Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002976.1

Orthogroup ID

OG0002842

Physical Location & Seq

Genomic Coordinates Forward (+)

25564 .. 26683

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002976.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgagcagtttagggtttaggtccgtggtctatcacggcgagctgtgcttgggtgagctcgacgctattccggtgacggaggggaaatttcagttcccgaacaacgagattcgaatccaccacatatcgcagcaaagtgaacgctgtccacccctctcagttctccaaacgatttcctcattttcggttagatgcaagctcgaatcggccacccctgttgaacagcctcatttgatcaacctccacgcctcctgtttctacgagctcaagacggcggtagtgttggttgggaatgaagagattcacttagtggcaatgccaagtaagcagaaaaagtttccgtgcttttggtgctattcggttcctttaggtctgtataatgcttctcttggaatgctgaacccaaggtgtctctcaattgtatttgatctcgacgagactctaattgttgccaacacaatgaagtcgtttgaggatagaattgaggctttacgaagctggattgcacgagagagtgaaacgtcgcgaatagccggaatgtctaatgaaatgaaacgttacattgacgataggtggttgttgaggcagtatatagataatgattgtgtggtggataacggacaggtgtataagattcaaatggaggaggttcctccactgtcaggtaaccacgagagaatccgtcggcccatcgttaggttgccagacaggaacatcgtgctcactcgcatcaatcccgaggtttggaagacttctatgcttgtttgttttctctgctctattgtttggctctgttctattgtttatttaattgtacaagtttcaatatctgcaaacttaactatttatgtgtgcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

286

Amino Acids

32.73

Weight (kDa)

6.39

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01270 AT5G01270
fragaria_vesca	FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640
malus_domestica	MD04G1150600.v1.1 MD04G1150700.v1.1 MD12G1164700.v1.1
prunus_persica	Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1
pyrus_communis	pycom04g13630 pycom12g15760
rosa_chinensis	RchiOBHm_Chr3g0463301
rosa_laevigata	RLG00000024792
rosa_multiflora	Rmu_co8080032.1_g000001 Rmu_sc0000923.1_g000001 Rmu_sc0002976.1_g000008 Rmu_sc0033161.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416690
rosa_rugosa	Rorug03G0063700 Rorug03G0063700
rosa_samantha	Rh3AG121600 Rh3BG126100 Rh3CG128000 Rh3DG127200
rosa_wichuraiana	Rw3G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	526
AciI	CCGC	1 cut(s)	275
AclI	AACGTT	1 cut(s)	556
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	86
AdeI	CACNNNGTG	1 cut(s)	310
AfaI	GTAC	1 cut(s)	816
AfiI	CCNNNNNNNGG	3 cut(s)	662, 696, 744
AgsI	TTSAA	3 cut(s)	221, 638, 825
AluBI	AGCT	5 cut(s)	43, 58, 199, 265, 498
AluI	AGCT	5 cut(s)	43, 58, 199, 265, 498
Alw21I	GWGCWC	3 cut(s)	60, 267, 723
Alw26I	GTCTC	2 cut(s)	416, 431
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	2 cut(s)	207, 686
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	86
Asp700I	GAANNNNTTC	1 cut(s)	300
AspS9I	GGNCC	2 cut(s)	21, 687
AsuHPI	GGTGA	2 cut(s)	65, 85
AsuII	TTCGAA	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	21
BanII	GRGCYC	2 cut(s)	60, 267
BauI	CACGAG	2 cut(s)	507, 671
BbsI	GAAGAC	1 cut(s)	755
Bbv12I	GWGCWC	3 cut(s)	60, 267, 723
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	1 cut(s)	698
BceAI	ACGGC	2 cut(s)	52, 288
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	416, 431
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	21, 687
BmiI	GGNNCC	2 cut(s)	363, 651
BmsI	GCATC	2 cut(s)	182, 738
BpiI	GAAGAC	1 cut(s)	755
Bpu14I	TTCGAA	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	24, 404, 738
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	662, 696, 744
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	3 cut(s)	24, 404, 738
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	3 cut(s)	662, 696, 744
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	2 cut(s)	209, 688
BsiHKAI	GWGCWC	3 cut(s)	60, 267, 723
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	2 cut(s)	71, 534
BslI	CCNNNNNNNGG	3 cut(s)	662, 696, 744
BsmAI	GTCTC	2 cut(s)	416, 431
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	2 cut(s)	209, 688
BsoBI	CYCGRG	1 cut(s)	737
Bsp119I	TTCGAA	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	60, 267, 723
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	2 cut(s)	234, 427
Bsp68I	TCGCGA	1 cut(s)	526
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	209, 688
BspCNI	CTCAG	1 cut(s)	170
BspFNI	CGCG	1 cut(s)	526
BspLI	GGNNCC	2 cut(s)	363, 651
BspT104I	TTCGAA	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	814
BssECI	CCNNGG	3 cut(s)	24, 404, 738
BssMI	GATC	2 cut(s)	234, 427
BssSI	CACGAG	2 cut(s)	507, 671
BssT1I	CCWWGG	1 cut(s)	404
Bst2BI	CACGAG	2 cut(s)	507, 671
Bst4CI	ACNGT	1 cut(s)	660
Bst6I	CTCTTC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	814
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	41, 197
BstDEI	CTNAG	2 cut(s)	157, 307
BstDSI	CCRYGG	1 cut(s)	24
BstEII	GGTNACC	1 cut(s)	665
BstFNI	CGCG	1 cut(s)	526
BstKTI	GATC	2 cut(s)	237, 430
BstMAI	GTCTC	2 cut(s)	416, 431
BstMBI	GATC	2 cut(s)	234, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 325, 351
BstPI	GGTNACC	1 cut(s)	665
BstUI	CGCG	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	209, 688
BtgI	CCRYGG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	656
BtuMI	TCGCGA	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	41, 197
Cfr13I	GGNCC	2 cut(s)	21, 687
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	815
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	2 cut(s)	157, 307
DpnI	GATC	2 cut(s)	236, 429
DpnII	GATC	2 cut(s)	234, 427
DraIII	CACNNNGTG	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	2 cut(s)	58, 265
Eco130I	CCWWGG	1 cut(s)	404
Eco24I	GRGCYC	2 cut(s)	60, 267
Eco47I	GGWCC	1 cut(s)	21
Eco53kI	GAGCTC	2 cut(s)	58, 265
Eco88I	CYCGRG	1 cut(s)	737
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	2 cut(s)	58, 265
EcoO65I	GGTNACC	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	60, 267
ErhI	CCWWGG	1 cut(s)	404
FaiI	YATR	7 cut(s)	125, 378, 591, 593, 630, 758, 849
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	131
FriOI	GRGCYC	2 cut(s)	60, 267
Fsp4HI	GCNGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	209, 688
HapII	CCGG	2 cut(s)	71, 534
HgaI	GACGC	1 cut(s)	71
HinfI	GANTC	7 cut(s)	109, 114, 203, 301, 439, 634, 678
HpaII	CCGG	2 cut(s)	71, 534
HphI	GGTGA	2 cut(s)	65, 85
Hpy166II	GTNNAC	2 cut(s)	140, 149
Hpy188III	TCNNGA	5 cut(s)	97, 268, 431, 525, 737
Hpy8I	GTNNAC	2 cut(s)	140, 149
Hpy99I	CGWCG	4 cut(s)	65, 437, 526, 687
HpyCH4III	ACNGT	1 cut(s)	660
HpyCH4IV	ACGT	2 cut(s)	521, 556
HpyCH4V	TGCA	4 cut(s)	195, 506, 833, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 325, 351
HpyF3I	CTNAG	2 cut(s)	157, 307
HpySE526I	ACGT	2 cut(s)	521, 556
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	234, 427
LpnPI	CCDG	9 cut(s)	84, 228, 265, 484, 547, 608, 648, 694, 717
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	2 cut(s)	182, 738
MaeII	ACGT	2 cut(s)	521, 556
MaeIII	GTNAC	3 cut(s)	73, 557, 665
MalI	GATC	2 cut(s)	236, 429
MboI	GATC	2 cut(s)	234, 427
MboII	GAAGA	2 cut(s)	308, 760
MfeI	CAATTG	2 cut(s)	417, 856
MhlI	GDGCHC	3 cut(s)	60, 267, 723
MluCI	AATT	6 cut(s)	86, 417, 444, 480, 810, 856
MlyI	GAGTC	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	2 cut(s)	809, 839
MspI	CCGG	2 cut(s)	71, 534
MunI	CAATTG	2 cut(s)	417, 856
Mva1269I	GAATGC	1 cut(s)	399
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	3 cut(s)	45, 325, 351
NdeII	GATC	2 cut(s)	234, 427
NlaIV	GGNNCC	2 cut(s)	363, 651
NmuCI	GTSAC	1 cut(s)	73
NruI	TCGCGA	1 cut(s)	526
NspV	TTCGAA	1 cut(s)	112
PctI	GAATGC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	300
PfeI	GAWTC	6 cut(s)	109, 114, 203, 301, 634, 678
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp124BI	GAGCTC	2 cut(s)	60, 267
Psp1406I	AACGTT	1 cut(s)	556
PspEI	GGTNACC	1 cut(s)	665
PspN4I	GGNNCC	2 cut(s)	363, 651
PspPI	GGNCC	2 cut(s)	21, 687
RruI	TCGCGA	1 cut(s)	526
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SacI	GAGCTC	2 cut(s)	60, 267
SaqAI	TTAA	2 cut(s)	809, 839
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	2 cut(s)	234, 427
Sau96I	GGNCC	2 cut(s)	21, 687
SchI	GAGTC	1 cut(s)	433
SduI	GDGCHC	3 cut(s)	60, 267, 723
SfaNI	GCATC	2 cut(s)	182, 738
SfuI	TTCGAA	1 cut(s)	112
SinI	GGWCC	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	6 cut(s)	86, 417, 444, 480, 810, 856
SsiI	CCGC	1 cut(s)	275
SstI	GAGCTC	2 cut(s)	60, 267
StyI	CCWWGG	1 cut(s)	404
TaaI	ACNGT	1 cut(s)	660
TaiI	ACGT	2 cut(s)	524, 559
TaqI	TCGA	4 cut(s)	60, 112, 201, 432
TasI	AATT	6 cut(s)	86, 417, 444, 480, 810, 856
TatI	WGTACW	1 cut(s)	814
TfiI	GAWTC	6 cut(s)	109, 114, 203, 301, 634, 678
Tru1I	TTAA	2 cut(s)	809, 839
Tru9I	TTAA	2 cut(s)	809, 839
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	4 cut(s)	309, 476, 561, 566
TspGWI	ACGGA	5 cut(s)	13, 92, 330, 633, 671
TspRI	CASTG	1 cut(s)	663
VpaK11BI	GGWCC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.