Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002842

Physical Location & Seq

Genomic Coordinates Forward (+)

10731930 .. 10738813

Gene Structure 6884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG127200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGCCAAGTAAGCAGAAAAAGTTTCCGTGCTTTTGGTGCTATTCGGTTCCTTTAGGTCTGTATAATGCTTCTCTTGGAATGCTGAACCCAAGGTGTCTCTCAATTGTATTTGATCTCGACGAGACTCTAATTGTTGCCAACACAATGAAGTCGTTTGAGGATAGAATTGAGGCTTTACGAAGCTGGATTGCACGAGAGAGTGAAACGTCGCGAATAGCCGGAATGTCTAATGAAATGAAACGTTACATTGACGATAGGTGGTTGTTGAGGCAGTATATAGATAATGATTGTGTGGTGGATAACGGACAGGTGTATAAGATTCAAATGGAGGAGGTTCCTCCACTGTCAGGTAACCACGAGAGAATCCGTCGGCCCATCGTTAGGTTGCCAGACAGGAACATCGTGCTCACTCGCATCAATCCCGAGGTTCGTGATACAAGTGTGCTGGTCAGGTTACGGCCTGCATGGGAAGATCTGAGAAGTTATTTAACAGCAAAAGGACGCAAGCGGTTTGAAGTTCATGTCTGTACGATGGCTGAAAGGGACTATGCATTAGAAATGTGGAGGCTTCTAGATCCAGAAGGACAACTAATAGGTTCAAAGCAACTTCTTGACCGTGTTGTTTGTGTCAAATCAGGTTCGCGGAAATCTTTACTCAATGTCTTCCAACTTGGAACGTGCCATCCAAAGATGGCCATGGTTATTGATGATCGTTCAAAGGTCTGGGAAGATAAGGATCAACCTCGAGTTCATGTAGTTCCAGCTTTTACTCCTTACTATGCTCCTCAAGCAGAGACAGCAAATGCCGTTCCTGTCCTCTGTGTAGCAAGAAATGTTGCATGCAATGTCAGGGGCTGCTTTTTTAAAGAGTTCGATGAGATTTTCTTGCGAAGAATTTCTGAAGTTTTTTATGAAGATGAGGTGGTAAATTTACCTCCTTCTCCTGATGTGAGTAATTACTTGATATCAGAGGATGCTGGTTTTGTACCAAATGGAATTGCTCCCCTTGGTGAAGGAATGCATGGTGGTGAAGTTGAACGGAGATTGAACCAACCTGATGATAAGGGTGTTATGGACTCAATGGCTTATTCTAATCATGCTGAGTTAAGGCCTGACAACTCCCAGAAACCTGTAGCAACTGTCCTCAATGTCCCTGGTTCAACATCTTTGAGACCGGTCATGCCTACTCAGAAACCTAGTTTGCTTGGACCTCTTGTTAGACGAGATAGCTTTTCTGATCGTGATAATAACATGAAGAGAGGACTTCTTGGTACAAATCCTTGCCTAGATATAAGGAGTCAAAGCTCTGGTGAACCCCCAAATTCATCTAGAGTACCTGCACAAACTTCAACATCCACAGTACATGCACAAGGAGGATGGTTGGTGGATGATGACATGAAAAGAGGACATTTAAGTTTTCGACCTCCTGGTTCTGGTCAAGAGTCTGATGTCTTAAAACTTGAGAAGCTGATCCACCAGAATCCATTTAGTCTTAATAAACAGTCTGCTCCCACTGGTTTACCCTCACAGACATCTGAGGCAAGGAGGGAAGAGGTTAGCTCTGGACATGATTTCCCAAAGCAAAATCTTCCTTTTCCAAGTGTGTTATCAGAGGCTGGTGTGTCTCAGAATCAGGCATCTTCTTTTAAAAAAGAATCTGGAAAAGTGAACGCGCTGCCATCCCCTTTATCTATTGGTGTGCTGCAGGAAATCGGACGGAGATGCGGCTCAAAGGTTGAATTTAAGGCTGTTATAAGCACCAGTAACGATTTGCAGTTTTCTTTTGAGGTGCTCTTCACTGGGGAGAAGATAGGTTTTGGAACAGGAAGGACAAGAAAGGATGCTCAACAACAGGCTGCTGAGAATGCACTTCACAGCTTGGCTGAAAAATATGTCTCATATATTGCACCGCAATCTGGAGCAGTGGACAAAGATTTTGATAAACTCTCTCTTGGAAATGAAAACGGATTTGTTTTGGACATAGTTGGTCCAGGATCAGCTGAGTGGCTAACGGAAGATGGATTGCCAAAAGAAAGTACTTCTGAGGTGGGGACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF dsrm

Protein Analysis

686

Amino Acids

76.43

Weight (kDa)

6.33

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	140 - 251	8.5e-08	NLI interacting factor-like phosphatase
dsrm	PF00035	565 - 627	1.8e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01270 AT5G01270
fragaria_vesca	FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640 FvH4_6g11640
malus_domestica	MD04G1150600.v1.1 MD04G1150700.v1.1 MD12G1164700.v1.1
prunus_persica	Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1 Prupe.6G275400_v2.0.a1
pyrus_communis	pycom04g13630 pycom12g15760
rosa_chinensis	RchiOBHm_Chr3g0463301
rosa_laevigata	RLG00000024792
rosa_multiflora	Rmu_co8080032.1_g000001 Rmu_sc0000923.1_g000001 Rmu_sc0002976.1_g000008 Rmu_sc0033161.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416690
rosa_rugosa	Rorug03G0063700 Rorug03G0063700
rosa_samantha	Rh3AG121600 Rh3BG126100 Rh3CG128000 Rh3DG127200
rosa_wichuraiana	Rw3G010330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1754
Acc36I	ACCTGC	1 cut(s)	1345
AccII	CGCG	3 cut(s)	211, 643, 1673
AciI	CCGC	4 cut(s)	508, 643, 1725, 1910
AclI	AACGTT	1 cut(s)	241
AclWI	GGATC	4 cut(s)	569, 744, 1465, 2002
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	4 cut(s)	894, 928, 1321, 1739
AcuI	CTGAAG	1 cut(s)	921
AfaI	GTAC	6 cut(s)	529, 987, 1273, 1335, 1362, 2038
AfiI	CCNNNNNNNGG	4 cut(s)	347, 381, 1433, 1916
AgeI	ACCGGT	1 cut(s)	1174
AgsI	TTSAA	9 cut(s)	323, 515, 600, 717, 1037, 1048, 1161, 1350, 1739
AjnI	CCWGG	3 cut(s)	1153, 1426, 1990
AloI	GAACNNNNNNTCC	2 cut(s)	667, 699
AluBI	AGCT	8 cut(s)	183, 764, 1230, 1305, 1468, 1560, 1878, 2000
AluI	AGCT	8 cut(s)	183, 764, 1230, 1305, 1468, 1560, 1878, 2000
Alw21I	GWGCWC	2 cut(s)	408, 1794
Alw26I	GTCTC	6 cut(s)	101, 116, 788, 1165, 1629, 1900
AlwI	GGATC	4 cut(s)	569, 744, 1465, 2002
AlwNI	CAGNNNCTG	2 cut(s)	855, 1616
Ama87I	CYCGRG	2 cut(s)	422, 744
AoxI	GGCC	4 cut(s)	371, 458, 693, 1109
ApeKI	GCWGC	4 cut(s)	855, 1675, 1702, 1856
ApoI	RAATTY	4 cut(s)	894, 928, 1321, 1739
ArsI	GACNNNNNNTTYG	2 cut(s)	1919, 1951
AsiGI	ACCGGT	1 cut(s)	1174
Asp700I	GAANNNNTTC	1 cut(s)	895
AspLEI	GCGC	1 cut(s)	1675
AspS9I	GGNCC	3 cut(s)	372, 1208, 1988
AsuHPI	GGTGA	3 cut(s)	1022, 1040, 1322
AvaI	CYCGRG	2 cut(s)	422, 744
AvaII	GGWCC	2 cut(s)	1208, 1988
BaeI	ACNNNNGTAYC	2 cut(s)	426, 459
BalI	TGGCCA	1 cut(s)	695
BauI	CACGAG	2 cut(s)	192, 356
BbsI	GAAGAC	1 cut(s)	655
Bbv12I	GWGCWC	2 cut(s)	408, 1794
BbvI	GCAGC	4 cut(s)	842, 1662, 1689, 1843
BccI	CCATC	7 cut(s)	383, 526, 685, 690, 1371, 1687, 2012
BceAI	ACGGC	2 cut(s)	473, 791
BciT130I	CCWGG	3 cut(s)	1155, 1428, 1992
BcoDI	GTCTC	6 cut(s)	101, 116, 788, 1165, 1629, 1900
BfaI	CTAG	4 cut(s)	572, 1197, 1286, 1329
BfmI	CTRYAG	2 cut(s)	1131, 1703
BfuAI	ACCTGC	1 cut(s)	1345
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	5 cut(s)	856, 1676, 1703, 1726, 1857
BlsI	GCNGC	5 cut(s)	857, 1677, 1704, 1727, 1858
BmcAI	AGTACT	1 cut(s)	2038
Bme1390I	CCNGG	3 cut(s)	1155, 1428, 1992
Bme18I	GGWCC	2 cut(s)	1208, 1988
BmeT110I	CYCGRG	2 cut(s)	422, 744
BmgT120I	GGNCC	3 cut(s)	372, 1208, 1988
BmiI	GGNNCC	2 cut(s)	48, 336
BmrFI	CCNGG	3 cut(s)	1155, 1428, 1992
BmrI	ACTGGG	1 cut(s)	1809
BmsI	GCATC	5 cut(s)	423, 964, 1646, 1712, 1831
BmuI	ACTGGG	1 cut(s)	1809
BpiI	GAAGAC	1 cut(s)	655
BplI	GAGNNNNNCTC	2 cut(s)	1544, 1576
BpmI	CTGGAG	1 cut(s)	1938
BpuEI	CTTGAG	2 cut(s)	771, 1481
BsaBI	GATNNNNATC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	1165
BsaJI	CCNNGG	5 cut(s)	89, 423, 696, 1006, 1153
BsaWI	WCCGGW	1 cut(s)	1174
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 381, 1433, 1916
Bse118I	RCCGGY	1 cut(s)	1174
Bse1I	ACTGG	3 cut(s)	1519, 1761, 1804
Bse3DI	GCAATG	1 cut(s)	850
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	3 cut(s)	1155, 1428, 1992
BseDI	CCNNGG	5 cut(s)	89, 423, 696, 1006, 1153
BseGI	GGATG	7 cut(s)	682, 979, 1352, 1382, 1393, 1679, 1846
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	4 cut(s)	347, 381, 1433, 1916
BseMI	GCAATG	1 cut(s)	850
BseMII	CTCAG	8 cut(s)	467, 1092, 1202, 1527, 1640, 1851, 1992, 2034
BseNI	ACTGG	3 cut(s)	1519, 1761, 1804
BseRI	GAGGAG	2 cut(s)	344, 774
BseXI	GCAGC	4 cut(s)	842, 1662, 1689, 1843
BsgI	GTGCAG	1 cut(s)	1323
Bsh1236I	CGCG	3 cut(s)	211, 643, 1673
BshFI	GGCC	4 cut(s)	373, 460, 695, 1111
BshTI	ACCGGT	1 cut(s)	1174
BsiHKAI	GWGCWC	2 cut(s)	408, 1794
BsiHKCI	CYCGRG	2 cut(s)	422, 744
BsiSI	CCGG	2 cut(s)	219, 1175
BslFI	GGGAC	2 cut(s)	557, 1136
BslI	CCNNNNNNNGG	4 cut(s)	347, 381, 1433, 1916
BsmAI	GTCTC	6 cut(s)	101, 116, 788, 1165, 1629, 1900
BsmFI	GGGAC	2 cut(s)	557, 1136
BsmI	GAATGC	3 cut(s)	84, 1023, 1870
BsnI	GGCC	4 cut(s)	373, 460, 695, 1111
Bso31I	GGTCTC	1 cut(s)	1165
BsoBI	CYCGRG	2 cut(s)	422, 744
Bsp1286I	GDGCHC	2 cut(s)	408, 1794
Bsp143I	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
Bsp19I	CCATGG	1 cut(s)	696
Bsp68I	TCGCGA	1 cut(s)	211
BspACI	CCGC	4 cut(s)	508, 643, 1725, 1910
BspANI	GGCC	4 cut(s)	373, 460, 695, 1111
BspCNI	CTCAG	8 cut(s)	468, 1093, 1201, 1528, 1639, 1852, 1993, 2035
BspFNI	CGCG	3 cut(s)	211, 643, 1673
BspLI	GGNNCC	2 cut(s)	48, 336
BspMAI	CTGCAG	1 cut(s)	1707
BspMI	ACCTGC	1 cut(s)	1345
BspPI	GGATC	4 cut(s)	569, 744, 1465, 2002
BspQI	GCTCTTC	1 cut(s)	1799
BspTNI	GGTCTC	1 cut(s)	1165
BsrDI	GCAATG	1 cut(s)	850
BsrFI	RCCGGY	1 cut(s)	1174
BsrI	ACTGG	3 cut(s)	1519, 1761, 1804
BssAI	RCCGGY	1 cut(s)	1174
BssECI	CCNNGG	5 cut(s)	89, 423, 696, 1006, 1153
BssMI	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
BssSI	CACGAG	2 cut(s)	192, 356
BssT1I	CCWWGG	3 cut(s)	89, 696, 1006
Bst2BI	CACGAG	2 cut(s)	192, 356
Bst2UI	CCWGG	3 cut(s)	1155, 1428, 1992
Bst4CI	ACNGT	5 cut(s)	345, 617, 1141, 1360, 1503
Bst6I	CTCTTC	3 cut(s)	1250, 1545, 1799
BstC8I	GCNNGC	3 cut(s)	462, 506, 841
BstDEI	CTNAG	8 cut(s)	476, 1101, 1188, 1536, 1626, 1860, 2001, 2043
BstDSI	CCRYGG	1 cut(s)	696
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	7 cut(s)	682, 979, 1352, 1382, 1393, 1679, 1846
BstFNI	CGCG	3 cut(s)	211, 643, 1673
BstHHI	GCGC	1 cut(s)	1675
BstKTI	GATC	8 cut(s)	115, 475, 577, 712, 739, 1240, 1473, 1997
BstMAI	GTCTC	6 cut(s)	101, 116, 788, 1165, 1629, 1900
BstMBI	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 36, 788, 797, 1865
BstNI	CCWGG	3 cut(s)	1155, 1428, 1992
BstNSI	RCATGY	2 cut(s)	843, 1367
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	3 cut(s)	1153, 1426, 1990
BstSFI	CTRYAG	2 cut(s)	1131, 1703
BstUI	CGCG	3 cut(s)	211, 643, 1673
BstV1I	GCAGC	4 cut(s)	842, 1662, 1689, 1843
BstV2I	GAAGAC	1 cut(s)	655
BstX2I	RGATCY	2 cut(s)	472, 574
BstYI	RGATCY	2 cut(s)	472, 574
BsuRI	GGCC	4 cut(s)	373, 460, 695, 1111
BtgI	CCRYGG	1 cut(s)	696
BtsCI	GGATG	7 cut(s)	682, 979, 1352, 1382, 1393, 1679, 1846
BtsI	GCAGTG	1 cut(s)	1929
BtsIMutI	CAGTG	4 cut(s)	341, 1512, 1797, 1929
BtuMI	TCGCGA	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	1345
Cac8I	GCNNGC	3 cut(s)	462, 506, 841
CaiI	CAGNNNCTG	2 cut(s)	855, 1616
CfoI	GCGC	1 cut(s)	1675
Cfr10I	RCCGGY	1 cut(s)	1174
Cfr13I	GGNCC	3 cut(s)	372, 1208, 1988
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	6 cut(s)	528, 986, 1272, 1334, 1361, 2037
CspAI	ACCGGT	1 cut(s)	1174
CviQI	GTAC	6 cut(s)	528, 986, 1272, 1334, 1361, 2037
DdeI	CTNAG	8 cut(s)	476, 1101, 1188, 1536, 1626, 1860, 2001, 2043
DpnI	GATC	8 cut(s)	114, 474, 576, 711, 738, 1239, 1472, 1996
DpnII	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
DraI	TTTAAA	2 cut(s)	865, 1648
EaeI	YGGCCR	1 cut(s)	693
Eam1104I	CTCTTC	3 cut(s)	1250, 1545, 1799
EarI	CTCTTC	3 cut(s)	1250, 1545, 1799
Eco130I	CCWWGG	3 cut(s)	89, 696, 1006
Eco147I	AGGCCT	1 cut(s)	1111
Eco31I	GGTCTC	1 cut(s)	1165
Eco32I	GATATC	1 cut(s)	966
Eco47I	GGWCC	2 cut(s)	1208, 1988
Eco57I	CTGAAG	1 cut(s)	921
Eco88I	CYCGRG	2 cut(s)	422, 744
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	1153, 1426, 1990
EcoRV	GATATC	1 cut(s)	966
EcoT14I	CCWWGG	3 cut(s)	89, 696, 1006
EcoT22I	ATGCAT	2 cut(s)	553, 1023
ErhI	CCWWGG	3 cut(s)	89, 696, 1006
FaqI	GGGAC	2 cut(s)	557, 1136
Fnu4HI	GCNGC	5 cut(s)	856, 1676, 1703, 1726, 1857
FokI	GGATG	7 cut(s)	669, 986, 1339, 1389, 1400, 1666, 1853
Fsp4HI	GCNGC	5 cut(s)	856, 1676, 1703, 1726, 1857
FspBI	CTAG	4 cut(s)	572, 1197, 1286, 1329
GlaI	GCGC	1 cut(s)	1674
GluI	GCNGC	5 cut(s)	856, 1676, 1703, 1726, 1857
GsuI	CTGGAG	1 cut(s)	1938
HaeIII	GGCC	4 cut(s)	373, 460, 695, 1111
HapII	CCGG	2 cut(s)	219, 1175
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	1675
Hin6I	GCGC	1 cut(s)	1673
HinP1I	GCGC	1 cut(s)	1673
HpaII	CCGG	2 cut(s)	219, 1175
HphI	GGTGA	3 cut(s)	1022, 1040, 1322
Hpy166II	GTNNAC	4 cut(s)	1313, 1520, 1669, 1927
Hpy8I	GTNNAC	4 cut(s)	1313, 1520, 1669, 1927
Hpy99I	CGWCG	3 cut(s)	122, 211, 372
HpyAV	CCTTC	4 cut(s)	575, 948, 1007, 1821
HpyCH4III	ACNGT	5 cut(s)	345, 617, 1141, 1360, 1503
HpyCH4IV	ACGT	3 cut(s)	206, 241, 677
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 36, 788, 797, 1865
HpyF3I	CTNAG	8 cut(s)	476, 1101, 1188, 1536, 1626, 1860, 2001, 2043
HpySE526I	ACGT	3 cut(s)	206, 241, 677
HspAI	GCGC	1 cut(s)	1673
Kzo9I	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
LguI	GCTCTTC	1 cut(s)	1799
LmnI	GCTCC	4 cut(s)	787, 1006, 1513, 1919
Lsp1109I	GCAGC	4 cut(s)	842, 1662, 1689, 1843
LweI	GCATC	5 cut(s)	423, 964, 1646, 1712, 1831
MaeI	CTAG	4 cut(s)	572, 1197, 1286, 1329
MaeII	ACGT	3 cut(s)	206, 241, 677
MaeIII	GTNAC	4 cut(s)	242, 350, 453, 1763
MalI	GATC	8 cut(s)	114, 474, 576, 711, 738, 1239, 1472, 1996
MboI	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	2 cut(s)	472, 574
MhlI	GDGCHC	2 cut(s)	408, 1794
MlsI	TGGCCA	1 cut(s)	695
MluCI	AATT	9 cut(s)	102, 129, 165, 894, 928, 955, 996, 1321, 1739
MluNI	TGGCCA	1 cut(s)	695
MlyI	GAGTC	5 cut(s)	118, 1070, 1306, 1451, 2047
MmeI	TCCRAC	1 cut(s)	691
Mox20I	TGGCCA	1 cut(s)	695
Mph1103I	ATGCAT	2 cut(s)	553, 1023
MroXI	GAANNNNTTC	1 cut(s)	895
MscI	TGGCCA	1 cut(s)	695
MseI	TTAA	8 cut(s)	488, 864, 1106, 1412, 1454, 1494, 1647, 1743
MslI	CAYNNNNRTG	1 cut(s)	1026
Msp20I	TGGCCA	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	2000
MspI	CCGG	2 cut(s)	219, 1175
MspR9I	CCNGG	3 cut(s)	1155, 1428, 1992
MunI	CAATTG	1 cut(s)	102
Mva1269I	GAATGC	3 cut(s)	84, 1023, 1870
MvaI	CCWGG	3 cut(s)	1155, 1428, 1992
MvnI	CGCG	3 cut(s)	211, 643, 1673
MwoI	GCNNNNNNNGC	5 cut(s)	10, 36, 788, 797, 1865
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
NlaIV	GGNNCC	2 cut(s)	48, 336
NruI	TCGCGA	1 cut(s)	211
NsiI	ATGCAT	2 cut(s)	553, 1023
NspI	RCATGY	2 cut(s)	843, 1367
PaeI	GCATGC	1 cut(s)	843
PaeR7I	CTCGAG	1 cut(s)	744
PceI	AGGCCT	1 cut(s)	1111
PciSI	GCTCTTC	1 cut(s)	1799
PctI	GAATGC	3 cut(s)	84, 1023, 1870
PdmI	GAANNNNTTC	1 cut(s)	895
PfeI	GAWTC	5 cut(s)	319, 363, 1480, 1630, 1655
PfoI	TCCNGGA	1 cut(s)	1990
PinAI	ACCGGT	1 cut(s)	1174
PkrI	GCNGC	5 cut(s)	857, 1677, 1704, 1727, 1858
PleI	GAGTC	5 cut(s)	118, 1070, 1305, 1450, 2047
PpsI	GAGTC	5 cut(s)	118, 1070, 1305, 1450, 2047
PsiI	TTATAA	1 cut(s)	1754
Psp1406I	AACGTT	1 cut(s)	241
Psp6I	CCWGG	3 cut(s)	1153, 1426, 1990
PspEI	GGTNACC	1 cut(s)	350
PspGI	CCWGG	3 cut(s)	1153, 1426, 1990
PspN4I	GGNNCC	2 cut(s)	48, 336
PspPI	GGNCC	3 cut(s)	372, 1208, 1988
PspXI	VCTCGAGB	1 cut(s)	744
PstI	CTGCAG	1 cut(s)	1707
PstNI	CAGNNNCTG	2 cut(s)	855, 1616
PsuI	RGATCY	2 cut(s)	472, 574
PvuII	CAGCTG	1 cut(s)	2000
RruI	TCGCGA	1 cut(s)	211
RsaI	GTAC	6 cut(s)	529, 987, 1273, 1335, 1362, 2038
RsaNI	GTAC	6 cut(s)	528, 986, 1272, 1334, 1361, 2037
RseI	CAYNNNNRTG	1 cut(s)	1026
SapI	GCTCTTC	1 cut(s)	1799
SaqAI	TTAA	8 cut(s)	488, 864, 1106, 1412, 1454, 1494, 1647, 1743
SatI	GCNGC	5 cut(s)	856, 1676, 1703, 1726, 1857
Sau3AI	GATC	8 cut(s)	112, 472, 574, 709, 736, 1237, 1470, 1994
Sau96I	GGNCC	3 cut(s)	372, 1208, 1988
ScaI	AGTACT	1 cut(s)	2038
SchI	GAGTC	5 cut(s)	118, 1070, 1306, 1451, 2047
ScrFI	CCNGG	3 cut(s)	1155, 1428, 1992
SduI	GDGCHC	2 cut(s)	408, 1794
SfaNI	GCATC	5 cut(s)	423, 964, 1646, 1712, 1831
SfcI	CTRYAG	2 cut(s)	1131, 1703
Sfr274I	CTCGAG	1 cut(s)	744
SinI	GGWCC	2 cut(s)	1208, 1988
SlaI	CTCGAG	1 cut(s)	744
SmiMI	CAYNNNNRTG	1 cut(s)	1026
SmlI	CTYRAG	3 cut(s)	744, 786, 1460
SmoI	CTYRAG	3 cut(s)	744, 786, 1460
SphI	GCATGC	1 cut(s)	843
Sse9I	AATT	9 cut(s)	102, 129, 165, 894, 928, 955, 996, 1321, 1739
SseBI	AGGCCT	1 cut(s)	1111
SsiI	CCGC	4 cut(s)	508, 643, 1725, 1910
SspMI	CTAG	4 cut(s)	572, 1197, 1286, 1329
StuI	AGGCCT	1 cut(s)	1111
StyD4I	CCNGG	3 cut(s)	1153, 1426, 1990
StyI	CCWWGG	3 cut(s)	89, 696, 1006
TaaI	ACNGT	5 cut(s)	345, 617, 1141, 1360, 1503
TaiI	ACGT	3 cut(s)	209, 244, 680
TaqI	TCGA	5 cut(s)	117, 745, 873, 1420, 2056
TasI	AATT	9 cut(s)	102, 129, 165, 894, 928, 955, 996, 1321, 1739
TatI	WGTACW	2 cut(s)	1360, 2036
TauI	GCSGC	1 cut(s)	1728
TfiI	GAWTC	5 cut(s)	319, 363, 1480, 1630, 1655
Tru1I	TTAA	8 cut(s)	488, 864, 1106, 1412, 1454, 1494, 1647, 1743
Tru9I	TTAA	8 cut(s)	488, 864, 1106, 1412, 1454, 1494, 1647, 1743
TscAI	CASTG	4 cut(s)	348, 1519, 1804, 1929
TseI	GCWGC	4 cut(s)	855, 1675, 1702, 1856
TspGWI	ACGGA	7 cut(s)	15, 318, 356, 1054, 1732, 1980, 2027
TspRI	CASTG	4 cut(s)	348, 1519, 1804, 1929
VpaK11BI	GGWCC	2 cut(s)	1208, 1988
XapI	RAATTY	4 cut(s)	894, 928, 1321, 1739
XbaI	TCTAGA	2 cut(s)	571, 1328
XceI	RCATGY	2 cut(s)	843, 1367
XhoI	CTCGAG	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	895
XspI	CTAG	4 cut(s)	572, 1197, 1286, 1329
ZrmI	AGTACT	1 cut(s)	2038
Zsp2I	ATGCAT	2 cut(s)	553, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.