Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039690.1

Orthogroup ID

OG0016364

Physical Location & Seq

Genomic Coordinates Forward (+)

1451 .. 3285

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039690.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

atgattgaattccagcaggaaatccagcaagtagaagaaattgacaagaagaaagagtggcatcgggagattactgaaaagcttcaccgcaaggtggaaactggttctggatgtctgagcatccacacggttccaacgagacttcgacgagtgaaggatgaggcctacaactgtcgcattgtctcaattggtcctttgcatctaggcaaccatgaccttgcagccatgagagagcgtaaatgggcttacatgcatcacttatttcagagaattgaagatcgtcagcagtttctagagtgttggaaagagtgcacgagtgctgtttatgatttagactcacaaattcgtggatgctacgctaaaaggatgagccacaaagacaagggacacaaggagcttgcagaagttgtattaattgacggatgcttcattctggaacttttcctcaggtatgaggaacacttgaatatgacactggattatcaatctgatccaatattcaatagtgcctggatgatcgcggctcttcagcatgatctagcactactcgaaaaccagatcccctttatgattctcgaacgtgtatatgagaccattaagcctcatctaaagaatagtcgaccaaactctgtcgctagccttgctcttacattttttcaacccatgaactataaggcctttttagaagattgggacacgcagtacaaccatttgcttgatgtcttgcacaaattttacctcccaagtaattgtgacatctcagtagaaattgaaatgattaccgaaatgaaacatcattccagacctgaaccagtattcggcagtactaaaaaatggggattcaatttttgtgcttcagagctttcggcggctggaatcgagtttcagaagcagcagaggacggaccatttgttgaacataactttcagcaggggagtaattaaaattccaccgattttcattgacgattcactcttgaggaacttgattgctttcgagcaatgcagtcttggcagcctgcatcacatgacatcatacgcaattctcttgaagagtctcattcgttccccgcgagatatcagactacttaagcaaagagggatcataagttccgattggattagagaagaagagtacttgtctcaactcaaaagtatacttgatgaagttgttgtgaaggagttctactttggtgatttgtgtgacaaagtgaatgcttaccacggcaagttctggtttcgcagaggtataaagtacatttatcgcacttatttctccacagcatggagtatgatatcatttgttgcagccattatacttttcattctcacagctttacaaacattctatactgtccgccctcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

455

Amino Acids

53.66

Weight (kDa)

7.31

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016364)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11830
prunus_persica	Prupe.2G285000_v2.0.a1 Prupe.6G274300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463541
rosa_laevigata	RLG00000024772
rosa_multiflora	Rmu_sc0000923.1_g000024 Rmu_sc0010184.1_g000008 Rmu_sc0039690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416470
rosa_rugosa	Rorug03G0065800
rosa_samantha	Rh3AG122800 Rh3BG127900 Rh3CG129400 Rh3DG128300
rosa_wichuraiana	Rw0G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1284
AccI	GTMKAC	2 cut(s)	619, 1156
AccII	CGCG	2 cut(s)	521, 1072
AciI	CCGC	5 cut(s)	88, 521, 869, 1070, 1357
AclWI	GGATC	3 cut(s)	485, 553, 1109
AcsI	RAATTY	4 cut(s)	8, 342, 731, 945
AcuI	CTGAAG	2 cut(s)	512, 840
AfaI	GTAC	4 cut(s)	704, 826, 1136, 1256
AfiI	CCNNNNNNNGG	3 cut(s)	94, 818, 1284
AflII	CTTAAG	1 cut(s)	1088
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	9 cut(s)	8, 275, 466, 502, 659, 773, 844, 916, 1051
AjnI	CCWGG	1 cut(s)	509
AloI	GAACNNNNNNTCC	2 cut(s)	1093, 1125
AluBI	AGCT	4 cut(s)	82, 397, 862, 1334
AluI	AGCT	4 cut(s)	82, 397, 862, 1334
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	5 cut(s)	133, 187, 584, 1061, 1146
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	3 cut(s)	485, 553, 1109
AoxI	GGCC	2 cut(s)	162, 675
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	4 cut(s)	221, 892, 1014, 1307
ApoI	RAATTY	4 cut(s)	8, 342, 731, 945
ArsI	GACNNNNNNTTYG	2 cut(s)	892, 924
AseI	ATTAAT	1 cut(s)	413
Asp700I	GAANNNNTTC	2 cut(s)	81, 1181
AspS9I	GGNCC	2 cut(s)	191, 904
AsuHPI	GGTGA	2 cut(s)	77, 1205
AsuNHI	GCTAGC	1 cut(s)	635
AvaII	GGWCC	2 cut(s)	191, 904
AxyI	CCTNAGG	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	1169, 1201
BauI	CACGAG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	233, 904, 1026, 1319
BceAI	ACGGC	1 cut(s)	1240
BciT130I	CCWGG	1 cut(s)	511
BcoDI	GTCTC	5 cut(s)	133, 187, 584, 1061, 1146
BfaI	CTAG	4 cut(s)	203, 293, 539, 636
BfrI	CTTAAG	1 cut(s)	1088
BisI	GCNGC	6 cut(s)	222, 522, 870, 893, 1015, 1308
BlsI	GCNGC	6 cut(s)	223, 523, 871, 894, 1016, 1309
BmcAI	AGTACT	2 cut(s)	826, 1136
Bme1390I	CCNGG	1 cut(s)	511
Bme18I	GGWCC	2 cut(s)	191, 904
BmgT120I	GGNCC	2 cut(s)	191, 904
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	7 cut(s)	70, 129, 208, 262, 341, 413, 1030
BmtI	GCTAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	997
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	1222
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 818, 1284
Bse1I	ACTGG	3 cut(s)	106, 480, 812
Bse21I	CCTNAGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	1007
BseBI	CCWGG	1 cut(s)	511
BseDI	CCNNGG	1 cut(s)	1222
BseGI	GGATG	7 cut(s)	116, 120, 163, 356, 372, 428, 519
BseLI	CCNNNNNNNGG	3 cut(s)	94, 818, 1284
BseMI	GCAATG	1 cut(s)	1007
BseMII	CTCAG	3 cut(s)	107, 460, 774
BseNI	ACTGG	3 cut(s)	106, 480, 812
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	233, 904, 1026, 1319
Bsh1236I	CGCG	2 cut(s)	521, 1072
BshFI	GGCC	2 cut(s)	164, 677
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	2 cut(s)	399, 707
BslI	CCNNNNNNNGG	3 cut(s)	94, 818, 1284
BsmAI	GTCTC	5 cut(s)	133, 187, 584, 1061, 1146
BsmFI	GGGAC	2 cut(s)	399, 707
BsmI	GAATGC	1 cut(s)	1219
BsnI	GGCC	2 cut(s)	164, 677
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
BspACI	CCGC	5 cut(s)	88, 521, 869, 1070, 1357
BspANI	GGCC	2 cut(s)	164, 677
BspCNI	CTCAG	3 cut(s)	108, 459, 773
BspFNI	CGCG	2 cut(s)	521, 1072
BspLI	GGNNCC	1 cut(s)	132
BspOI	GCTAGC	1 cut(s)	639
BspPI	GGATC	3 cut(s)	485, 553, 1109
BspQI	GCTCTTC	1 cut(s)	531
BspTI	CTTAAG	1 cut(s)	1088
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	1007
BsrI	ACTGG	3 cut(s)	106, 480, 812
BssECI	CCNNGG	1 cut(s)	1222
BssMI	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
BssNAI	GTATAC	1 cut(s)	1157
BssSI	CACGAG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	1157
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	3 cut(s)	130, 173, 1354
Bst6I	CTCTTC	3 cut(s)	531, 1046, 1125
BstAFI	CTTAAG	1 cut(s)	1088
BstC8I	GCNNGC	3 cut(s)	399, 637, 1019
BstDEI	CTNAG	3 cut(s)	116, 446, 760
BstDSI	CCRYGG	1 cut(s)	1222
BstF5I	GGATG	7 cut(s)	116, 120, 163, 356, 372, 428, 519
BstFNI	CGCG	2 cut(s)	521, 1072
BstKTI	GATC	6 cut(s)	280, 493, 519, 538, 561, 1104
BstMAI	GTCTC	5 cut(s)	133, 187, 584, 1061, 1146
BstMBI	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 1011
BstNI	CCWGG	1 cut(s)	511
BstNSI	RCATGY	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	509
BstSLI	GKGCMC	1 cut(s)	314
BstUI	CGCG	2 cut(s)	521, 1072
BstV1I	GCAGC	4 cut(s)	233, 904, 1026, 1319
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
BstZ17I	GTATAC	1 cut(s)	1157
Bsu36I	CCTNAGG	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	164, 677
BtgI	CCRYGG	1 cut(s)	1222
BtsCI	GGATG	7 cut(s)	116, 120, 163, 356, 372, 428, 519
BtsIMutI	CAGTG	1 cut(s)	473
Cac8I	GCNNGC	3 cut(s)	399, 637, 1019
Cfr13I	GGNCC	2 cut(s)	191, 904
Csp6I	GTAC	4 cut(s)	703, 825, 1135, 1255
CviAII	CATG	7 cut(s)	212, 226, 250, 533, 664, 1027, 1284
CviQI	GTAC	4 cut(s)	703, 825, 1135, 1255
DdeI	CTNAG	3 cut(s)	116, 446, 760
DpnI	GATC	6 cut(s)	279, 492, 518, 537, 560, 1103
DpnII	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
Eam1104I	CTCTTC	3 cut(s)	531, 1046, 1125
EarI	CTCTTC	3 cut(s)	531, 1046, 1125
EciI	GGCGGA	1 cut(s)	1346
Eco147I	AGGCCT	2 cut(s)	164, 677
Eco31I	GGTCTC	1 cut(s)	584
Eco32I	GATATC	2 cut(s)	1078, 1296
Eco47I	GGWCC	2 cut(s)	191, 904
Eco57I	CTGAAG	2 cut(s)	512, 840
Eco81I	CCTNAGG	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	509
EcoRV	GATATC	2 cut(s)	1078, 1296
EcoT22I	ATGCAT	1 cut(s)	255
FaeI	CATG	7 cut(s)	215, 229, 253, 536, 667, 1030, 1287
FaqI	GGGAC	2 cut(s)	399, 707
FatI	CATG	7 cut(s)	211, 225, 249, 532, 663, 1026, 1283
FauI	CCCGC	1 cut(s)	1077
FblI	GTMKAC	2 cut(s)	619, 1156
Fnu4HI	GCNGC	6 cut(s)	222, 522, 870, 893, 1015, 1308
FokI	GGATG	7 cut(s)	107, 123, 170, 363, 379, 435, 526
Fsp4HI	GCNGC	6 cut(s)	222, 522, 870, 893, 1015, 1308
FspBI	CTAG	4 cut(s)	203, 293, 539, 636
GluI	GCNGC	6 cut(s)	222, 522, 870, 893, 1015, 1308
HaeIII	GGCC	2 cut(s)	164, 677
Hin1II	CATG	7 cut(s)	215, 229, 253, 536, 667, 1030, 1287
HincII	GTYRAC	1 cut(s)	620
HindII	GTYRAC	1 cut(s)	620
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	6 cut(s)	335, 571, 840, 876, 968, 1054
HphI	GGTGA	2 cut(s)	77, 1205
Hpy166II	GTNNAC	3 cut(s)	312, 620, 1157
Hpy188I	TCNGA	7 cut(s)	117, 267, 490, 859, 888, 1082, 1114
Hpy188III	TCNNGA	8 cut(s)	65, 108, 293, 434, 575, 801, 976, 1048
Hpy8I	GTNNAC	3 cut(s)	312, 620, 1157
Hpy99I	CGWCG	1 cut(s)	150
HpyAV	CCTTC	2 cut(s)	148, 1171
HpyCH4III	ACNGT	3 cut(s)	130, 173, 1354
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	9 cut(s)	199, 221, 253, 312, 401, 727, 1005, 1021, 1307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 1011
HpyF3I	CTNAG	3 cut(s)	116, 446, 760
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	7 cut(s)	215, 229, 253, 536, 667, 1030, 1287
Kzo9I	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	394
Lsp1109I	GCAGC	4 cut(s)	233, 904, 1026, 1319
LweI	GCATC	7 cut(s)	70, 129, 208, 262, 341, 413, 1030
MaeI	CTAG	4 cut(s)	203, 293, 539, 636
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	2 cut(s)	752, 1202
MalI	GATC	6 cut(s)	279, 492, 518, 537, 560, 1103
MboI	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
MboII	GAAGA	8 cut(s)	47, 61, 287, 518, 698, 1063, 1139, 1142
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	558
MhlI	GDGCHC	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	329, 1063
MmeI	TCCRAC	2 cut(s)	158, 281
MnlI	CCTC	9 cut(s)	154, 448, 455, 612, 749, 891, 972, 1091, 1238
Mph1103I	ATGCAT	1 cut(s)	255
MroXI	GAANNNNTTC	2 cut(s)	81, 1181
MseI	TTAA	4 cut(s)	413, 597, 942, 1089
MspCI	CTTAAG	1 cut(s)	1088
MspR9I	CCNGG	1 cut(s)	511
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	1219
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	2 cut(s)	521, 1072
MwoI	GCNNNNNNNGC	2 cut(s)	641, 1011
NdeII	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
NheI	GCTAGC	1 cut(s)	635
NlaIII	CATG	7 cut(s)	215, 229, 253, 536, 667, 1030, 1287
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	752, 1202
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	1 cut(s)	253
PceI	AGGCCT	2 cut(s)	164, 677
PciSI	GCTCTTC	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	2 cut(s)	134, 1069
PctI	GAATGC	1 cut(s)	1219
PdmI	GAANNNNTTC	2 cut(s)	81, 1181
PfeI	GAWTC	4 cut(s)	571, 840, 876, 968
PflMI	CCANNNNNTGG	1 cut(s)	1284
PkrI	GCNGC	6 cut(s)	223, 523, 871, 894, 1016, 1309
PleI	GAGTC	2 cut(s)	329, 1062
PpsI	GAGTC	2 cut(s)	329, 1062
PshBI	ATTAAT	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	191, 904
PsuI	RGATCY	1 cut(s)	558
RsaI	GTAC	4 cut(s)	704, 826, 1136, 1256
RsaNI	GTAC	4 cut(s)	703, 825, 1135, 1255
SalI	GTCGAC	1 cut(s)	618
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	4 cut(s)	413, 597, 942, 1089
SatI	GCNGC	6 cut(s)	222, 522, 870, 893, 1015, 1308
Sau3AI	GATC	6 cut(s)	277, 490, 516, 535, 558, 1101
Sau96I	GGNCC	2 cut(s)	191, 904
ScaI	AGTACT	2 cut(s)	826, 1136
SchI	GAGTC	2 cut(s)	329, 1063
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	7 cut(s)	70, 129, 208, 262, 341, 413, 1030
SinI	GGWCC	2 cut(s)	191, 904
SmlI	CTYRAG	2 cut(s)	976, 1088
SmoI	CTYRAG	2 cut(s)	976, 1088
SseBI	AGGCCT	2 cut(s)	164, 677
SsiI	CCGC	5 cut(s)	88, 521, 869, 1070, 1357
SspI	AATATT	1 cut(s)	498
SspMI	CTAG	4 cut(s)	203, 293, 539, 636
StuI	AGGCCT	2 cut(s)	164, 677
StyD4I	CCNGG	1 cut(s)	509
TaaI	ACNGT	3 cut(s)	130, 173, 1354
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	6 cut(s)	145, 549, 576, 619, 879, 996
TatI	WGTACW	4 cut(s)	702, 824, 1134, 1254
TauI	GCSGC	2 cut(s)	524, 872
TfiI	GAWTC	4 cut(s)	571, 840, 876, 968
Tru1I	TTAA	4 cut(s)	413, 597, 942, 1089
Tru9I	TTAA	4 cut(s)	413, 597, 942, 1089
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	2 cut(s)	752, 1202
TseI	GCWGC	4 cut(s)	221, 892, 1014, 1307
Tsp45I	GTSAC	2 cut(s)	752, 1202
TspDTI	ATGAA	6 cut(s)	418, 680, 803, 949, 1179, 1312
TspGWI	ACGGA	2 cut(s)	435, 917
TspRI	CASTG	1 cut(s)	480
Van91I	CCANNNNNTGG	1 cut(s)	1284
Vha464I	CTTAAG	1 cut(s)	1088
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	191, 904
VspI	ATTAAT	1 cut(s)	413
XapI	RAATTY	4 cut(s)	8, 342, 731, 945
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	253
XmiI	GTMKAC	2 cut(s)	619, 1156
XmnI	GAANNNNTTC	2 cut(s)	81, 1181
XspI	CTAG	4 cut(s)	203, 293, 539, 636
ZrmI	AGTACT	2 cut(s)	826, 1136
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.