Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8080032.1

Orthogroup ID

OG0002842

Physical Location & Seq

Genomic Coordinates Reverse (-)

108 .. 446

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8080032.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgagcagtttagggtttaggtccgtggtctatcacggcgagctgtgcttgggtgagctcgacgctattccggtgacggaggggaaatttcagttcccgaacaacgagattcgaatccaccacatatcgcagcaaagtgaacgctgtccacccctctcagttctccaaacgatttcctcattttcggttagatgcaagctcgaatcggccacccctgtagaacagcctcatttgatcaacctccacgcctcctgtttctacgagctcaaggtccactcaatcgattgttttccgttttcgtttcgagttattggttcagatttctggttaacatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

112

Amino Acids

12.7

Weight (kDa)

6.02

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01270 AT5G01270
fragaria_vesca	FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640
malus_domestica	MD04G1150600.v1.1 MD04G1150700.v1.1 MD12G1164700.v1.1
prunus_persica	Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1
pyrus_communis	pycom04g13630 pycom12g15760
rosa_chinensis	RchiOBHm_Chr3g0463301
rosa_laevigata	RLG00000024792
rosa_multiflora	Rmu_co8080032.1_g000001 Rmu_sc0000923.1_g000001 Rmu_sc0002976.1_g000008 Rmu_sc0033161.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416690
rosa_rugosa	Rorug03G0063700 Rorug03G0063700
rosa_samantha	Rh3AG121600 Rh3BG126100 Rh3CG128000 Rh3DG127200
rosa_wichuraiana	Rw3G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	86
AluBI	AGCT	4 cut(s)	43, 58, 199, 265
AluI	AGCT	4 cut(s)	43, 58, 199, 265
Alw21I	GWGCWC	2 cut(s)	60, 267
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	21, 271
AsuHPI	GGTGA	2 cut(s)	65, 85
AsuII	TTCGAA	1 cut(s)	112
AvaII	GGWCC	2 cut(s)	21, 271
BanII	GRGCYC	2 cut(s)	60, 267
Bbv12I	GWGCWC	2 cut(s)	60, 267
BbvI	GCAGC	1 cut(s)	142
BceAI	ACGGC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme18I	GGWCC	2 cut(s)	21, 271
BmgT120I	GGNCC	2 cut(s)	21, 271
BmsI	GCATC	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	70
Bse8I	GATNNNNATC	1 cut(s)	113
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	24
BseJI	GATNNNNATC	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	142
BshFI	GGCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	60, 267
BsiSI	CCGG	1 cut(s)	71
BsnI	GGCC	1 cut(s)	209
Bsp119I	TTCGAA	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	60, 267
Bsp143I	GATC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	170
BspDI	ATCGAT	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	41, 197
BstDEI	CTNAG	1 cut(s)	157
BstDSI	CCRYGG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	336
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	209
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	41, 197
Cfr13I	GGNCC	2 cut(s)	21, 271
ClaI	ATCGAT	1 cut(s)	282
CseI	GACGC	1 cut(s)	71
CviAII	CATG	1 cut(s)	333
CviJI	RGCY	6 cut(s)	43, 58, 199, 209, 226, 265
CviKI_1	RGCY	6 cut(s)	43, 58, 199, 209, 226, 265
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	1 cut(s)	236
DpnII	GATC	1 cut(s)	234
EaeI	YGGCCR	1 cut(s)	207
Ecl136II	GAGCTC	2 cut(s)	58, 265
Eco24I	GRGCYC	2 cut(s)	60, 267
Eco47I	GGWCC	2 cut(s)	21, 271
Eco53kI	GAGCTC	2 cut(s)	58, 265
EcoICRI	GAGCTC	2 cut(s)	58, 265
EcoT38I	GRGCYC	2 cut(s)	60, 267
FaeI	CATG	1 cut(s)	336
FaiI	YATR	2 cut(s)	125, 334
FatI	CATG	1 cut(s)	332
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	131
FriOI	GRGCYC	2 cut(s)	60, 267
Fsp4HI	GCNGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	336
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	3 cut(s)	109, 114, 203
HpaI	GTTAAC	1 cut(s)	330
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	2 cut(s)	65, 85
Hpy166II	GTNNAC	4 cut(s)	140, 149, 274, 330
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	4 cut(s)	140, 149, 274, 330
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	336
Ksp22I	TGATCA	1 cut(s)	234
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	234
LpnPI	CCDG	4 cut(s)	84, 228, 265, 310
Lsp1109I	GCAGC	1 cut(s)	142
LweI	GCATC	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	236
MboI	GATC	1 cut(s)	234
MhlI	GDGCHC	2 cut(s)	60, 267
MluCI	AATT	1 cut(s)	86
MnlI	CCTC	6 cut(s)	73, 164, 187, 237, 251, 259
MseI	TTAA	1 cut(s)	329
MspI	CCGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	45
NdeII	GATC	1 cut(s)	234
NlaIII	CATG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	336
NspV	TTCGAA	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	109, 114, 203
PkrI	GCNGC	1 cut(s)	132
Psp124BI	GAGCTC	2 cut(s)	60, 267
PspPI	GGNCC	2 cut(s)	21, 271
SacI	GAGCTC	2 cut(s)	60, 267
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	1 cut(s)	234
Sau96I	GGNCC	2 cut(s)	21, 271
SduI	GDGCHC	2 cut(s)	60, 267
SetI	ASST	7 cut(s)	23, 45, 60, 201, 243, 267, 273
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	112
SinI	GGWCC	2 cut(s)	21, 271
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	86
SstI	GAGCTC	2 cut(s)	60, 267
TaqI	TCGA	5 cut(s)	60, 112, 201, 282, 304
TasI	AATT	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	109, 114, 203
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	73
TspGWI	ACGGA	3 cut(s)	13, 92, 282
VpaK11BI	GGWCC	2 cut(s)	21, 271
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.