RLG00000024802

Vitamin B6 photo-protection and homoeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012199
Physical Location & Seq
Reverse (-)
39219246 .. 39222894
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024802

Sequence Viewer

Length: 1512 bp
ATGCCTTGTTGCGCTCTACAGCTATCCCTCCCCATTTATGCTTTCGATTCTTCCAGAAAGACTGCGAACCTCAGACCTTGCCACTCTCGAATCGCGTGCTCCTCCTCTTCTCAATCTGGCATTCGCAAAGATGATGGTGACATTGAAAACCAGGTCGATAATGGCAGGAACCAAGGCCAGCCTCAGCCGCATGTGATCTTGGTAGAGAGATATGGAAATGGCACTGCTAAGAGGTATGTGGTAGATGATGAACTGCAAGTACAGACATTTGTAGAGGAACCTAGTTCAAAAGCTAATACATCTCAGAGCTCGCATTTCTCCAATACTGAGTTATCGTGGCTTCCCGATATTGTTAAAGATTTTATACTTCCTGCAGGCTTCCCAGGATCAGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACCAATATTACTGCATGGATTTGTCACACTTTAGTCACCTCAAGTCTACTAAAGGCTGTTGGTGTTGGCTCTTTCTCTGGCAGTACTGTTGCTGCTTCAGCTGCTGCTATCAGATGGGTTTCAAAAGATGGAATAGGAGCTGTTGGACGCTTATTTATCGGTGGGCGGTTTGGGAATCTTTTTGATGATGATCCAAAGCAGTGGCGCTTATATGCAGACTTCATTGGCAGTGCAGGAAGCATTTTTGATCTTACTACACCGTTGTATCCTGCCTATTTCCTGCCATTGGCATCTCTTGGAAATCTTACCAAGGCTGTTGCTAGAGGACTAAAAGATCCTTCATTCCGTGTGATTCAAAGTCATTTTGCAATTTCGGGAAATCTGGGAGATGTAGCAGCAAAGGAAGAGGTTTGGGAAGTAACCGCTCAGCTGCTTGGCCTTGGTTTGGGCATACTTTTTCTGGATACACCTGGCCTTGTAAGATCATACCCAATTCTGGTAGCTACATGGATGGCCATGCGGCTTCTGCACCTCTGGTTACGCTATCAATCGCTATCAGTTCTCCAATTTAACTCAATAAATCTTAAGCGTGCTTGTATATTGGTAAAATCGCATGTATTACACTCTATCGTTCCTGGTATCGTTAGTTGCAATAAGGAAGAAAGCATATTATTGTGGCCAAGATTCATGACACCACGAATTACATTTGGTGTGCCCTTGGAAGAGATGATTTTTGGGGAGAAAGCTGCTCCAATGGTTAAGGCACTTCTGAAACTATATTCAGAGGAGAAGTATATTCTTGTAGTGAACCAACAAAAAAGTGACTTTGAGGTCTTTGTGTCATTTAAGGTGGGAGCTTCAAGTATGTCAGTTTTACGAAGTTTGTGGCAAGCTTATTGGTTACATGAGAACTGGAATAGCTCAAGTATTGCCCTTGAACATCTTGCACAAAGCCGTTTGGAGATGGAAGATAGGTTTGAGGACTTCGTCCAACAGTTGAATGGAATTGGATGGGATACACTTCAAATTAACCTGAAGGTTCCCAAGGAAATTTCCCTCGATGAATTGAACCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF647

Protein Analysis

504

Amino Acids

55.91

Weight (kDa)

6.09

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 111 - 351 1.6e-66 Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C PF24160 358 - 490 2e-08 Root UVB sensitive protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012199)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01510
fragaria_vesca FvH4_6g11500 FvH4_6g11500 FvH4_6g42101
prunus_persica Prupe.6G276600_v2.0.a1
pyrus_communis pycom04g13740
rosa_chinensis RchiOBHm_Chr3g0463211
rosa_laevigata RLG00000024802
rosa_multiflora Rmu_co8068106.1_g000001 Rmu_co8190904.1_g000001 Rmu_sc0004643.1_g000002
rosa_roxburghii Rroxscaffold_6G00416800
rosa_rugosa Rorug03G0062400
rosa_samantha Rh3AG120600 Rh3BG125000 Rh3CG127100 Rh3DG126100 Rh3DG126200
rosa_wichuraiana Rw3G010240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1262
AccBSI CCGCTC 1 cut(s) 857
AccI GTMKAC 1 cut(s) 478
AccII CGCG 1 cut(s) 95
AciI CCGC 4 cut(s) 188, 598, 855, 952
AclWI GGATC 3 cut(s) 394, 617, 761
AcoI YGGCCR 2 cut(s) 945, 1109
AcsI RAATTY 1 cut(s) 1482
AcuI CTGAAG 2 cut(s) 513, 1487
AfaI GTAC 3 cut(s) 261, 413, 517
AfiI CCNNNNNNNGG 3 cut(s) 718, 877, 928
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 9 cut(s) 146, 288, 555, 788, 1293, 1370, 1432, 1457, 1501
AjnI CCWGG 4 cut(s) 150, 382, 901, 1066
Alw21I GWGCWC 2 cut(s) 101, 311
AlwI GGATC 3 cut(s) 394, 617, 761
AlwNI CAGNNNCTG 2 cut(s) 395, 536
AoxI GGCC 5 cut(s) 175, 868, 904, 945, 1109
ApeKI GCWGC 6 cut(s) 524, 533, 536, 827, 862, 1178
ApoI RAATTY 1 cut(s) 1482
AspLEI GCGC 2 cut(s) 14, 639
AsuHPI GGTGA 2 cut(s) 149, 460
BaeGI GKGCMC 1 cut(s) 1149
BaeI ACNNNNGTAYC 2 cut(s) 680, 713
BalI TGGCCA 2 cut(s) 947, 1111
BanII GRGCYC 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 101, 311
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 6 cut(s) 511, 520, 523, 839, 849, 1165
BccI CCATC 6 cut(s) 128, 540, 554, 937, 1390, 1437
BceAI ACGGC 1 cut(s) 1371
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 4 cut(s) 152, 384, 903, 1068
BciVI GTATCC 3 cut(s) 708, 889, 1441
BfaI CTAG 2 cut(s) 282, 753
BfmI CTRYAG 2 cut(s) 17, 372
BfoI RGCGCY 1 cut(s) 640
BfrI CTTAAG 1 cut(s) 1016
BfuI GTATCC 3 cut(s) 708, 889, 1441
BisI GCNGC 8 cut(s) 188, 525, 534, 537, 828, 863, 953, 1179
BlpI GCTNAGC 1 cut(s) 858
BlsI GCNGC 8 cut(s) 189, 526, 535, 538, 829, 864, 954, 1180
BmcAI AGTACT 1 cut(s) 517
Bme1390I CCNGG 4 cut(s) 152, 384, 903, 1068
BmiI GGNNCC 3 cut(s) 170, 279, 1473
BmrFI CCNGG 4 cut(s) 152, 384, 903, 1068
BmsI GCATC 1 cut(s) 731
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 858
BpuEI CTTGAG 2 cut(s) 457, 1339
BsaBI GATNNNNATC 1 cut(s) 621
BsaJI CCNNGG 6 cut(s) 172, 382, 741, 871, 1149, 1476
Bsc4I CCNNNNNNNGG 3 cut(s) 718, 877, 928
Bse1I ACTGG 1 cut(s) 1349
Bse8I GATNNNNATC 1 cut(s) 621
BseBI CCWGG 4 cut(s) 152, 384, 903, 1068
BseDI CCNNGG 6 cut(s) 172, 382, 741, 871, 1149, 1476
BseGI GGATG 2 cut(s) 948, 1448
BseJI GATNNNNATC 1 cut(s) 621
BseLI CCNNNNNNNGG 3 cut(s) 718, 877, 928
BseMII CTCAG 5 cut(s) 85, 197, 317, 318, 872
BseNI ACTGG 1 cut(s) 1349
BseRI GAGGAG 3 cut(s) 91, 94, 1232
BseSI GKGCMC 1 cut(s) 1149
BseXI GCAGC 6 cut(s) 511, 520, 523, 839, 849, 1165
BsgI GTGCAG 2 cut(s) 684, 944
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 177, 870, 906, 947, 1111
BsiHKAI GWGCWC 2 cut(s) 101, 311
BslI CCNNNNNNNGG 3 cut(s) 718, 877, 928
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 5 cut(s) 177, 870, 906, 947, 1111
Bsp1286I GDGCHC 3 cut(s) 101, 311, 1149
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 6 cut(s) 195, 386, 622, 679, 766, 914
Bsp1720I GCTNAGC 1 cut(s) 858
BspACI CCGC 4 cut(s) 188, 598, 855, 952
BspANI GGCC 5 cut(s) 177, 870, 906, 947, 1111
BspCNI CTCAG 5 cut(s) 84, 196, 316, 319, 871
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 1119
BspLI GGNNCC 3 cut(s) 170, 279, 1473
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 3 cut(s) 394, 617, 761
BspTI CTTAAG 1 cut(s) 1016
BsrBI CCGCTC 1 cut(s) 857
BsrGI TGTACA 1 cut(s) 411
BsrI ACTGG 1 cut(s) 1349
BssECI CCNNGG 6 cut(s) 172, 382, 741, 871, 1149, 1476
BssMI GATC 6 cut(s) 195, 386, 622, 679, 766, 914
BssT1I CCWWGG 5 cut(s) 172, 741, 871, 1149, 1476
Bst2UI CCWGG 4 cut(s) 152, 384, 903, 1068
Bst4CI ACNGT 4 cut(s) 426, 520, 693, 1428
Bst6I CTCTTC 3 cut(s) 112, 831, 1149
BstAFI CTTAAG 1 cut(s) 1016
BstAUI TGTACA 1 cut(s) 411
BstC8I GCNNGC 6 cut(s) 97, 179, 311, 376, 1023, 1323
BstDEI CTNAG 6 cut(s) 71, 183, 228, 303, 327, 858
BstF5I GGATG 2 cut(s) 948, 1448
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 2 cut(s) 14, 639
BstKTI GATC 6 cut(s) 198, 389, 625, 682, 769, 917
BstMBI GATC 6 cut(s) 195, 386, 622, 679, 766, 914
BstMWI GCNNNNNNNGC 4 cut(s) 187, 530, 533, 958
BstNI CCWGG 4 cut(s) 152, 384, 903, 1068
BstNSI RCATGY 3 cut(s) 194, 418, 1049
BstSCI CCNGG 4 cut(s) 150, 382, 901, 1066
BstSFI CTRYAG 2 cut(s) 17, 372
BstSLI GKGCMC 1 cut(s) 1149
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 6 cut(s) 511, 520, 523, 839, 849, 1165
BstX2I RGATCY 1 cut(s) 766
BstXI CCANNNNNNTGG 1 cut(s) 633
BstYI RGATCY 1 cut(s) 766
BsuI GTATCC 3 cut(s) 708, 889, 1441
BsuRI GGCC 5 cut(s) 177, 870, 906, 947, 1111
BtsCI GGATG 2 cut(s) 948, 1448
BtsI GCAGTG 3 cut(s) 222, 638, 667
BtsIMutI CAGTG 3 cut(s) 222, 638, 667
Cac8I GCNNGC 6 cut(s) 97, 179, 311, 376, 1023, 1323
CaiI CAGNNNCTG 2 cut(s) 395, 536
CciI TCATGA 1 cut(s) 1119
CfoI GCGC 2 cut(s) 14, 639
CseI GACGC 1 cut(s) 588
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 3 cut(s) 260, 412, 516
CviAII CATG 8 cut(s) 191, 415, 447, 939, 949, 1046, 1120, 1337
CviQI GTAC 3 cut(s) 260, 412, 516
DdeI CTNAG 6 cut(s) 71, 183, 228, 303, 327, 858
DpnI GATC 6 cut(s) 197, 388, 624, 681, 768, 916
DpnII GATC 6 cut(s) 195, 386, 622, 679, 766, 914
DrdI GACNNNNNNGTC 1 cut(s) 1262
DseDI GACNNNNNNGTC 1 cut(s) 1262
EaeI YGGCCR 2 cut(s) 945, 1109
Eam1104I CTCTTC 3 cut(s) 112, 831, 1149
EarI CTCTTC 3 cut(s) 112, 831, 1149
Ecl136II GAGCTC 1 cut(s) 309
Eco130I CCWWGG 5 cut(s) 172, 741, 871, 1149, 1476
Eco24I GRGCYC 1 cut(s) 311
Eco53kI GAGCTC 1 cut(s) 309
Eco57I CTGAAG 2 cut(s) 513, 1487
EcoICRI GAGCTC 1 cut(s) 309
EcoRII CCWGG 4 cut(s) 150, 382, 901, 1066
EcoT14I CCWWGG 5 cut(s) 172, 741, 871, 1149, 1476
EcoT38I GRGCYC 1 cut(s) 311
ErhI CCWWGG 5 cut(s) 172, 741, 871, 1149, 1476
FaeI CATG 8 cut(s) 194, 418, 450, 942, 952, 1049, 1123, 1340
FatI CATG 8 cut(s) 190, 414, 446, 938, 948, 1045, 1119, 1336
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 8 cut(s) 188, 525, 534, 537, 828, 863, 953, 1179
FokI GGATG 2 cut(s) 955, 1455
FriOI GRGCYC 1 cut(s) 311
Fsp4HI GCNGC 8 cut(s) 188, 525, 534, 537, 828, 863, 953, 1179
FspBI CTAG 2 cut(s) 282, 753
GlaI GCGC 2 cut(s) 13, 638
GluI GCNGC 8 cut(s) 188, 525, 534, 537, 828, 863, 953, 1179
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 5 cut(s) 177, 870, 906, 947, 1111
HgaI GACGC 1 cut(s) 588
HhaI GCGC 2 cut(s) 14, 639
Hin1II CATG 8 cut(s) 194, 418, 450, 942, 952, 1049, 1123, 1340
Hin6I GCGC 2 cut(s) 12, 637
HinP1I GCGC 2 cut(s) 12, 637
HindIII AAGCTT 1 cut(s) 1323
HinfI GANTC 5 cut(s) 47, 90, 607, 784, 1116
HphI GGTGA 2 cut(s) 149, 460
Hpy166II GTNNAC 2 cut(s) 479, 1240
Hpy188I TCNGA 6 cut(s) 74, 306, 397, 545, 1203, 1216
Hpy188III TCNNGA 6 cut(s) 54, 87, 344, 807, 893, 1120
Hpy8I GTNNAC 2 cut(s) 479, 1240
HpyAV CCTTC 2 cut(s) 780, 1462
HpyCH4III ACNGT 4 cut(s) 426, 520, 693, 1428
HpyCH4V TGCA 9 cut(s) 256, 374, 446, 647, 665, 800, 961, 1083, 1379
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 530, 533, 958
HpyF3I CTNAG 6 cut(s) 71, 183, 228, 303, 327, 858
Hsp92II CATG 8 cut(s) 194, 418, 450, 942, 952, 1049, 1123, 1340
HspAI GCGC 2 cut(s) 12, 637
Kzo9I GATC 6 cut(s) 195, 386, 622, 679, 766, 914
LmnI GCTCC 4 cut(s) 104, 569, 1186, 1286
Lsp1109I GCAGC 6 cut(s) 511, 520, 523, 839, 849, 1165
LweI GCATC 1 cut(s) 731
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 2 cut(s) 282, 753
MaeIII GTNAC 8 cut(s) 137, 420, 455, 466, 850, 969, 1253, 1332
MalI GATC 6 cut(s) 197, 388, 624, 681, 768, 916
MbiI CCGCTC 1 cut(s) 857
MboI GATC 6 cut(s) 195, 386, 622, 679, 766, 914
MboII GAAGA 6 cut(s) 42, 99, 848, 1103, 1166, 1412
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 3 cut(s) 101, 311, 1149
MlsI TGGCCA 2 cut(s) 947, 1111
MluCI AATT 8 cut(s) 801, 924, 998, 1131, 1437, 1458, 1482, 1496
MluNI TGGCCA 2 cut(s) 947, 1111
MmeI TCCRAC 2 cut(s) 556, 1447
Mox20I TGGCCA 2 cut(s) 947, 1111
MscI TGGCCA 2 cut(s) 947, 1111
MseI TTAA 6 cut(s) 354, 1002, 1017, 1191, 1278, 1461
Msp20I TGGCCA 2 cut(s) 947, 1111
MspA1I CMGCKG 2 cut(s) 533, 862
MspCI CTTAAG 1 cut(s) 1016
MspR9I CCNGG 4 cut(s) 152, 384, 903, 1068
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 4 cut(s) 152, 384, 903, 1068
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 187, 530, 533, 958
NdeII GATC 6 cut(s) 195, 386, 622, 679, 766, 914
NlaIII CATG 8 cut(s) 194, 418, 450, 942, 952, 1049, 1123, 1340
NlaIV GGNNCC 3 cut(s) 170, 279, 1473
NmuCI GTSAC 4 cut(s) 137, 455, 466, 1253
NspI RCATGY 3 cut(s) 194, 418, 1049
PagI TCATGA 1 cut(s) 1119
PciI ACATGT 1 cut(s) 414
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 5 cut(s) 47, 90, 607, 784, 1116
PflFI GACNNNGTC 1 cut(s) 1418
PkrI GCNGC 8 cut(s) 189, 526, 535, 538, 829, 864, 954, 1180
PscI ACATGT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 311
Psp6I CCWGG 4 cut(s) 150, 382, 901, 1066
PspGI CCWGG 4 cut(s) 150, 382, 901, 1066
PspN4I GGNNCC 3 cut(s) 170, 279, 1473
PsrI GAACNNNNNNTAC 2 cut(s) 243, 275
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 2 cut(s) 395, 536
PsuI RGATCY 1 cut(s) 766
PsyI GACNNNGTC 1 cut(s) 1418
PvuII CAGCTG 2 cut(s) 533, 862
RsaI GTAC 3 cut(s) 261, 413, 517
RsaNI GTAC 3 cut(s) 260, 412, 516
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 6 cut(s) 354, 1002, 1017, 1191, 1278, 1461
SatI GCNGC 8 cut(s) 188, 525, 534, 537, 828, 863, 953, 1179
Sau3AI GATC 6 cut(s) 195, 386, 622, 679, 766, 914
SbfI CCTGCAGG 1 cut(s) 376
ScaI AGTACT 1 cut(s) 517
ScrFI CCNGG 4 cut(s) 152, 384, 903, 1068
SdaI CCTGCAGG 1 cut(s) 376
SduI GDGCHC 3 cut(s) 101, 311, 1149
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 1 cut(s) 731
SfcI CTRYAG 2 cut(s) 17, 372
SmlI CTYRAG 3 cut(s) 472, 1016, 1354
SmoI CTYRAG 3 cut(s) 472, 1016, 1354
Sse8387I CCTGCAGG 1 cut(s) 376
Sse9I AATT 8 cut(s) 801, 924, 998, 1131, 1437, 1458, 1482, 1496
SsiI CCGC 4 cut(s) 188, 598, 855, 952
SspI AATATT 1 cut(s) 439
SspMI CTAG 2 cut(s) 282, 753
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 4 cut(s) 150, 382, 901, 1066
StyI CCWWGG 5 cut(s) 172, 741, 871, 1149, 1476
TaaI ACNGT 4 cut(s) 426, 520, 693, 1428
TaqI TCGA 4 cut(s) 45, 88, 156, 1491
TasI AATT 8 cut(s) 801, 924, 998, 1131, 1437, 1458, 1482, 1496
TatI WGTACW 3 cut(s) 259, 411, 515
TauI GCSGC 2 cut(s) 190, 955
TfiI GAWTC 5 cut(s) 47, 90, 607, 784, 1116
Tru1I TTAA 6 cut(s) 354, 1002, 1017, 1191, 1278, 1461
Tru9I TTAA 6 cut(s) 354, 1002, 1017, 1191, 1278, 1461
TscAI CASTG 3 cut(s) 229, 638, 667
TseFI GTSAC 4 cut(s) 137, 455, 466, 1253
TseI GCWGC 6 cut(s) 524, 533, 536, 827, 862, 1178
Tsp45I GTSAC 4 cut(s) 137, 455, 466, 1253
TspDTI ATGAA 5 cut(s) 264, 643, 762, 1108, 1509
TspGWI ACGGA 1 cut(s) 767
TspRI CASTG 3 cut(s) 229, 638, 667
Tth111I GACNNNGTC 1 cut(s) 1418
Vha464I CTTAAG 1 cut(s) 1016
XapI RAATTY 1 cut(s) 1482
XceI RCATGY 3 cut(s) 194, 418, 1049
XcmI CCANNNNNNNNNTGG 2 cut(s) 158, 1430
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 2 cut(s) 282, 753
ZrmI AGTACT 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.