(s) 743
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 1 cut(s) 566
SmlI CTYRAG 3 cut(s) 484, 1028, 1366
SmoI CTYRAG 3 cut(s) 484, 1028, 1366
Sse8387I CCTGCAGG 1 cut(s) 388
Sse9I AATT 8 cut(s) 813, 936, 1010, 1143, 1449, 1470, 1494, 1508
SsiI CCGC 3 cut(s) 200, 867, 964
SspMI CTAG 3 cut(s) 54, 294, 765
SstI GAGCTC 1 cut(s) 323
StyD4I CCNGG 4 cut(s) 162, 394, 913, 1078
StyI CCWWGG 4 cut(s) 753, 883, 1161, 1488
TaaI ACNGT 2 cut(s) 438, 1440
TaqI TCGA 6 cut(s) 45, 88, 168, 566, 1019, 1503
TasI AATT 8 cut(s) 813, 936, 1010, 1143, 1449, 1470, 1494, 1508
TatI WGTACW 4 cut(s) 271, 423, 527, 1370
TauI GCSGC 2 cut(s) 202, 967
TfiI GAWTC 5 cut(s) 47, 90, 619, 796, 1128
Tru1I TTAA 6 cut(s) 366, 1014, 1029, 1203, 1290, 1473
Tru9I TTAA 6 cut(s) 366, 1014, 1029, 1203, 1290, 1473
TscAI CASTG 3 cut(s) 241, 650, 679
TseFI GTSAC 3 cut(s) 467, 478, 1265
TseI GCWGC 7 cut(s) 533, 536, 545, 548, 839, 874, 1190
Tsp45I GTSAC 3 cut(s) 467, 478, 1265
TspDTI ATGAA 6 cut(s) 276, 655, 774, 1120, 1420, 1521
TspGWI ACGGA 1 cut(s) 779
TspRI CASTG 3 cut(s) 241, 650, 679
Vha464I CTTAAG 1 cut(s) 1028
XapI RAATTY 1 cut(s) 1494
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 2 cut(s) 206, 430
XcmI CCANNNNNNNNNTGG 3 cut(s) 170, 1148, 1442
XmiI GTMKAC 1 cut(s) 490
XspI CTAG 3 cut(s) 54, 294, 765
ZrmI AGTACT 2 cut(s) 529, 1372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.