Rh3BG126100

RNA polymerase II C-terminal domain phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002842
Physical Location & Seq
Forward (+)
10359786 .. 10367092
7307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG126100.1

Sequence Viewer

Length: 2196 bp
ATGAGCAGTTTAGGGTTTAGGTCCGTGGTCTATCACGGCGAGCTGTGCTTGGGTGAGCTCGACGCTATTCCGGTGACGGAGGGGAAATTTCAGTTCCCGAACAACGAGATTCGAATCCACCACATATCGCAGCAAAGTGAACGCTGTCCACCCCTCTCAGTTCTCCAAACGATTTCCTCATTTTCGGTTAGATGCAAGCTCGAATCGGCCACCCCTGTAGAACAGCCTCATTTGATCAACCTCCACGCCTCCTGTTTCTACGAGCTCAAGACGGCGGTAGTGTTGGTTGGGAATGAAGAGATTCACTTGGTGGCAATGCCAAGTAAGCAGAAAAAGTTTCCGTGCTTTTGGTGCTATTCGGTTCCTTTAGGTCTGTATAATGCTTCTCTTGGAATGCTGAACCCAAGGTGTCTCTCAATTGTATTTGATCTCGACGAGACTCTAATTGTTGCCAACACAATGAAGTCATTTGAGGATAGAATTGAGGCTTTACGAAGCTGGATTGCACGAGAGAGTGAAACGTCGCGAATAGCCGGAATGTCTAATGAAATGAAACGTTACATTGACGATAGGTGGTTGTTGAGGCAGTATATAGATAATGATTGTGTGGTGGATAACGGACAGGTGTATAAGATTCAAATGGAGGAGGTTCCTCCACTGTCAGGTAACCACGAGAGAATCCGTCGGCCCATCGTTAGGTTGCCAGACAGGAACATCGTGCTCACTCGCATCAATCCCGAGGTTCGTGATACAAGTGTGCTGGTCAGGTTACGGCCTGCATGGGAAGATCTGAGAAGTTATTTAACAGCAAAAGGACGCAAGCGGTTTGAAGTTCATGTCTGTACGATGGCTGAAAGGGACTATGCATTAGAAATGTGGAGGCTTCTAGACCCAGAAGGACAACTAATAGGTTCAAAGCAACTTCTTGACCGTGTTGTTTGTGTCAAATCAGGTTCGCGGAAATCTTTACTCAATGTCTTCCAACTTGGAACGTGCCATCCAAAGATGGCCATGGTTATTGATGATCGTTCAAAGGTCTGGGAAGATAAGGATCAACCTCGAGTTCATGTAGTTCCAGCTTTTACTCCTTACTATGCTCCTCAAGCAGAGACAGCAAATGCCGTTCCTGTCCTCTGTGTAGCAAGAAATGTTGCATGCAATGTCAGGGGCTGCTTTTTTAAAGAGTTCGATGAGATTTTCTTGCGAAGAATTTCTGAAGTTTTTTATGAAGATGAGGTGGTAAATTTACCTCCTTCTCCTGATGTGAGTAATTACTTGATATCAGAGGATGCTGGTTTTGTACCAAATGGAATTGCTCCCCTTGGTGAAGGAATGCATGGTGGTGAAGTTGAACGGAGATTGAACCAACCTGATGATAAGGGTGTTATGGACTCAATGGCTTATTCTAATCATGCTGAGTTAAGACCTGACAACTCCCAGAAACCTGTAGCAACTGTCCTCAATGTCCCTGGTTCAACATCTTTGAGACCGGTCATGCCTACTCAGAAACCTAGTTTGCTTGGACCTCTTGTTAGACGAGATAGCTTTTCTGATCGTGATAATAACATGAAGAGAGGACTTCTTGGTACAAATCCTTGCCTAGATATAAGGAGTCAAAGCTCTGGTGAACCCCCAAATTCATCTAGAGTACCTGCACAAACTTCAACATCCACAGTACATGCACAAGGAGGATGGTTGGTGGATGATGACATGAAAAGAGGACATTTAAGTTTTCGACCTCCTGGTTCTGGTCAAGAGTCTGATGTCTTAAAACTTGAGAAGCTGATCCACCAGAATCCATTTAGTCTTAATAAACAGTCTGCTCCCACTGGTTTACCCTCACAGACATCTGAGGCAAGGAGGGAAGAGGTTAGCTCTGGACATGATTTCCCAAAGCAAAATCTTCCTTTTCCAAGTGTGTTATCAGAGGCTGGTGTGTCTCAGAATCAGGCATCTTCTTTTAAAAAAGAATCTGGAAAAGTGAACGCGCTGCCATCCCCTTTATCTATTGGTGTGCTGCAGGAAATCGGACGGAGATGCGGCTCAAAGGTAGAATTTAAGGCTGTTATAAGCACCAGTAACGATTTGCAGTTTTCTTTTGAGGTCAGTGGAAGTCAATGTATATTCAATTGTATTTCAGTAATTTTCGCTAAAACTTACAGAGCTCTTACTAATTCAATGAATACCCACATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NIF dsrm

Protein Analysis

731

Amino Acids

81.8

Weight (kDa)

6.99

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 245 - 356 9.4e-08 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2069
Acc36I ACCTGC 1 cut(s) 1660
AccII CGCG 3 cut(s) 526, 958, 1988
AciI CCGC 4 cut(s) 275, 823, 958, 2040
AclI AACGTT 1 cut(s) 556
AclWI GGATC 2 cut(s) 1059, 1780
AcoI YGGCCR 2 cut(s) 207, 1008
AcsI RAATTY 5 cut(s) 86, 1209, 1243, 1636, 2054
AcuI CTGAAG 1 cut(s) 1236
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 5 cut(s) 844, 1302, 1588, 1650, 1677
AfiI CCNNNNNNNGG 3 cut(s) 662, 696, 1748
AgeI ACCGGT 1 cut(s) 1489
AjnI CCWGG 2 cut(s) 1468, 1741
AloI GAACNNNNNNTCC 2 cut(s) 982, 1014
Alw21I GWGCWC 4 cut(s) 60, 267, 723, 2167
Alw26I GTCTC 5 cut(s) 416, 431, 1103, 1480, 1944
AlwI GGATC 2 cut(s) 1059, 1780
AlwNI CAGNNNCTG 2 cut(s) 1170, 1931
Ama87I CYCGRG 2 cut(s) 737, 1059
AoxI GGCC 4 cut(s) 207, 686, 773, 1008
ApeKI GCWGC 4 cut(s) 130, 1170, 1990, 2017
ApoI RAATTY 5 cut(s) 86, 1209, 1243, 1636, 2054
AsiGI ACCGGT 1 cut(s) 1489
Asp700I GAANNNNTTC 2 cut(s) 300, 1210
AspLEI GCGC 1 cut(s) 1990
AspS9I GGNCC 3 cut(s) 21, 687, 1523
AsuHPI GGTGA 5 cut(s) 65, 85, 1337, 1355, 1637
AsuII TTCGAA 1 cut(s) 112
AvaI CYCGRG 2 cut(s) 737, 1059
AvaII GGWCC 2 cut(s) 21, 1523
BaeI ACNNNNGTAYC 2 cut(s) 741, 774
BalI TGGCCA 1 cut(s) 1010
BanII GRGCYC 3 cut(s) 60, 267, 2167
BauI CACGAG 2 cut(s) 507, 671
BbsI GAAGAC 1 cut(s) 970
Bbv12I GWGCWC 4 cut(s) 60, 267, 723, 2167
BbvI GCAGC 4 cut(s) 142, 1157, 1977, 2004
BccI CCATC 6 cut(s) 698, 841, 1000, 1005, 1686, 2002
BceAI ACGGC 4 cut(s) 52, 288, 788, 1106
BciT130I CCWGG 2 cut(s) 1470, 1743
BclI TGATCA 1 cut(s) 234
BcoDI GTCTC 5 cut(s) 416, 431, 1103, 1480, 1944
BfaI CTAG 4 cut(s) 887, 1512, 1601, 1644
BfmI CTRYAG 3 cut(s) 216, 1446, 2018
BfuAI ACCTGC 1 cut(s) 1660
BglII AGATCT 1 cut(s) 787
BisI GCNGC 5 cut(s) 131, 1171, 1991, 2018, 2041
BlsI GCNGC 5 cut(s) 132, 1172, 1992, 2019, 2042
Bme1390I CCNGG 2 cut(s) 1470, 1743
Bme18I GGWCC 2 cut(s) 21, 1523
BmeT110I CYCGRG 2 cut(s) 737, 1059
BmgT120I GGNCC 3 cut(s) 21, 687, 1523
BmiI GGNNCC 2 cut(s) 363, 651
BmrFI CCNGG 2 cut(s) 1470, 1743
BmsI GCATC 5 cut(s) 182, 738, 1279, 1961, 2027
BpiI GAAGAC 1 cut(s) 970
BplI GAGNNNNNCTC 2 cut(s) 1859, 1891
Bpu14I TTCGAA 1 cut(s) 112
BpuEI CTTGAG 3 cut(s) 251, 1086, 1796
BsaBI GATNNNNATC 2 cut(s) 113, 1050
BsaI GGTCTC 1 cut(s) 1480
BsaJI CCNNGG 6 cut(s) 24, 404, 738, 1011, 1321, 1468
BsaWI WCCGGW 2 cut(s) 70, 1489
Bsc4I CCNNNNNNNGG 3 cut(s) 662, 696, 1748
Bse118I RCCGGY 1 cut(s) 1489
Bse1I ACTGG 2 cut(s) 1834, 2076
Bse3DI GCAATG 2 cut(s) 321, 1165
Bse8I GATNNNNATC 2 cut(s) 113, 1050
BseBI CCWGG 2 cut(s) 1470, 1743
BseDI CCNNGG 6 cut(s) 24, 404, 738, 1011, 1321, 1468
BseGI GGATG 6 cut(s) 997, 1294, 1667, 1697, 1708, 1994
BseJI GATNNNNATC 2 cut(s) 113, 1050
BseLI CCNNNNNNNGG 3 cut(s) 662, 696, 1748
BseMI GCAATG 2 cut(s) 321, 1165
BseMII CTCAG 6 cut(s) 171, 782, 1407, 1517, 1842, 1955
BseNI ACTGG 2 cut(s) 1834, 2076
BseRI GAGGAG 2 cut(s) 659, 1089
BseXI GCAGC 4 cut(s) 142, 1157, 1977, 2004
BsgI GTGCAG 1 cut(s) 1638
Bsh1236I CGCG 3 cut(s) 526, 958, 1988
BshFI GGCC 4 cut(s) 209, 688, 775, 1010
BshTI ACCGGT 1 cut(s) 1489
BsiHKAI GWGCWC 4 cut(s) 60, 267, 723, 2167
BsiHKCI CYCGRG 2 cut(s) 737, 1059
BsiSI CCGG 3 cut(s) 71, 534, 1490
BslFI GGGAC 2 cut(s) 872, 1451
BslI CCNNNNNNNGG 3 cut(s) 662, 696, 1748
BsmAI GTCTC 5 cut(s) 416, 431, 1103, 1480, 1944
BsmFI GGGAC 2 cut(s) 872, 1451
BsmI GAATGC 2 cut(s) 399, 1338
BsnI GGCC 4 cut(s) 209, 688, 775, 1010
Bso31I GGTCTC 1 cut(s) 1480
BsoBI CYCGRG 2 cut(s) 737, 1059
Bsp119I TTCGAA 1 cut(s) 112
Bsp1286I GDGCHC 4 cut(s) 60, 267, 723, 2167
Bsp143I GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
Bsp19I CCATGG 1 cut(s) 1011
Bsp68I TCGCGA 1 cut(s) 526
BspACI CCGC 4 cut(s) 275, 823, 958, 2040
BspANI GGCC 4 cut(s) 209, 688, 775, 1010
BspCNI CTCAG 6 cut(s) 170, 783, 1408, 1516, 1843, 1954
BspFNI CGCG 3 cut(s) 526, 958, 1988
BspLI GGNNCC 2 cut(s) 363, 651
BspMAI CTGCAG 1 cut(s) 2022
BspMI ACCTGC 1 cut(s) 1660
BspPI GGATC 2 cut(s) 1059, 1780
BspT104I TTCGAA 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 1480
BsrDI GCAATG 2 cut(s) 321, 1165
BsrFI RCCGGY 1 cut(s) 1489
BsrI ACTGG 2 cut(s) 1834, 2076
BssAI RCCGGY 1 cut(s) 1489
BssECI CCNNGG 6 cut(s) 24, 404, 738, 1011, 1321, 1468
BssMI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
BssSI CACGAG 2 cut(s) 507, 671
BssT1I CCWWGG 3 cut(s) 404, 1011, 1321
Bst2BI CACGAG 2 cut(s) 507, 671
Bst2UI CCWGG 2 cut(s) 1470, 1743
Bst4CI ACNGT 5 cut(s) 660, 932, 1456, 1675, 1818
Bst6I CTCTTC 3 cut(s) 291, 1565, 1860
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 5 cut(s) 41, 197, 777, 821, 1156
BstDEI CTNAG 6 cut(s) 157, 791, 1416, 1503, 1851, 1941
BstDSI CCRYGG 2 cut(s) 24, 1011
BstEII GGTNACC 1 cut(s) 665
BstF5I GGATG 6 cut(s) 997, 1294, 1667, 1697, 1708, 1994
BstFNI CGCG 3 cut(s) 526, 958, 1988
BstHHI GCGC 1 cut(s) 1990
BstKTI GATC 7 cut(s) 237, 430, 790, 1027, 1054, 1555, 1788
BstMAI GTCTC 5 cut(s) 416, 431, 1103, 1480, 1944
BstMBI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
BstMWI GCNNNNNNNGC 5 cut(s) 45, 325, 351, 1103, 1112
BstNI CCWGG 2 cut(s) 1470, 1743
BstNSI RCATGY 2 cut(s) 1158, 1682
BstPI GGTNACC 1 cut(s) 665
BstSCI CCNGG 2 cut(s) 1468, 1741
BstSFI CTRYAG 3 cut(s) 216, 1446, 2018
BstUI CGCG 3 cut(s) 526, 958, 1988
BstV1I GCAGC 4 cut(s) 142, 1157, 1977, 2004
BstV2I GAAGAC 1 cut(s) 970
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
BsuRI GGCC 4 cut(s) 209, 688, 775, 1010
BtgI CCRYGG 2 cut(s) 24, 1011
BtsCI GGATG 6 cut(s) 997, 1294, 1667, 1697, 1708, 1994
BtsIMutI CAGTG 3 cut(s) 656, 1827, 2113
BtuMI TCGCGA 1 cut(s) 526
BveI ACCTGC 1 cut(s) 1660
Cac8I GCNNGC 5 cut(s) 41, 197, 777, 821, 1156
CaiI CAGNNNCTG 2 cut(s) 1170, 1931
CfoI GCGC 1 cut(s) 1990
Cfr10I RCCGGY 1 cut(s) 1489
Cfr13I GGNCC 3 cut(s) 21, 687, 1523
CseI GACGC 2 cut(s) 71, 825
Csp6I GTAC 5 cut(s) 843, 1301, 1587, 1649, 1676
CspAI ACCGGT 1 cut(s) 1489
CviQI GTAC 5 cut(s) 843, 1301, 1587, 1649, 1676
DdeI CTNAG 6 cut(s) 157, 791, 1416, 1503, 1851, 1941
DpnI GATC 7 cut(s) 236, 429, 789, 1026, 1053, 1554, 1787
DpnII GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
DraI TTTAAA 2 cut(s) 1180, 1963
DraIII CACNNNGTG 1 cut(s) 310
EaeI YGGCCR 2 cut(s) 207, 1008
Eam1104I CTCTTC 3 cut(s) 291, 1565, 1860
EarI CTCTTC 3 cut(s) 291, 1565, 1860
Ecl136II GAGCTC 3 cut(s) 58, 265, 2165
Eco130I CCWWGG 3 cut(s) 404, 1011, 1321
Eco24I GRGCYC 3 cut(s) 60, 267, 2167
Eco31I GGTCTC 1 cut(s) 1480
Eco32I GATATC 1 cut(s) 1281
Eco47I GGWCC 2 cut(s) 21, 1523
Eco53kI GAGCTC 3 cut(s) 58, 265, 2165
Eco57I CTGAAG 1 cut(s) 1236
Eco88I CYCGRG 2 cut(s) 737, 1059
Eco91I GGTNACC 1 cut(s) 665
EcoICRI GAGCTC 3 cut(s) 58, 265, 2165
EcoO65I GGTNACC 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 1468, 1741
EcoRV GATATC 1 cut(s) 1281
EcoT14I CCWWGG 3 cut(s) 404, 1011, 1321
EcoT22I ATGCAT 2 cut(s) 868, 1338
EcoT38I GRGCYC 3 cut(s) 60, 267, 2167
ErhI CCWWGG 3 cut(s) 404, 1011, 1321
FaqI GGGAC 2 cut(s) 872, 1451
FbaI TGATCA 1 cut(s) 234
Fnu4HI GCNGC 5 cut(s) 131, 1171, 1991, 2018, 2041
FokI GGATG 6 cut(s) 984, 1301, 1654, 1704, 1715, 1981
FriOI GRGCYC 3 cut(s) 60, 267, 2167
Fsp4HI GCNGC 5 cut(s) 131, 1171, 1991, 2018, 2041
FspBI CTAG 4 cut(s) 887, 1512, 1601, 1644
GlaI GCGC 1 cut(s) 1989
GluI GCNGC 5 cut(s) 131, 1171, 1991, 2018, 2041
HaeIII GGCC 4 cut(s) 209, 688, 775, 1010
HapII CCGG 3 cut(s) 71, 534, 1490
HgaI GACGC 2 cut(s) 71, 825
HhaI GCGC 1 cut(s) 1990
Hin6I GCGC 1 cut(s) 1988
HinP1I GCGC 1 cut(s) 1988
HpaII CCGG 3 cut(s) 71, 534, 1490
HphI GGTGA 5 cut(s) 65, 85, 1337, 1355, 1637
Hpy166II GTNNAC 5 cut(s) 140, 149, 1628, 1835, 1984
Hpy8I GTNNAC 5 cut(s) 140, 149, 1628, 1835, 1984
Hpy99I CGWCG 4 cut(s) 65, 437, 526, 687
HpyAV CCTTC 3 cut(s) 890, 1263, 1322
HpyCH4III ACNGT 5 cut(s) 660, 932, 1456, 1675, 1818
HpyCH4IV ACGT 3 cut(s) 521, 556, 992
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 325, 351, 1103, 1112
HpyF3I CTNAG 6 cut(s) 157, 791, 1416, 1503, 1851, 1941
HpySE526I ACGT 3 cut(s) 521, 556, 992
HspAI GCGC 1 cut(s) 1988
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
LmnI GCTCC 3 cut(s) 1102, 1321, 1828
Lsp1109I GCAGC 4 cut(s) 142, 1157, 1977, 2004
LweI GCATC 5 cut(s) 182, 738, 1279, 1961, 2027
MaeI CTAG 4 cut(s) 887, 1512, 1601, 1644
MaeII ACGT 3 cut(s) 521, 556, 992
MaeIII GTNAC 5 cut(s) 73, 557, 665, 768, 2078
MalI GATC 7 cut(s) 236, 429, 789, 1026, 1053, 1554, 1787
MboI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
MfeI CAATTG 2 cut(s) 417, 2128
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 4 cut(s) 60, 267, 723, 2167
MlsI TGGCCA 1 cut(s) 1010
MluNI TGGCCA 1 cut(s) 1010
MlyI GAGTC 4 cut(s) 433, 1385, 1621, 1766
MmeI TCCRAC 1 cut(s) 1006
Mox20I TGGCCA 1 cut(s) 1010
Mph1103I ATGCAT 2 cut(s) 868, 1338
MroXI GAANNNNTTC 2 cut(s) 300, 1210
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 8 cut(s) 803, 1179, 1421, 1727, 1769, 1809, 1962, 2058
MslI CAYNNNNRTG 1 cut(s) 1341
Msp20I TGGCCA 1 cut(s) 1010
MspI CCGG 3 cut(s) 71, 534, 1490
MspR9I CCNGG 2 cut(s) 1470, 1743
MunI CAATTG 2 cut(s) 417, 2128
Mva1269I GAATGC 2 cut(s) 399, 1338
MvaI CCWGG 2 cut(s) 1470, 1743
MvnI CGCG 3 cut(s) 526, 958, 1988
MwoI GCNNNNNNNGC 5 cut(s) 45, 325, 351, 1103, 1112
NcoI CCATGG 1 cut(s) 1011
NdeII GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
NlaIV GGNNCC 2 cut(s) 363, 651
NmuCI GTSAC 1 cut(s) 73
NruI TCGCGA 1 cut(s) 526
NsiI ATGCAT 2 cut(s) 868, 1338
NspI RCATGY 2 cut(s) 1158, 1682
NspV TTCGAA 1 cut(s) 112
PaeI GCATGC 1 cut(s) 1158
PaeR7I CTCGAG 1 cut(s) 1059
PctI GAATGC 2 cut(s) 399, 1338
PdmI GAANNNNTTC 2 cut(s) 300, 1210
PfeI GAWTC 9 cut(s) 109, 114, 203, 301, 634, 678, 1795, 1945, 1970
PinAI ACCGGT 1 cut(s) 1489
PkrI GCNGC 5 cut(s) 132, 1172, 1992, 2019, 2042
PleI GAGTC 4 cut(s) 433, 1385, 1620, 1765
PpsI GAGTC 4 cut(s) 433, 1385, 1620, 1765
PsiI TTATAA 1 cut(s) 2069
Psp124BI GAGCTC 3 cut(s) 60, 267, 2167
Psp1406I AACGTT 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 1468, 1741
PspEI GGTNACC 1 cut(s) 665
PspGI CCWGG 2 cut(s) 1468, 1741
PspN4I GGNNCC 2 cut(s) 363, 651
PspPI GGNCC 3 cut(s) 21, 687, 1523
PspXI VCTCGAGB 1 cut(s) 1059
PstI CTGCAG 1 cut(s) 2022
PstNI CAGNNNCTG 2 cut(s) 1170, 1931
PsuI RGATCY 1 cut(s) 787
RruI TCGCGA 1 cut(s) 526
RsaI GTAC 5 cut(s) 844, 1302, 1588, 1650, 1677
RsaNI GTAC 5 cut(s) 843, 1301, 1587, 1649, 1676
RseI CAYNNNNRTG 1 cut(s) 1341
SacI GAGCTC 3 cut(s) 60, 267, 2167
SaqAI TTAA 8 cut(s) 803, 1179, 1421, 1727, 1769, 1809, 1962, 2058
SatI GCNGC 5 cut(s) 131, 1171, 1991, 2018, 2041
Sau3AI GATC 7 cut(s) 234, 427, 787, 1024, 1051, 1552, 1785
Sau96I GGNCC 3 cut(s) 21, 687, 1523
SchI GAGTC 4 cut(s) 433, 1385, 1621, 1766
ScrFI CCNGG 2 cut(s) 1470, 1743
SduI GDGCHC 4 cut(s) 60, 267, 723, 2167
SfaNI GCATC 5 cut(s) 182, 738, 1279, 1961, 2027
SfcI CTRYAG 3 cut(s) 216, 1446, 2018
Sfr274I CTCGAG 1 cut(s) 1059
SfuI TTCGAA 1 cut(s) 112
SinI GGWCC 2 cut(s) 21, 1523
SlaI CTCGAG 1 cut(s) 1059
SmiMI CAYNNNNRTG 1 cut(s) 1341
SmlI CTYRAG 4 cut(s) 266, 1059, 1101, 1775
SmoI CTYRAG 4 cut(s) 266, 1059, 1101, 1775
SphI GCATGC 1 cut(s) 1158
SsiI CCGC 4 cut(s) 275, 823, 958, 2040
SspMI CTAG 4 cut(s) 887, 1512, 1601, 1644
SstI GAGCTC 3 cut(s) 60, 267, 2167
StyD4I CCNGG 2 cut(s) 1468, 1741
StyI CCWWGG 3 cut(s) 404, 1011, 1321
TaaI ACNGT 5 cut(s) 660, 932, 1456, 1675, 1818
TaiI ACGT 3 cut(s) 524, 559, 995
TaqI TCGA 7 cut(s) 60, 112, 201, 432, 1060, 1188, 1735
TatI WGTACW 1 cut(s) 1675
TauI GCSGC 1 cut(s) 2043
TfiI GAWTC 9 cut(s) 109, 114, 203, 301, 634, 678, 1795, 1945, 1970
Tru1I TTAA 8 cut(s) 803, 1179, 1421, 1727, 1769, 1809, 1962, 2058
Tru9I TTAA 8 cut(s) 803, 1179, 1421, 1727, 1769, 1809, 1962, 2058
TscAI CASTG 3 cut(s) 663, 1834, 2113
TseFI GTSAC 1 cut(s) 73
TseI GCWGC 4 cut(s) 130, 1170, 1990, 2017
Tsp45I GTSAC 1 cut(s) 73
TspGWI ACGGA 7 cut(s) 13, 92, 330, 633, 671, 1369, 2047
TspRI CASTG 3 cut(s) 663, 1834, 2113
VpaK11BI GGWCC 2 cut(s) 21, 1523
XapI RAATTY 5 cut(s) 86, 1209, 1243, 1636, 2054
XbaI TCTAGA 2 cut(s) 886, 1643
XceI RCATGY 2 cut(s) 1158, 1682
XhoI CTCGAG 1 cut(s) 1059
XmnI GAANNNNTTC 2 cut(s) 300, 1210
XspI CTAG 4 cut(s) 887, 1512, 1601, 1644
Zsp2I ATGCAT 2 cut(s) 868, 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.