FvH4_6g11640

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002842
Physical Location & Seq
Forward (+)
6968073 .. 6975030
6958 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11640.t11

Sequence Viewer

Length: 2382 bp
ATGAGCAGTTTAGGGTTTAGGTCCGTGGTCTTTCACGGCGAGCTTTGCTTGGGTGAGCTGGACGCTATCCCGGTGACGGAGGCGAAATTTCAGTTCCCGAACAACGAGATTCGAATCCACCACATCTCGCAGCAAAGTGAACGCTGTCCACCTCTCTCAGTTCTTCAAACGATTTCCTCATTTTCGGTGAGATGCAAGCTCGAATCGTCCATTCCAGTTGAACAGCCTCATTTGATCAATCTCCACGCCTCCTGCTTCTACGAGCTCAAGACGGCGGTAGTGTTGGTTGGAAATGAAGAGATTCACTTGGTGGCAATGCCGAGTAAGCAGAAAAAGTTTCCATGCTTTTGGTGCTATTCAGTTCCTATAGGTCTGTATAATGCTTCTCTTGGAATGCTGAACCCGAGGTGTCTCTCAATTGTATTTGATCTCGATGAGACACTTATTGTTGCCAACACAATGAAGTCGTTTGAGGATAGAATTGAGGCCTTACGAGGTTGGATTGCACGAGAGGGTGAAACTTCGCGAATTGCTGGAATGTCTAATGAAATGAAACGGTACATTGACGATAGGTGGCTGTTGAAGCAGTATATAGATAATAATTGCGTGGTGGATAATGGGAAGGTGTATAAGATTCAAATGGAGGAGGTTCCTCCTCTGTCAGGTAATCACGAGAGAATCCGTCGGCCAATAGTTAGAATGCCAGACAAGAACATTGTGCTCACTCGCATCAATCCTGAGGTTCGTGATACAAGTGTGCTAGTGAGGTTACGGCCTGCGTGGGAAGATCTGAGAAGTTATCTAACTGCAAAAGGACGGAAGCGGTTTGAAGTTCATGTCTGTACCATGGCTGAAAGGGACTATGCCTTAGAAATGTGGAGGCTTCTGGACCCAGAAGAACAACTAATAAGTTCAAAGCAACTTCTTGACCGTGTTGTTTGTGTCAAATCAGGTTCACGGAAATCTTTACTCAATGTCTTCCAACATGGAACGTGCCATCCAAAGATGGCCATGGTTATTGATGATCGTTCAAATGTCTGGGAAGATAAGGATCAACCTCGAGTTCATGTAGTTCCAGCTTTTACTCCTTACTATGCTCCTCAAGCAGAGACAGCAAGTCCCGTTCCTGTCCTCTGTGTAGCAAGAAATGTTGCATGCAATGTCAGAGGCTGCTTTTTCAAAGAGTTTGATGAGATTTTCTTGCGAAGAATTTCTGAAATTTTTTATGAAGACGAGGTGGTAAATTTACCTCCTTCTCCTGATGTGAGCAATTACTTGATATCAGAGGATGCTGGTTTTGTACCAAATGGAATTGCTCCCCTTAGTGAAGGAATGCATGGTGGTGAAGTTGAACGGAGACTGAACCAACATGATGATAAAGGTGTTATGGACACATTGGCTCATTCTAATCATGCTGAGTTAAGACTTGATAACTCCCAGAAACCTGTATTAACTGTCCCTGTCCCCAATGTCCCTGGTGTAACTTCATTGAGACCGGTCATGCCTGCTTATAAACCTGGTTTGCTTGGACCTCTCGTAAGACGAGACAGCTTTTCTGATCGTGAGAATAAGATGAAGAGAGGACTTCTTGGTACAAATCCTTGTCTAGATATAAATAGTCAAAGCTCTGGTGAACCCCCACAATCGTCTAGAGTACCTGCACAAACTTCAGCGTCCACAGTACACACACAAGGAGGGTGGTTGGTGGATGATGACAAGAGAAGAGGAAATTCAAGTTTTCGACCTCCTGGTTCTGCTCAAGAGTCTGATGTTTTAAAACCTGAGAAGCTGGTGTACCAGAATCCGTTTAGTCTTAATAAACCGTCTGCTCCTGTTGTTTTACCCTCACAGACATCTGAGGCAAGGAGGGAAGAGGTTAGCTCTGGACATAATTTCCAAAAACAAAATCTTCCTTTTCCAAGTCTGTTATCAGAGGGTGGTGTGTCTCAGAATCAGGCATCTTTTCTAAAAAACGAATCTGGAAAAGTGAACGCGCTGCCGTCCCCTTTATCTATAGGTGTGCTGCAGGAAATTGGTCGGAGGTGCAGCTCAAAGGTTGAGTTTAAAGCTGTTATAAGCACCAGTAACGATTTGCAGTTTTCTTTTGAGGTTCTCTTCACTGGGGAGAAGATTGGTTTTGGAACTGGAAGGACAAGAAAGGATGCTCAACAACAGGCTGCTGAGAATGCACTTCACAGCTTGGCTGAAAAATATGTCTCATATATGGCACCGCGAACCGGAGCTGTTAACAAAGATTTTGATAAACTCTCTCTTGGAAGTGAAAATGGATTTGTTGTGGACATAGTTGGTCCAGGATCAGCTGAGGTCCTAATGGATGATGGCTTGCCAAAAGAAAGTATTTCTGAGGTGGGGAATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

794

Amino Acids

88.45

Weight (kDa)

6.45

Isoelectric Point (pI)

56.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 253 - 315 3.1e-08 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1512, 2075
Acc36I ACCTGC 1 cut(s) 1666
AccB1I GGYRCC 1 cut(s) 2227
AccII CGCG 3 cut(s) 526, 1994, 2233
AciI CCGC 3 cut(s) 275, 823, 2231
AclWI GGATC 2 cut(s) 1059, 2323
AcoI YGGCCR 2 cut(s) 686, 1008
AcsI RAATTY 5 cut(s) 86, 1209, 1218, 1243, 1729
AcuI CTGAAG 1 cut(s) 1653
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 7 cut(s) 560, 844, 1302, 1594, 1656, 1683, 1796
AfiI CCNNNNNNNGG 3 cut(s) 76, 662, 2237
AgeI ACCGGT 1 cut(s) 1495
AhdI GACNNNNNGTC 1 cut(s) 1116
AjnI CCWGG 4 cut(s) 1474, 1516, 1747, 2311
AloI GAACNNNNNNTCC 2 cut(s) 982, 1014
Alw21I GWGCWC 2 cut(s) 267, 723
Alw26I GTCTC 8 cut(s) 416, 431, 1103, 1351, 1486, 1539, 1950, 2221
AlwI GGATC 2 cut(s) 1059, 2323
AlwNI CAGNNNCTG 1 cut(s) 1170
Ama87I CYCGRG 2 cut(s) 403, 1059
AoxI GGCC 4 cut(s) 486, 686, 773, 1008
ApeKI GCWGC 6 cut(s) 130, 1170, 1996, 2023, 2046, 2177
ApoI RAATTY 5 cut(s) 86, 1209, 1218, 1243, 1729
AsiGI ACCGGT 1 cut(s) 1495
Asp700I GAANNNNTTC 2 cut(s) 300, 1210
AspLEI GCGC 1 cut(s) 1996
AspS9I GGNCC 5 cut(s) 21, 889, 1529, 2309, 2326
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 6 cut(s) 65, 85, 199, 527, 1355, 1643
AsuII TTCGAA 1 cut(s) 112
AvaI CYCGRG 2 cut(s) 403, 1059
AvaII GGWCC 5 cut(s) 21, 889, 1529, 2309, 2326
AxyI CCTNAGG 1 cut(s) 738
BaeI ACNNNNGTAYC 2 cut(s) 741, 774
BalI TGGCCA 1 cut(s) 1010
BanI GGYRCC 1 cut(s) 2227
BanII GRGCYC 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 1778, 1810
BauI CACGAG 2 cut(s) 507, 671
BbsI GAAGAC 2 cut(s) 970, 1236
Bbv12I GWGCWC 2 cut(s) 267, 723
BbvCI CCTCAGC 1 cut(s) 2322
BbvI GCAGC 6 cut(s) 142, 1157, 1983, 2010, 2058, 2164
BccI CCATC 3 cut(s) 1000, 1005, 2333
BceAI ACGGC 4 cut(s) 52, 288, 788, 1984
BciT130I CCWGG 4 cut(s) 1476, 1518, 1749, 2313
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 8 cut(s) 416, 431, 1103, 1351, 1486, 1539, 1950, 2221
BfaI CTAG 3 cut(s) 761, 1607, 1650
BfmI CTRYAG 3 cut(s) 366, 2013, 2024
BfuAI ACCTGC 1 cut(s) 1666
BglII AGATCT 1 cut(s) 787
BisI GCNGC 6 cut(s) 131, 1171, 1997, 2024, 2047, 2178
BlsI GCNGC 6 cut(s) 132, 1172, 1998, 2025, 2048, 2179
Bme1390I CCNGG 5 cut(s) 71, 1476, 1518, 1749, 2313
Bme18I GGWCC 5 cut(s) 21, 889, 1529, 2309, 2326
BmeRI GACNNNNNGTC 1 cut(s) 1116
BmeT110I CYCGRG 2 cut(s) 403, 1059
BmgT120I GGNCC 5 cut(s) 21, 889, 1529, 2309, 2326
BmiI GGNNCC 3 cut(s) 651, 891, 2229
BmrFI CCNGG 5 cut(s) 71, 1476, 1518, 1749, 2313
BmrI ACTGGG 1 cut(s) 2130
BmsI GCATC 5 cut(s) 182, 738, 1279, 1967, 2152
BmuI ACTGGG 1 cut(s) 2130
BpiI GAAGAC 2 cut(s) 970, 1236
BplI GAGNNNNNCTC 2 cut(s) 1865, 1897
Bpu10I CCTNAGC 1 cut(s) 2322
Bpu14I TTCGAA 1 cut(s) 112
BpuEI CTTGAG 3 cut(s) 251, 1086, 1743
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 2377
BsaBI GATNNNNATC 2 cut(s) 113, 1050
BsaI GGTCTC 1 cut(s) 1486
BsaJI CCNNGG 5 cut(s) 24, 404, 846, 1011, 1474
BsaWI WCCGGW 2 cut(s) 1495, 2237
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 662, 2237
Bse118I RCCGGY 1 cut(s) 1495
Bse1I ACTGG 4 cut(s) 215, 2082, 2125, 2149
Bse21I CCTNAGG 1 cut(s) 738
Bse3DI GCAATG 2 cut(s) 321, 1165
Bse8I GATNNNNATC 2 cut(s) 113, 1050
BseBI CCWGG 4 cut(s) 1476, 1518, 1749, 2313
BseCI ATCGAT 1 cut(s) 2377
BseDI CCNNGG 5 cut(s) 24, 404, 846, 1011, 1474
BseGI GGATG 5 cut(s) 997, 1294, 1714, 2167, 2341
BseJI GATNNNNATC 2 cut(s) 113, 1050
BseLI CCNNNNNNNGG 3 cut(s) 76, 662, 2237
BseMI GCAATG 2 cut(s) 321, 1165
BseNI ACTGG 4 cut(s) 215, 2082, 2125, 2149
BseRI GAGGAG 3 cut(s) 645, 659, 1089
BseXI GCAGC 6 cut(s) 142, 1157, 1983, 2010, 2058, 2164
BsgI GTGCAG 2 cut(s) 1644, 2065
Bsh1236I CGCG 3 cut(s) 526, 1994, 2233
BshFI GGCC 4 cut(s) 488, 688, 775, 1010
BshNI GGYRCC 1 cut(s) 2227
BshTI ACCGGT 1 cut(s) 1495
BshVI ATCGAT 1 cut(s) 2377
BsiHKAI GWGCWC 2 cut(s) 267, 723
BsiHKCI CYCGRG 2 cut(s) 403, 1059
BsiSI CCGG 3 cut(s) 71, 1496, 2238
BslFI GGGAC 6 cut(s) 872, 1104, 1442, 1448, 1457, 1987
BslI CCNNNNNNNGG 3 cut(s) 76, 662, 2237
BsmAI GTCTC 8 cut(s) 416, 431, 1103, 1351, 1486, 1539, 1950, 2221
BsmFI GGGAC 6 cut(s) 872, 1104, 1442, 1448, 1457, 1987
BsmI GAATGC 4 cut(s) 399, 705, 1338, 2191
BsnI GGCC 4 cut(s) 488, 688, 775, 1010
Bso31I GGTCTC 1 cut(s) 1486
BsoBI CYCGRG 2 cut(s) 403, 1059
Bsp119I TTCGAA 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 267, 723
Bsp143I GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
Bsp19I CCATGG 2 cut(s) 846, 1011
Bsp68I TCGCGA 1 cut(s) 526
BspACI CCGC 3 cut(s) 275, 823, 2231
BspANI GGCC 4 cut(s) 488, 688, 775, 1010
BspDI ATCGAT 1 cut(s) 2377
BspFNI CGCG 3 cut(s) 526, 1994, 2233
BspLI GGNNCC 3 cut(s) 651, 891, 2229
BspMAI CTGCAG 1 cut(s) 2028
BspMI ACCTGC 1 cut(s) 1666
BspPI GGATC 2 cut(s) 1059, 2323
BspT104I TTCGAA 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 2227
BspTNI GGTCTC 1 cut(s) 1486
BsrDI GCAATG 2 cut(s) 321, 1165
BsrFI RCCGGY 1 cut(s) 1495
BsrI ACTGG 4 cut(s) 215, 2082, 2125, 2149
BssAI RCCGGY 1 cut(s) 1495
BssECI CCNNGG 5 cut(s) 24, 404, 846, 1011, 1474
BssMI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
BssSI CACGAG 2 cut(s) 507, 671
BssT1I CCWWGG 2 cut(s) 846, 1011
Bst2BI CACGAG 2 cut(s) 507, 671
Bst2UI CCWGG 4 cut(s) 1476, 1518, 1749, 2313
Bst4CI ACNGT 5 cut(s) 558, 932, 1456, 1681, 1824
Bst6I CTCTTC 5 cut(s) 291, 1571, 1717, 1866, 2120
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 6 cut(s) 41, 197, 777, 1156, 1506, 2345
BstDSI CCRYGG 3 cut(s) 24, 846, 1011
BstENI CCTNNNNNAGG 1 cut(s) 660
BstF5I GGATG 5 cut(s) 997, 1294, 1714, 2167, 2341
BstFNI CGCG 3 cut(s) 526, 1994, 2233
BstHHI GCGC 1 cut(s) 1996
BstKTI GATC 7 cut(s) 237, 430, 790, 1027, 1054, 1561, 2318
BstMAI GTCTC 8 cut(s) 416, 431, 1103, 1351, 1486, 1539, 1950, 2221
BstMBI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
BstMWI GCNNNNNNNGC 7 cut(s) 45, 325, 351, 583, 1103, 1112, 2186
BstNI CCWGG 4 cut(s) 1476, 1518, 1749, 2313
BstNSI RCATGY 1 cut(s) 1158
BstSCI CCNGG 5 cut(s) 69, 1474, 1516, 1747, 2311
BstSFI CTRYAG 3 cut(s) 366, 2013, 2024
BstUI CGCG 3 cut(s) 526, 1994, 2233
BstV1I GCAGC 6 cut(s) 142, 1157, 1983, 2010, 2058, 2164
BstV2I GAAGAC 2 cut(s) 970, 1236
BstX2I RGATCY 1 cut(s) 787
BstXI CCANNNNNNTGG 1 cut(s) 348
BstYI RGATCY 1 cut(s) 787
Bsu15I ATCGAT 1 cut(s) 2377
Bsu36I CCTNAGG 1 cut(s) 738
BsuRI GGCC 4 cut(s) 488, 688, 775, 1010
BsuTUI ATCGAT 1 cut(s) 2377
BtgI CCRYGG 3 cut(s) 24, 846, 1011
BtsCI GGATG 5 cut(s) 997, 1294, 1714, 2167, 2341
BtsIMutI CAGTG 1 cut(s) 2118
BtuMI TCGCGA 1 cut(s) 526
BveI ACCTGC 1 cut(s) 1666
Cac8I GCNNGC 6 cut(s) 41, 197, 777, 1156, 1506, 2345
CaiI CAGNNNCTG 1 cut(s) 1170
CfoI GCGC 1 cut(s) 1996
Cfr10I RCCGGY 1 cut(s) 1495
Cfr13I GGNCC 5 cut(s) 21, 889, 1529, 2309, 2326
ClaI ATCGAT 1 cut(s) 2377
CseI GACGC 2 cut(s) 71, 1662
CsiI ACCWGGT 1 cut(s) 1516
Csp6I GTAC 7 cut(s) 559, 843, 1301, 1593, 1655, 1682, 1795
CspAI ACCGGT 1 cut(s) 1495
CspCI CAANNNNNGTGG 2 cut(s) 1679, 1714
CviQI GTAC 7 cut(s) 559, 843, 1301, 1593, 1655, 1682, 1795
DpnI GATC 7 cut(s) 236, 429, 789, 1026, 1053, 1560, 2317
DpnII GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
DraI TTTAAA 2 cut(s) 1776, 2065
DraIII CACNNNGTG 1 cut(s) 310
DriI GACNNNNNGTC 1 cut(s) 1116
EaeI YGGCCR 2 cut(s) 686, 1008
Eam1104I CTCTTC 5 cut(s) 291, 1571, 1717, 1866, 2120
Eam1105I GACNNNNNGTC 1 cut(s) 1116
EarI CTCTTC 5 cut(s) 291, 1571, 1717, 1866, 2120
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 2 cut(s) 846, 1011
Eco147I AGGCCT 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 1486
Eco32I GATATC 1 cut(s) 1281
Eco47I GGWCC 5 cut(s) 21, 889, 1529, 2309, 2326
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 1653
Eco81I CCTNAGG 1 cut(s) 738
Eco88I CYCGRG 2 cut(s) 403, 1059
EcoICRI GAGCTC 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 660
EcoO109I RGGNCCY 1 cut(s) 2326
EcoRII CCWGG 4 cut(s) 1474, 1516, 1747, 2311
EcoRV GATATC 1 cut(s) 1281
EcoT14I CCWWGG 2 cut(s) 846, 1011
EcoT22I ATGCAT 1 cut(s) 1338
EcoT38I GRGCYC 1 cut(s) 267
ErhI CCWWGG 2 cut(s) 846, 1011
FaqI GGGAC 6 cut(s) 872, 1104, 1442, 1448, 1457, 1987
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 6 cut(s) 131, 1171, 1997, 2024, 2047, 2178
FokI GGATG 5 cut(s) 984, 1301, 1721, 2174, 2348
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 6 cut(s) 131, 1171, 1997, 2024, 2047, 2178
FspBI CTAG 3 cut(s) 761, 1607, 1650
GlaI GCGC 1 cut(s) 1995
GluI GCNGC 6 cut(s) 131, 1171, 1997, 2024, 2047, 2178
HaeIII GGCC 4 cut(s) 488, 688, 775, 1010
HapII CCGG 3 cut(s) 71, 1496, 2238
HgaI GACGC 2 cut(s) 71, 1662
HhaI GCGC 1 cut(s) 1996
Hin6I GCGC 1 cut(s) 1994
HinP1I GCGC 1 cut(s) 1994
HincII GTYRAC 1 cut(s) 2248
HindII GTYRAC 1 cut(s) 2248
HpaI GTTAAC 1 cut(s) 2248
HpaII CCGG 3 cut(s) 71, 1496, 2238
HphI GGTGA 6 cut(s) 65, 85, 199, 527, 1355, 1643
Hpy99I CGWCG 1 cut(s) 687
HpyAV CCTTC 4 cut(s) 616, 1263, 1322, 2142
HpyCH4III ACNGT 5 cut(s) 558, 932, 1456, 1681, 1824
HpyCH4IV ACGT 1 cut(s) 992
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 325, 351, 583, 1103, 1112, 2186
HpySE526I ACGT 1 cut(s) 992
HspAI GCGC 1 cut(s) 1994
Ksp22I TGATCA 1 cut(s) 234
KspAI GTTAAC 1 cut(s) 2248
Kzo9I GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
LmnI GCTCC 4 cut(s) 1102, 1321, 1834, 2240
Lsp1109I GCAGC 6 cut(s) 142, 1157, 1983, 2010, 2058, 2164
LweI GCATC 5 cut(s) 182, 738, 1279, 1967, 2152
MabI ACCWGGT 1 cut(s) 1516
MaeI CTAG 3 cut(s) 761, 1607, 1650
MaeII ACGT 1 cut(s) 992
MaeIII GTNAC 4 cut(s) 73, 768, 1480, 2084
MalI GATC 7 cut(s) 236, 429, 789, 1026, 1053, 1560, 2317
MboI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
MfeI CAATTG 1 cut(s) 417
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 2 cut(s) 267, 723
MlsI TGGCCA 1 cut(s) 1010
MluNI TGGCCA 1 cut(s) 1010
MlyI GAGTC 1 cut(s) 1772
MmeI TCCRAC 4 cut(s) 268, 479, 1006, 2018
Mox20I TGGCCA 1 cut(s) 1010
Mph1103I ATGCAT 1 cut(s) 1338
MroXI GAANNNNTTC 2 cut(s) 300, 1210
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 6 cut(s) 1421, 1451, 1775, 1815, 2064, 2247
MslI CAYNNNNRTG 1 cut(s) 1341
Msp20I TGGCCA 1 cut(s) 1010
MspA1I CMGCKG 1 cut(s) 2321
MspI CCGG 3 cut(s) 71, 1496, 2238
MspR9I CCNGG 5 cut(s) 71, 1476, 1518, 1749, 2313
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 4 cut(s) 399, 705, 1338, 2191
MvaI CCWGG 4 cut(s) 1476, 1518, 1749, 2313
MvnI CGCG 3 cut(s) 526, 1994, 2233
MwoI GCNNNNNNNGC 7 cut(s) 45, 325, 351, 583, 1103, 1112, 2186
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 2 cut(s) 846, 1011
NdeII GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
NlaIV GGNNCC 3 cut(s) 651, 891, 2229
NmeAIII GCCGAG 1 cut(s) 345
NmuCI GTSAC 1 cut(s) 73
NruI TCGCGA 1 cut(s) 526
NsiI ATGCAT 1 cut(s) 1338
NspI RCATGY 1 cut(s) 1158
NspV TTCGAA 1 cut(s) 112
PaeI GCATGC 1 cut(s) 1158
PaeR7I CTCGAG 1 cut(s) 1059
PceI AGGCCT 1 cut(s) 488
PctI GAATGC 4 cut(s) 399, 705, 1338, 2191
PdmI GAANNNNTTC 2 cut(s) 300, 1210
PfoI TCCNGGA 1 cut(s) 2311
PinAI ACCGGT 1 cut(s) 1495
PkrI GCNGC 6 cut(s) 132, 1172, 1998, 2025, 2048, 2179
PleI GAGTC 1 cut(s) 1771
PpsI GAGTC 1 cut(s) 1771
PpuMI RGGWCCY 1 cut(s) 2326
PsiI TTATAA 2 cut(s) 1512, 2075
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 2326
Psp6I CCWGG 4 cut(s) 1474, 1516, 1747, 2311
PspGI CCWGG 4 cut(s) 1474, 1516, 1747, 2311
PspN4I GGNNCC 3 cut(s) 651, 891, 2229
PspPI GGNCC 5 cut(s) 21, 889, 1529, 2309, 2326
PspPPI RGGWCCY 1 cut(s) 2326
PspXI VCTCGAGB 1 cut(s) 1059
PstI CTGCAG 1 cut(s) 2028
PstNI CAGNNNCTG 1 cut(s) 1170
PsuI RGATCY 1 cut(s) 787
PvuII CAGCTG 1 cut(s) 2321
RruI TCGCGA 1 cut(s) 526
RsaI GTAC 7 cut(s) 560, 844, 1302, 1594, 1656, 1683, 1796
RsaNI GTAC 7 cut(s) 559, 843, 1301, 1593, 1655, 1682, 1795
RseI CAYNNNNRTG 1 cut(s) 1341
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 6 cut(s) 1421, 1451, 1775, 1815, 2064, 2247
SatI GCNGC 6 cut(s) 131, 1171, 1997, 2024, 2047, 2178
Sau3AI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1558, 2315
Sau96I GGNCC 5 cut(s) 21, 889, 1529, 2309, 2326
SchI GAGTC 1 cut(s) 1772
ScrFI CCNGG 5 cut(s) 71, 1476, 1518, 1749, 2313
SduI GDGCHC 2 cut(s) 267, 723
SexAI ACCWGGT 1 cut(s) 1516
SfaNI GCATC 5 cut(s) 182, 738, 1279, 1967, 2152
SfcI CTRYAG 3 cut(s) 366, 2013, 2024
Sfr274I CTCGAG 1 cut(s) 1059
SfuI TTCGAA 1 cut(s) 112
SinI GGWCC 5 cut(s) 21, 889, 1529, 2309, 2326
SlaI CTCGAG 1 cut(s) 1059
SmiMI CAYNNNNRTG 1 cut(s) 1341
SmlI CTYRAG 4 cut(s) 266, 1059, 1101, 1758
SmoI CTYRAG 4 cut(s) 266, 1059, 1101, 1758
SphI GCATGC 1 cut(s) 1158
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 3 cut(s) 275, 823, 2231
SspMI CTAG 3 cut(s) 761, 1607, 1650
SstI GAGCTC 1 cut(s) 267
StuI AGGCCT 1 cut(s) 488
StyD4I CCNGG 5 cut(s) 69, 1474, 1516, 1747, 2311
StyI CCWWGG 2 cut(s) 846, 1011
TaaI ACNGT 5 cut(s) 558, 932, 1456, 1681, 1824
TaiI ACGT 1 cut(s) 995
TaqI TCGA 6 cut(s) 112, 201, 432, 1060, 1741, 2377
TatI WGTACW 1 cut(s) 1681
Tru1I TTAA 6 cut(s) 1421, 1451, 1775, 1815, 2064, 2247
Tru9I TTAA 6 cut(s) 1421, 1451, 1775, 1815, 2064, 2247
TscAI CASTG 1 cut(s) 2125
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 6 cut(s) 130, 1170, 1996, 2023, 2046, 2177
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 9 cut(s) 309, 476, 561, 566, 824, 1055, 1242, 1476, 1589
TspGWI ACGGA 7 cut(s) 13, 92, 671, 832, 973, 1369, 1794
TspRI CASTG 1 cut(s) 2125
VpaK11BI GGWCC 5 cut(s) 21, 889, 1529, 2309, 2326
XagI CCTNNNNNAGG 1 cut(s) 660
XapI RAATTY 5 cut(s) 86, 1209, 1218, 1243, 1729
XbaI TCTAGA 2 cut(s) 1606, 1649
XceI RCATGY 1 cut(s) 1158
XhoI CTCGAG 1 cut(s) 1059
XmnI GAANNNNTTC 2 cut(s) 300, 1210
XspI CTAG 3 cut(s) 761, 1607, 1650
Zsp2I ATGCAT 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.