Rroxscaffold_6G00416800

Vitamin B6 photo-protection and homoeostasis

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
38675651 .. 38679773
4123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416800.1

Sequence Viewer

Length: 1515 bp
ATGCCTTGTTGCGCTTTACAGCTATCCCTCCCCATTTATGCTTTCGATTCTTCTAGAAAGACTGCGAACTTCAGGCCTTGCCACTCTCGAATCGCGTGCTCCTCCTCTTCTCAATCTGGCATTCGCAAAGATGATGATGTTGACATTGAAAACCAGGTCGATAATGGCAGGAACCGAGGCCAGCCTCAGCCGCATGTGATCTTGGTAGAGAGATATGGAAATGGCACTGCTAAGAGGTATGTGGTAGATGATGAACTGCAAGTACAGACATTTGTAGAGGAACCTAGTTCAAAAGCTAATACATCTCAGAGCTCGCATTTCTCCAATAATGAGTTATCGTGGCTTCCCGATATTGTTAAAGATTTTATCCTTCCTGCAGGCTTCCCAGGATCAGTTTCTGATGATTATTTATTGTACATGTTGTTACAGTTCCCTACCAATGTTACTGCATGGATTTGTCACACTTTAGTCACCTCAAGTCTACTAAAGGCTGTTGGTGTTGGCTCTTTCTCTGGCAGTACTGCTGCTGCTTCGGCTGCTGCTATCAGATGGGTTTCAAAAGATGGAATAGGAGCTGTTGGACGCTTATTTATCGGTGGGCGGTTTGGGAATCTTTTTGATGATGATCCAAAGCAGTGGCGCTTATATGCAGACTTCATTGGCAGTGCAGGAAGCATTTTTGATCTTACTACACCGTTGTATCCTGCCTATTTCCTGCCATTGGCATCTCTTGGAAATCTTACCAAGGCTGTTGCTAGAGGACTAAAAGATCCTTCATTCCGTGTGATTCAAAGTCATTTTGCAATTTCGGGAAATCTGGGAGATGTAGCAGCAAAGGAAGAAGTTTGGGAAGTAACCGCTCAGCTGCTTGGCCTTGGTTTGGGCATACTTTTTCTGGATACACCTGGCCTTGTAAGATCATACCCAATTCTGGTAGCTACATGGATGGTCATGCGGCTTCTGCACCTCTGGTTACGCTATCAATCGTTATCAGTTCTCCAATTTAACTCAATAAATCTTAAGCGTGCTTGTATATTGGTAAAATCGCACGTATTACACTCTATCGTTCCTGGTATTGTTAGTTGCAATAAGGAAGAAAACATATTATTGTGGCCAAGATTCATGACACCCCGAATTACATTTGGTGTGCCCTTGGAAGAGATGATTTTTGGGGAGAAAGCTGCTCCGATGGTTAAGGCACTTCTGAAACTATATTCAAAGGAGAAGTATATTCTTGTAGTGAACCAACAAAAAAGTGACTTTGAGGTCTTTGTGTCATTTAAGGTGGGAGCTTCAAGTATGTCAGTTTTACGAAGTTTGTGGCAAGCTTATTGGTTACATGAGAACTGGAATAGCTCAAGTATTGCCCTCGAACAGCTTGCACAAAGCCGTTTGGAGATGGAAGATAGGTTTGAGGACTTCATCCAACAGTTGAATGGAATTGGATGGGATACACTTCAAATTAACCTGAAGGTTCCCAAGGAAATTTCCCTCGATGAATTGAACCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

504

Amino Acids

56.16

Weight (kDa)

6.33

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UVB_sens_prot PF04884 112 - 352 2.1e-67 Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C PF24160 360 - 491 3.7e-08 Root UVB sensitive protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012199)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1265
AccBSI CCGCTC 1 cut(s) 860
AccI GTMKAC 1 cut(s) 481
AccII CGCG 1 cut(s) 95
AciI CCGC 4 cut(s) 191, 601, 858, 955
AclWI GGATC 3 cut(s) 397, 620, 764
AcoI YGGCCR 1 cut(s) 1112
AcsI RAATTY 1 cut(s) 1485
AcuI CTGAAG 2 cut(s) 55, 1490
AfaI GTAC 3 cut(s) 264, 416, 520
AfiI CCNNNNNNNGG 3 cut(s) 721, 880, 931
AflII CTTAAG 1 cut(s) 1019
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 9 cut(s) 149, 291, 558, 791, 1218, 1296, 1435, 1460, 1504
AjnI CCWGG 4 cut(s) 153, 385, 904, 1069
Alw21I GWGCWC 2 cut(s) 101, 314
AlwI GGATC 3 cut(s) 397, 620, 764
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 5 cut(s) 74, 178, 871, 907, 1112
ApeKI GCWGC 7 cut(s) 524, 527, 536, 539, 830, 865, 1181
ApoI RAATTY 1 cut(s) 1485
AspLEI GCGC 2 cut(s) 14, 642
AsuHPI GGTGA 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 1152
BaeI ACNNNNGTAYC 2 cut(s) 683, 716
BalI TGGCCA 1 cut(s) 1114
BanII GRGCYC 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 101, 314
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 7 cut(s) 511, 514, 523, 526, 842, 852, 1168
BccI CCATC 6 cut(s) 543, 557, 940, 1183, 1393, 1440
BceAI ACGGC 1 cut(s) 1374
BcgI CGANNNNNNTGC 4 cut(s) 78, 112, 1361, 1395
BciT130I CCWGG 4 cut(s) 155, 387, 906, 1071
BciVI GTATCC 3 cut(s) 711, 892, 1444
BfaI CTAG 3 cut(s) 54, 285, 756
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 643
BfrI CTTAAG 1 cut(s) 1019
BfuI GTATCC 3 cut(s) 711, 892, 1444
BisI GCNGC 9 cut(s) 191, 525, 528, 537, 540, 831, 866, 956, 1182
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 9 cut(s) 192, 526, 529, 538, 541, 832, 867, 957, 1183
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 4 cut(s) 155, 387, 906, 1071
BmiI GGNNCC 3 cut(s) 173, 282, 1476
BmrFI CCNGG 4 cut(s) 155, 387, 906, 1071
BmsI GCATC 1 cut(s) 734
Bpu10I CCTNAGC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 861
BpuEI CTTGAG 2 cut(s) 460, 1342
BsaAI YACGTR 1 cut(s) 1051
BsaBI GATNNNNATC 1 cut(s) 624
BsaJI CCNNGG 6 cut(s) 175, 385, 744, 874, 1152, 1479
Bsc4I CCNNNNNNNGG 3 cut(s) 721, 880, 931
Bse1I ACTGG 1 cut(s) 1352
Bse8I GATNNNNATC 1 cut(s) 624
BseBI CCWGG 4 cut(s) 155, 387, 906, 1071
BseDI CCNNGG 6 cut(s) 175, 385, 744, 874, 1152, 1479
BseGI GGATG 3 cut(s) 951, 1422, 1451
BseJI GATNNNNATC 1 cut(s) 624
BseLI CCNNNNNNNGG 3 cut(s) 721, 880, 931
BseMII CTCAG 3 cut(s) 200, 320, 875
BseNI ACTGG 1 cut(s) 1352
BseRI GAGGAG 2 cut(s) 91, 94
BseSI GKGCMC 1 cut(s) 1152
BseXI GCAGC 7 cut(s) 511, 514, 523, 526, 842, 852, 1168
BsgI GTGCAG 2 cut(s) 687, 947
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 76, 180, 873, 909, 1114
BsiHKAI GWGCWC 2 cut(s) 101, 314
BslI CCNNNNNNNGG 3 cut(s) 721, 880, 931
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 5 cut(s) 76, 180, 873, 909, 1114
Bsp1286I GDGCHC 3 cut(s) 101, 314, 1152
Bsp1407I TGTACA 1 cut(s) 414
Bsp143I GATC 6 cut(s) 198, 389, 625, 682, 769, 917
Bsp1720I GCTNAGC 1 cut(s) 861
BspACI CCGC 4 cut(s) 191, 601, 858, 955
BspANI GGCC 5 cut(s) 76, 180, 873, 909, 1114
BspCNI CTCAG 3 cut(s) 199, 319, 874
BspFNI CGCG 1 cut(s) 95
BspHI TCATGA 1 cut(s) 1122
BspLI GGNNCC 3 cut(s) 173, 282, 1476
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 3 cut(s) 397, 620, 764
BspTI CTTAAG 1 cut(s) 1019
BsrBI CCGCTC 1 cut(s) 860
BsrGI TGTACA 1 cut(s) 414
BsrI ACTGG 1 cut(s) 1352
BssECI CCNNGG 6 cut(s) 175, 385, 744, 874, 1152, 1479
BssMI GATC 6 cut(s) 198, 389, 625, 682, 769, 917
BssT1I CCWWGG 4 cut(s) 744, 874, 1152, 1479
Bst2UI CCWGG 4 cut(s) 155, 387, 906, 1071
Bst4CI ACNGT 3 cut(s) 429, 696, 1431
Bst6I CTCTTC 2 cut(s) 112, 1152
BstAFI CTTAAG 1 cut(s) 1019
BstAUI TGTACA 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 1051
BstC8I GCNNGC 7 cut(s) 97, 182, 314, 379, 1026, 1326, 1380
BstDEI CTNAG 4 cut(s) 186, 231, 306, 861
BstF5I GGATG 3 cut(s) 951, 1422, 1451
BstFNI CGCG 1 cut(s) 95
BstH2I RGCGCY 1 cut(s) 643
BstHHI GCGC 2 cut(s) 14, 642
BstKTI GATC 6 cut(s) 201, 392, 628, 685, 772, 920
BstMBI GATC 6 cut(s) 198, 389, 625, 682, 769, 917
BstMWI GCNNNNNNNGC 4 cut(s) 190, 533, 536, 961
BstNI CCWGG 4 cut(s) 155, 387, 906, 1071
BstNSI RCATGY 2 cut(s) 197, 421
BstSCI CCNGG 4 cut(s) 153, 385, 904, 1069
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 1 cut(s) 1152
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 7 cut(s) 511, 514, 523, 526, 842, 852, 1168
BstX2I RGATCY 1 cut(s) 769
BstXI CCANNNNNNTGG 1 cut(s) 636
BstYI RGATCY 1 cut(s) 769
BsuI GTATCC 3 cut(s) 711, 892, 1444
BsuRI GGCC 5 cut(s) 76, 180, 873, 909, 1114
BtsCI GGATG 3 cut(s) 951, 1422, 1451
BtsI GCAGTG 3 cut(s) 225, 641, 670
BtsIMutI CAGTG 3 cut(s) 225, 641, 670
Cac8I GCNNGC 7 cut(s) 97, 182, 314, 379, 1026, 1326, 1380
CaiI CAGNNNCTG 1 cut(s) 398
CciI TCATGA 1 cut(s) 1122
CfoI GCGC 2 cut(s) 14, 642
CseI GACGC 1 cut(s) 591
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 3 cut(s) 263, 415, 519
CviAII CATG 7 cut(s) 194, 418, 450, 942, 952, 1123, 1340
CviQI GTAC 3 cut(s) 263, 415, 519
DdeI CTNAG 4 cut(s) 186, 231, 306, 861
DpnI GATC 6 cut(s) 200, 391, 627, 684, 771, 919
DpnII GATC 6 cut(s) 198, 389, 625, 682, 769, 917
DrdI GACNNNNNNGTC 1 cut(s) 1265
DseDI GACNNNNNNGTC 1 cut(s) 1265
EaeI YGGCCR 1 cut(s) 1112
Eam1104I CTCTTC 2 cut(s) 112, 1152
EarI CTCTTC 2 cut(s) 112, 1152
Ecl136II GAGCTC 1 cut(s) 312
Eco130I CCWWGG 4 cut(s) 744, 874, 1152, 1479
Eco147I AGGCCT 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 55, 1490
EcoICRI GAGCTC 1 cut(s) 312
EcoRII CCWGG 4 cut(s) 153, 385, 904, 1069
EcoT14I CCWWGG 4 cut(s) 744, 874, 1152, 1479
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 4 cut(s) 744, 874, 1152, 1479
FaeI CATG 7 cut(s) 197, 421, 453, 945, 955, 1126, 1343
FatI CATG 7 cut(s) 193, 417, 449, 941, 951, 1122, 1339
FblI GTMKAC 1 cut(s) 481
Fnu4HI GCNGC 9 cut(s) 191, 525, 528, 537, 540, 831, 866, 956, 1182
FokI GGATG 3 cut(s) 958, 1409, 1458
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 9 cut(s) 191, 525, 528, 537, 540, 831, 866, 956, 1182
FspBI CTAG 3 cut(s) 54, 285, 756
GlaI GCGC 2 cut(s) 13, 641
GluI GCNGC 9 cut(s) 191, 525, 528, 537, 540, 831, 866, 956, 1182
HaeII RGCGCY 1 cut(s) 643
HaeIII GGCC 5 cut(s) 76, 180, 873, 909, 1114
HgaI GACGC 1 cut(s) 591
HhaI GCGC 2 cut(s) 14, 642
Hin1II CATG 7 cut(s) 197, 421, 453, 945, 955, 1126, 1343
Hin6I GCGC 2 cut(s) 12, 640
HinP1I GCGC 2 cut(s) 12, 640
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 1326
HinfI GANTC 5 cut(s) 47, 90, 610, 787, 1119
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 3 cut(s) 142, 482, 1243
Hpy188I TCNGA 5 cut(s) 309, 400, 548, 1188, 1206
Hpy188III TCNNGA 6 cut(s) 54, 87, 347, 810, 896, 1123
Hpy8I GTNNAC 3 cut(s) 142, 482, 1243
HpyAV CCTTC 3 cut(s) 380, 783, 1465
HpyCH4III ACNGT 3 cut(s) 429, 696, 1431
HpyCH4IV ACGT 1 cut(s) 1050
HpyCH4V TGCA 9 cut(s) 259, 377, 449, 650, 668, 803, 964, 1086, 1382
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 533, 536, 961
HpyF3I CTNAG 4 cut(s) 186, 231, 306, 861
HpySE526I ACGT 1 cut(s) 1050
Hsp92II CATG 7 cut(s) 197, 421, 453, 945, 955, 1126, 1343
HspAI GCGC 2 cut(s) 12, 640
Kzo9I GATC 6 cut(s) 198, 389, 625, 682, 769, 917
LmnI GCTCC 4 cut(s) 104, 572, 1189, 1289
Lsp1109I GCAGC 7 cut(s) 511, 514, 523, 526, 842, 852, 1168
LweI GCATC 1 cut(s) 734
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 3 cut(s) 54, 285, 756
MaeII ACGT 1 cut(s) 1050
MaeIII GTNAC 8 cut(s) 423, 442, 458, 469, 853, 972, 1256, 1335
MalI GATC 6 cut(s) 200, 391, 627, 684, 771, 919
MbiI CCGCTC 1 cut(s) 860
MboI GATC 6 cut(s) 198, 389, 625, 682, 769, 917
MboII GAAGA 6 cut(s) 42, 99, 851, 1106, 1169, 1415
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 3 cut(s) 101, 314, 1152
MlsI TGGCCA 1 cut(s) 1114
MluCI AATT 8 cut(s) 804, 927, 1001, 1134, 1440, 1461, 1485, 1499
MluNI TGGCCA 1 cut(s) 1114
MmeI TCCRAC 2 cut(s) 559, 1450
Mox20I TGGCCA 1 cut(s) 1114
MscI TGGCCA 1 cut(s) 1114
MseI TTAA 6 cut(s) 357, 1005, 1020, 1194, 1281, 1464
Msp20I TGGCCA 1 cut(s) 1114
MspA1I CMGCKG 1 cut(s) 865
MspCI CTTAAG 1 cut(s) 1019
MspR9I CCNGG 4 cut(s) 155, 387, 906, 1071
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 4 cut(s) 155, 387, 906, 1071
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 190, 533, 536, 961
NdeII GATC 6 cut(s) 198, 389, 625, 682, 769, 917
NlaIII CATG 7 cut(s) 197, 421, 453, 945, 955, 1126, 1343
NlaIV GGNNCC 3 cut(s) 173, 282, 1476
NmuCI GTSAC 3 cut(s) 458, 469, 1256
NspI RCATGY 2 cut(s) 197, 421
PagI TCATGA 1 cut(s) 1122
PceI AGGCCT 1 cut(s) 76
PciI ACATGT 1 cut(s) 417
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 5 cut(s) 47, 90, 610, 787, 1119
PkrI GCNGC 9 cut(s) 192, 526, 529, 538, 541, 832, 867, 957, 1183
Ppu21I YACGTR 1 cut(s) 1051
PscI ACATGT 1 cut(s) 417
Psp124BI GAGCTC 1 cut(s) 314
Psp6I CCWGG 4 cut(s) 153, 385, 904, 1069
PspGI CCWGG 4 cut(s) 153, 385, 904, 1069
PspN4I GGNNCC 3 cut(s) 173, 282, 1476
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 865
RsaI GTAC 3 cut(s) 264, 416, 520
RsaNI GTAC 3 cut(s) 263, 415, 519
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 6 cut(s) 357, 1005, 1020, 1194, 1281, 1464
SatI GCNGC 9 cut(s) 191, 525, 528, 537, 540, 831, 866, 956, 1182
Sau3AI GATC 6 cut(s) 198, 389, 625, 682, 769, 917
SbfI CCTGCAGG 1 cut(s) 379
ScaI AGTACT 1 cut(s) 520
ScrFI CCNGG 4 cut(s) 155, 387, 906, 1071
SdaI CCTGCAGG 1 cut(s) 379
SduI GDGCHC 3 cut(s) 101, 314, 1152
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 1 cut(s) 734
SfcI CTRYAG 1 cut(s) 375
SmlI CTYRAG 3 cut(s) 475, 1019, 1357
SmoI CTYRAG 3 cut(s) 475, 1019, 1357
Sse8387I CCTGCAGG 1 cut(s) 379
Sse9I AATT 8 cut(s) 804, 927, 1001, 1134, 1440, 1461, 1485, 1499
SseBI AGGCCT 1 cut(s) 76
SsiI CCGC 4 cut(s) 191, 601, 858, 955
SspMI CTAG 3 cut(s) 54, 285, 756
SstI GAGCTC 1 cut(s) 314
StuI AGGCCT 1 cut(s) 76
StyD4I CCNGG 4 cut(s) 153, 385, 904, 1069
StyI CCWWGG 4 cut(s) 744, 874, 1152, 1479
TaaI ACNGT 3 cut(s) 429, 696, 1431
TaiI ACGT 1 cut(s) 1053
TaqI TCGA 5 cut(s) 45, 88, 159, 1371, 1494
TasI AATT 8 cut(s) 804, 927, 1001, 1134, 1440, 1461, 1485, 1499
TatI WGTACW 3 cut(s) 262, 414, 518
TauI GCSGC 2 cut(s) 193, 958
TfiI GAWTC 5 cut(s) 47, 90, 610, 787, 1119
Tru1I TTAA 6 cut(s) 357, 1005, 1020, 1194, 1281, 1464
Tru9I TTAA 6 cut(s) 357, 1005, 1020, 1194, 1281, 1464
TscAI CASTG 3 cut(s) 232, 641, 670
TseFI GTSAC 3 cut(s) 458, 469, 1256
TseI GCWGC 7 cut(s) 524, 527, 536, 539, 830, 865, 1181
Tsp45I GTSAC 3 cut(s) 458, 469, 1256
TspDTI ATGAA 6 cut(s) 267, 646, 765, 1111, 1411, 1512
TspGWI ACGGA 1 cut(s) 770
TspRI CASTG 3 cut(s) 232, 641, 670
Vha464I CTTAAG 1 cut(s) 1019
XapI RAATTY 1 cut(s) 1485
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 2 cut(s) 197, 421
XcmI CCANNNNNNNNNTGG 2 cut(s) 161, 1433
XmiI GTMKAC 1 cut(s) 481
XspI CTAG 3 cut(s) 54, 285, 756
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.