FvH4_6g11830

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016364
Physical Location & Seq
Reverse (-)
7056930 .. 7059218
2289 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11830.t1

Sequence Viewer

Length: 1368 bp
ATGACTGAGTTGCAACAGGAAATTCAGCAAGTAGAAGCAGTTGACAAGAAGAAAGAGTGGCATCGGGAGATTACTGAGAAGCTTCATCGCAAGGTGGAAAGGGGCTCTGGATTTCTGAGCATTCACACAGTTCCAACGAAACTTCGACGAGTGAAGGATGATGCCTACAACTGTCGCATTGTTTCAATCGGTCCCTTGCATCTAGGGAACCATGATCTTGCAGCCATGAGAGAGCGGAAATGGGCTTACATGCATGACTTATTTCAGCGAATCGAAGATCGTGAGCGGTATCTGGAATGTTGGAAAGAGTGCACGAGTGCTATTTATGATTTAGACTCGGATATCCGTAGATGCTACGCTGAAAGGATGACCCACAAAGAGAAGGGGCACAGGGAGCTAGCAGAAGTTGTGTTACTTGATGGATGCTTCATACTGGAACTTTTCCTCAAGTCTGTGGAACACTTGAATATGACTCTAGATTATCAATCTGATGCAATATTCAATAGTGCTTGGATGATCGCCGCTCTACAACATGATCTAGCATTACTTGAAAACCAGATCCCCTTTTTTAGTCTCGAACGTTTATATGAGACCATTCAGCCTCATCTAAAGAATAGTCGACCAAACTCTGTCGCTAATCTTGCTCTTAATTTCTTCCAACCTATGAACTACAAGGCCTTTTTTGAAGATTGGGGCACGGAGTACAACCATTTGCTTGATGTCTTGCACAAGTTTTACATCCCAAGTAACTGTGATGTCTCGATAGAAATTACAATGATCACCGAAATGAAGCATCACTCTAGACCTGAACCAGTATACGGCAGTACTAAAAAATGGGGATTCAATTTTTGTGCTTCAGAACTTTTGGAGGCTGGAATCGAGTTTCGAAAGCCGCAGAGGACGGACCATTTGTTGAACATAACTTTCAGCAGGGGAGTAATTAAAATCCCCCCGATTTTCATTGACGATTCACTTTTGAGGAACTTGATAGCCTTCGAGCAATGCAGTCTCGGCAGCCTGCATCACATGACATCATACGCTATTCTCTTGAAGAGTCTCATTCGTACCCCGCGGGATATTAAACTACTTAAGCAAAGAGGAATCATAAGTTCCAATTGGATTAGAGACGAAGAGTACTTGTCTCAACTTAAAAGTGTTCTGGATGAAGTTGTTGTGAAGGAGTTCTACTTTGGTGATTTGTGTGACAAAGTGAATGCTTACCATGGCAAGTTCTGGTTTCGCAGAGGTATAAAGTACATCTATCGCACCTATTTCTCCACAGCATGGAGTATGATTTCATTTGTTGCAGCCATTATACTTTTCATTCTCACAGCTACACAAACATTCTTTACAGTCCGCCCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

456

Amino Acids

53.64

Weight (kDa)

7.66

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 41 - 443 8.6e-96 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1284
AccBSI CCGCTC 3 cut(s) 235, 286, 524
AccI GTMKAC 2 cut(s) 619, 816
AccII CGCG 1 cut(s) 1072
AciI CCGC 7 cut(s) 235, 286, 522, 893, 1070, 1072, 1357
AclI AACGTT 1 cut(s) 580
AclWI GGATC 1 cut(s) 553
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 5 cut(s) 704, 826, 1066, 1136, 1256
AfiI CCNNNNNNNGG 2 cut(s) 818, 1284
AflII CTTAAG 1 cut(s) 1088
AgsI TTSAA 8 cut(s) 186, 466, 502, 551, 686, 844, 916, 1051
AluBI AGCT 3 cut(s) 82, 397, 1334
AluI AGCT 3 cut(s) 82, 397, 1334
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 7 cut(s) 578, 584, 763, 1013, 1061, 1119, 1146
Alw44I GTGCAC 1 cut(s) 310
AlwI GGATC 1 cut(s) 553
AoxI GGCC 1 cut(s) 675
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 3 cut(s) 221, 1014, 1307
ApoI RAATTY 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 892, 924
Asp700I GAANNNNTTC 1 cut(s) 1181
AspS9I GGNCC 2 cut(s) 191, 904
AsuHPI GGTGA 2 cut(s) 772, 1205
AsuII TTCGAA 1 cut(s) 886
AsuNHI GCTAGC 1 cut(s) 397
AvaII GGWCC 2 cut(s) 191, 904
BaeGI GKGCMC 3 cut(s) 314, 390, 698
BanII GRGCYC 1 cut(s) 107
BarI GAAGNNNNNNTAC 4 cut(s) 396, 428, 1169, 1201
BauI CACGAG 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 233, 1026, 1319
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 835
BclI TGATCA 1 cut(s) 777
BcoDI GTCTC 7 cut(s) 578, 584, 763, 1013, 1061, 1119, 1146
BfaI CTAG 5 cut(s) 203, 398, 476, 539, 801
BfrI CTTAAG 1 cut(s) 1088
BisI GCNGC 5 cut(s) 222, 522, 893, 1015, 1308
BlsI GCNGC 5 cut(s) 223, 523, 894, 1016, 1309
BmcAI AGTACT 2 cut(s) 826, 1136
Bme18I GGWCC 2 cut(s) 191, 904
BmgT120I GGNCC 2 cut(s) 191, 904
BmiI GGNNCC 2 cut(s) 193, 209
BmsI GCATC 8 cut(s) 70, 151, 208, 341, 413, 481, 802, 1030
BmtI GCTAGC 1 cut(s) 401
Bpu14I TTCGAA 1 cut(s) 886
BpuEI CTTGAG 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 584
BsaJI CCNNGG 2 cut(s) 1070, 1222
Bsc4I CCNNNNNNNGG 2 cut(s) 818, 1284
Bse1I ACTGG 2 cut(s) 438, 812
Bse3DI GCAATG 1 cut(s) 1007
BseDI CCNNGG 2 cut(s) 1070, 1222
BseGI GGATG 6 cut(s) 163, 372, 428, 519, 738, 1168
BseLI CCNNNNNNNGG 2 cut(s) 818, 1284
BseMI GCAATG 1 cut(s) 1007
BseMII CTCAG 2 cut(s) 66, 107
BseNI ACTGG 2 cut(s) 438, 812
BseSI GKGCMC 3 cut(s) 314, 390, 698
BseXI GCAGC 3 cut(s) 233, 1026, 1319
Bsh1236I CGCG 1 cut(s) 1072
BshFI GGCC 1 cut(s) 677
BsiHKAI GWGCWC 1 cut(s) 314
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 2 cut(s) 818, 1284
BsmAI GTCTC 7 cut(s) 578, 584, 763, 1013, 1061, 1119, 1146
BsmBI CGTCTC 1 cut(s) 1119
BsmFI GGGAC 1 cut(s) 177
BsmI GAATGC 2 cut(s) 120, 1219
BsnI GGCC 1 cut(s) 677
Bso31I GGTCTC 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 886
Bsp1286I GDGCHC 4 cut(s) 107, 314, 390, 698
Bsp143I GATC 6 cut(s) 214, 277, 516, 535, 558, 777
Bsp19I CCATGG 1 cut(s) 1222
BspACI CCGC 7 cut(s) 235, 286, 522, 893, 1070, 1072, 1357
BspANI GGCC 1 cut(s) 677
BspCNI CTCAG 2 cut(s) 67, 108
BspFNI CGCG 1 cut(s) 1072
BspLI GGNNCC 2 cut(s) 193, 209
BspOI GCTAGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 553
BspT104I TTCGAA 1 cut(s) 886
BspTI CTTAAG 1 cut(s) 1088
BspTNI GGTCTC 1 cut(s) 584
BsrBI CCGCTC 3 cut(s) 235, 286, 524
BsrDI GCAATG 1 cut(s) 1007
BsrI ACTGG 2 cut(s) 438, 812
BssECI CCNNGG 2 cut(s) 1070, 1222
BssMI GATC 6 cut(s) 214, 277, 516, 535, 558, 777
BssNAI GTATAC 1 cut(s) 817
BssSI CACGAG 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 1222
Bst1107I GTATAC 1 cut(s) 817
Bst2BI CACGAG 1 cut(s) 313
Bst4CI ACNGT 4 cut(s) 130, 173, 752, 1354
Bst6I CTCTTC 2 cut(s) 1046, 1125
BstAFI CTTAAG 1 cut(s) 1088
BstBI TTCGAA 1 cut(s) 886
BstC8I GCNNGC 2 cut(s) 399, 1019
BstDEI CTNAG 3 cut(s) 6, 75, 116
BstDSI CCRYGG 2 cut(s) 1070, 1222
BstF5I GGATG 6 cut(s) 163, 372, 428, 519, 738, 1168
BstFNI CGCG 1 cut(s) 1072
BstKTI GATC 6 cut(s) 217, 280, 519, 538, 561, 780
BstMAI GTCTC 7 cut(s) 578, 584, 763, 1013, 1061, 1119, 1146
BstMBI GATC 6 cut(s) 214, 277, 516, 535, 558, 777
BstMWI GCNNNNNNNGC 3 cut(s) 394, 641, 1011
BstNSI RCATGY 1 cut(s) 253
BstSLI GKGCMC 3 cut(s) 314, 390, 698
BstUI CGCG 1 cut(s) 1072
BstV1I GCAGC 3 cut(s) 233, 1026, 1319
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BstZ17I GTATAC 1 cut(s) 817
BsuRI GGCC 1 cut(s) 677
BtgI CCRYGG 2 cut(s) 1070, 1222
BtgZI GCGATG 1 cut(s) 71
BtsCI GGATG 6 cut(s) 163, 372, 428, 519, 738, 1168
Cac8I GCNNGC 2 cut(s) 399, 1019
Cfr13I GGNCC 2 cut(s) 191, 904
Cfr42I CCGCGG 1 cut(s) 1073
Csp6I GTAC 5 cut(s) 703, 825, 1065, 1135, 1255
CviAII CATG 8 cut(s) 212, 226, 250, 254, 533, 1027, 1223, 1284
CviQI GTAC 5 cut(s) 703, 825, 1065, 1135, 1255
DdeI CTNAG 3 cut(s) 6, 75, 116
DpnI GATC 6 cut(s) 216, 279, 518, 537, 560, 779
DpnII GATC 6 cut(s) 214, 277, 516, 535, 558, 777
Eam1104I CTCTTC 2 cut(s) 1046, 1125
EarI CTCTTC 2 cut(s) 1046, 1125
EciI GGCGGA 1 cut(s) 1346
Eco130I CCWWGG 1 cut(s) 1222
Eco147I AGGCCT 1 cut(s) 677
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 584
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 2 cut(s) 191, 904
Eco57I CTGAAG 1 cut(s) 840
EcoRV GATATC 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 1222
EcoT22I ATGCAT 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 1222
Esp3I CGTCTC 1 cut(s) 1119
FaeI CATG 8 cut(s) 215, 229, 253, 257, 536, 1030, 1226, 1287
FaqI GGGAC 1 cut(s) 177
FatI CATG 8 cut(s) 211, 225, 249, 253, 532, 1026, 1222, 1283
FauI CCCGC 2 cut(s) 1065, 1077
FbaI TGATCA 1 cut(s) 777
FblI GTMKAC 2 cut(s) 619, 816
Fnu4HI GCNGC 5 cut(s) 222, 522, 893, 1015, 1308
FokI GGATG 6 cut(s) 170, 379, 435, 526, 725, 1175
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 5 cut(s) 222, 522, 893, 1015, 1308
FspBI CTAG 5 cut(s) 203, 398, 476, 539, 801
GluI GCNGC 5 cut(s) 222, 522, 893, 1015, 1308
HaeIII GGCC 1 cut(s) 677
Hin1II CATG 8 cut(s) 215, 229, 253, 257, 536, 1030, 1226, 1287
HincII GTYRAC 2 cut(s) 43, 620
HindII GTYRAC 2 cut(s) 43, 620
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 8 cut(s) 270, 335, 472, 840, 876, 968, 1054, 1101
HphI GGTGA 2 cut(s) 772, 1205
Hpy166II GTNNAC 4 cut(s) 43, 312, 620, 817
Hpy188I TCNGA 4 cut(s) 117, 340, 490, 859
Hpy8I GTNNAC 4 cut(s) 43, 312, 620, 817
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 4 cut(s) 148, 376, 1003, 1171
HpyCH4III ACNGT 4 cut(s) 130, 173, 752, 1354
HpyCH4IV ACGT 1 cut(s) 580
HpyF10VI GCNNNNNNNGC 3 cut(s) 394, 641, 1011
HpyF3I CTNAG 3 cut(s) 6, 75, 116
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 8 cut(s) 215, 229, 253, 257, 536, 1030, 1226, 1287
Ksp22I TGATCA 1 cut(s) 777
KspI CCGCGG 1 cut(s) 1073
Kzo9I GATC 6 cut(s) 214, 277, 516, 535, 558, 777
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 3 cut(s) 233, 1026, 1319
LweI GCATC 8 cut(s) 70, 151, 208, 341, 413, 481, 802, 1030
MaeI CTAG 5 cut(s) 203, 398, 476, 539, 801
MaeII ACGT 1 cut(s) 580
MaeIII GTNAC 3 cut(s) 411, 746, 1202
MalI GATC 6 cut(s) 216, 279, 518, 537, 560, 779
MbiI CCGCTC 3 cut(s) 235, 286, 524
MboI GATC 6 cut(s) 214, 277, 516, 535, 558, 777
MboII GAAGA 6 cut(s) 61, 287, 646, 698, 1063, 1142
MfeI CAATTG 1 cut(s) 1114
MflI RGATCY 1 cut(s) 558
MhlI GDGCHC 4 cut(s) 107, 314, 390, 698
MluCI AATT 6 cut(s) 21, 649, 768, 844, 939, 1114
MlyI GAGTC 3 cut(s) 329, 466, 1063
MmeI TCCRAC 3 cut(s) 158, 281, 682
MnlI CCTC 7 cut(s) 455, 612, 862, 891, 972, 1091, 1238
Mph1103I ATGCAT 1 cut(s) 255
MroXI GAANNNNTTC 1 cut(s) 1181
MseI TTAA 5 cut(s) 648, 942, 1080, 1089, 1149
MslI CAYNNNNRTG 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 1072
MspCI CTTAAG 1 cut(s) 1088
MunI CAATTG 1 cut(s) 1114
Mva1269I GAATGC 2 cut(s) 120, 1219
MvnI CGCG 1 cut(s) 1072
MwoI GCNNNNNNNGC 3 cut(s) 394, 641, 1011
NcoI CCATGG 1 cut(s) 1222
NdeII GATC 6 cut(s) 214, 277, 516, 535, 558, 777
NheI GCTAGC 1 cut(s) 397
NlaIII CATG 8 cut(s) 215, 229, 253, 257, 536, 1030, 1226, 1287
NlaIV GGNNCC 2 cut(s) 193, 209
NmeAIII GCCGAG 1 cut(s) 990
NmuCI GTSAC 1 cut(s) 1202
NsiI ATGCAT 1 cut(s) 255
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 886
PceI AGGCCT 1 cut(s) 677
PctI GAATGC 2 cut(s) 120, 1219
PdmI GAANNNNTTC 1 cut(s) 1181
PfeI GAWTC 5 cut(s) 270, 840, 876, 968, 1101
PflMI CCANNNNNTGG 1 cut(s) 1284
PkrI GCNGC 5 cut(s) 223, 523, 894, 1016, 1309
PleI GAGTC 3 cut(s) 329, 466, 1062
PpsI GAGTC 3 cut(s) 329, 466, 1062
Psp1406I AACGTT 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 193, 209
PspPI GGNCC 2 cut(s) 191, 904
PsuI RGATCY 1 cut(s) 558
RsaI GTAC 5 cut(s) 704, 826, 1066, 1136, 1256
RsaNI GTAC 5 cut(s) 703, 825, 1065, 1135, 1255
RseI CAYNNNNRTG 1 cut(s) 785
SacII CCGCGG 1 cut(s) 1073
SalI GTCGAC 1 cut(s) 618
SaqAI TTAA 5 cut(s) 648, 942, 1080, 1089, 1149
SatI GCNGC 5 cut(s) 222, 522, 893, 1015, 1308
Sau3AI GATC 6 cut(s) 214, 277, 516, 535, 558, 777
Sau96I GGNCC 2 cut(s) 191, 904
ScaI AGTACT 2 cut(s) 826, 1136
SchI GAGTC 3 cut(s) 329, 466, 1063
SduI GDGCHC 4 cut(s) 107, 314, 390, 698
SetI ASST 9 cut(s) 84, 96, 399, 583, 664, 808, 1249, 1271, 1336
SfaNI GCATC 8 cut(s) 70, 151, 208, 341, 413, 481, 802, 1030
Sfr303I CCGCGG 1 cut(s) 1073
SfuI TTCGAA 1 cut(s) 886
SgrBI CCGCGG 1 cut(s) 1073
SinI GGWCC 2 cut(s) 191, 904
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 2 cut(s) 446, 1088
SmoI CTYRAG 2 cut(s) 446, 1088
Sse9I AATT 6 cut(s) 21, 649, 768, 844, 939, 1114
SseBI AGGCCT 1 cut(s) 677
SsiI CCGC 7 cut(s) 235, 286, 522, 893, 1070, 1072, 1357
SspI AATATT 1 cut(s) 498
SspMI CTAG 5 cut(s) 203, 398, 476, 539, 801
StuI AGGCCT 1 cut(s) 677
StyI CCWWGG 1 cut(s) 1222
TaaI ACNGT 4 cut(s) 130, 173, 752, 1354
TaiI ACGT 1 cut(s) 583
TaqI TCGA 8 cut(s) 145, 273, 576, 619, 761, 879, 886, 996
TaqII GACCGA 1 cut(s) 179
TasI AATT 6 cut(s) 21, 649, 768, 844, 939, 1114
TatI WGTACW 4 cut(s) 702, 824, 1134, 1254
TauI GCSGC 2 cut(s) 524, 895
TfiI GAWTC 5 cut(s) 270, 840, 876, 968, 1101
Tru1I TTAA 5 cut(s) 648, 942, 1080, 1089, 1149
Tru9I TTAA 5 cut(s) 648, 942, 1080, 1089, 1149
TseFI GTSAC 1 cut(s) 1202
TseI GCWGC 3 cut(s) 221, 1014, 1307
Tsp45I GTSAC 1 cut(s) 1202
TspDTI ATGAA 8 cut(s) 74, 418, 680, 803, 949, 1179, 1287, 1312
TspGWI ACGGA 3 cut(s) 335, 713, 917
Van91I CCANNNNNTGG 1 cut(s) 1284
Vha464I CTTAAG 1 cut(s) 1088
VneI GTGCAC 1 cut(s) 310
VpaK11BI GGWCC 2 cut(s) 191, 904
XapI RAATTY 1 cut(s) 21
XbaI TCTAGA 2 cut(s) 475, 800
XceI RCATGY 1 cut(s) 253
XmiI GTMKAC 2 cut(s) 619, 816
XmnI GAANNNNTTC 1 cut(s) 1181
XspI CTAG 5 cut(s) 203, 398, 476, 539, 801
ZrmI AGTACT 2 cut(s) 826, 1136
Zsp2I ATGCAT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.