Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010184.1

Orthogroup ID

OG0016364

Physical Location & Seq

Genomic Coordinates Forward (+)

36936 .. 38213

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010184.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

atgagcatctataaagttccaacaaggcttcgaagagtcaaagatgaagcctacaactcccgtgtcgtctcgattggacctttccaactggagaaccctgaccttgcagctatgagcgagcataaatggcattacctgcaattctttcttaagcgagtagaagatgataagcagtctctcctgctgaaacagttcacaacttctatttacaatttagatgcagacgttcgtcgatgctactccgaaaagttcaaccacatctctaagaatgtgcttgcagaaatcatgttgcttgatggttgcttcattttggaacttctcctcaggtatgatcagtacttaaaagagaagttggaagaccaatctgatgtaatatttaatagtgcttggatgatcccagcttttcagcatgatcttgcattacttgaaaaccaaatcccctttttcattctcgaacttttgtatgatgatatcaagagtcatctcaaaggtgacccaccagaccctgtcaccactttagctcttaacttctttcagaacccgtcatcagaacatacacttgattccacccgtcaccagtacaagcattttcttgatctcttgcacaaattttacctccccagtgggaacgctttttcagtaaaatatccactgcatcaagtctctattgacttgattccaaaagcatggggattcaatttcagtgctacaaaactactggaggctgggattgagttcgaaagtgggtccactgatgaccctttgttgaagataactttcacagatggtgtaatcagaattccacccgcgaccattcaactaacatcggattcactcttcaggaacctgattgcgttcgagcaatgcagccttagcagtacgcatcacattacatcatatatgatcctgatgaatagtctcgtctgttctacagaggatataaagctacttcggagaagaggaatcataaaattagtggaccacaatagcgtttccgaccaacaatacttcgctcaattcaaaactattttggaaagagttgtcgtgaaggacttctgctttggggaattgtgtgagcaagtgaacaagtaccggaaatcgtggttgcgttggaggaagcataagacagctataagggtgcgatttaagagacatatgaagttcctttatggaacttatttctccagtccatggagtatcatatcattccttggtgcgcttgtcctttttgttctcacagctacacagacatactatagcattcaccctgctcgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

425

Amino Acids

49.64

Weight (kDa)

8.54

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016364)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11830
prunus_persica	Prupe.2G285000_v2.0.a1 Prupe.6G274300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463541
rosa_laevigata	RLG00000024772
rosa_multiflora	Rmu_sc0000923.1_g000024 Rmu_sc0010184.1_g000008 Rmu_sc0039690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416470
rosa_rugosa	Rorug03G0065800
rosa_samantha	Rh3AG122800 Rh3BG127900 Rh3CG129400 Rh3DG128300
rosa_wichuraiana	Rw0G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	144
AccB7I	CCANNNNNTGG	1 cut(s)	1191
AccII	CGCG	1 cut(s)	809
AciI	CCGC	1 cut(s)	807
AclWI	GGATC	2 cut(s)	388, 898
AcsI	RAATTY	2 cut(s)	608, 798
AcuI	CTGAAG	1 cut(s)	823
AfaI	GTAC	4 cut(s)	338, 581, 880, 1091
AfiI	CCNNNNNNNGG	1 cut(s)	1191
AflII	CTTAAG	1 cut(s)	149
AgsI	TTSAA	6 cut(s)	253, 428, 697, 769, 818, 1021
AluBI	AGCT	6 cut(s)	110, 401, 521, 946, 1130, 1241
AluI	AGCT	6 cut(s)	110, 401, 521, 946, 1130, 1241
Alw26I	GTCTC	5 cut(s)	73, 180, 667, 923, 1144
AlwI	GGATC	2 cut(s)	388, 898
AlwNI	CAGNNNCTG	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	107, 867
ApoI	RAATTY	2 cut(s)	608, 798
ArsI	GACNNNNNNTTYG	2 cut(s)	1043, 1075
Asp700I	GAANNNNTTC	2 cut(s)	191, 1052
AspLEI	GCGC	1 cut(s)	1219
AspS9I	GGNCC	3 cut(s)	77, 747, 979
AsuHPI	GGTGA	4 cut(s)	502, 503, 566, 1256
AsuII	TTCGAA	2 cut(s)	31, 738
AvaII	GGWCC	3 cut(s)	77, 747, 979
AxyI	CCTNAGG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	119, 879
BccI	CCATC	2 cut(s)	290, 779
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	5 cut(s)	73, 180, 667, 923, 1144
BfaI	CTAG	1 cut(s)	1276
BfmI	CTRYAG	2 cut(s)	930, 1255
BfrI	CTTAAG	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	144
BisI	GCNGC	2 cut(s)	108, 868
BlsI	GCNGC	2 cut(s)	109, 869
BmcAI	AGTACT	1 cut(s)	338
Bme18I	GGWCC	3 cut(s)	77, 747, 979
BmgT120I	GGNCC	3 cut(s)	77, 747, 979
BmiI	GGNNCC	2 cut(s)	748, 845
BmrI	ACTGGG	1 cut(s)	615
BmsI	GCATC	5 cut(s)	15, 208, 224, 664, 892
BmuI	ACTGGG	1 cut(s)	615
BoxI	GACNNNNGTC	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	363
BpmI	CTGGAG	3 cut(s)	110, 740, 1168
Bpu10I	CCTNAGC	1 cut(s)	872
Bpu14I	TTCGAA	2 cut(s)	31, 738
BsaJI	CCNNGG	2 cut(s)	1190, 1210
BsaWI	WCCGGW	1 cut(s)	1092
Bsc4I	CCNNNNNNNGG	1 cut(s)	1191
Bse1I	ACTGG	5 cut(s)	93, 577, 621, 723, 1185
Bse21I	CCTNAGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	869
BseDI	CCNNGG	2 cut(s)	1190, 1210
BseGI	GGATG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	1191
BseMI	GCAATG	1 cut(s)	869
BseMII	CTCAG	1 cut(s)	337
BseNI	ACTGG	5 cut(s)	93, 577, 621, 723, 1185
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	119, 879
BseYI	CCCAGC	2 cut(s)	397, 725
Bsh1236I	CGCG	1 cut(s)	809
BsiSI	CCGG	1 cut(s)	1093
BslI	CCNNNNNNNGG	1 cut(s)	1191
BsmAI	GTCTC	5 cut(s)	73, 180, 667, 923, 1144
BsmBI	CGTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	1260
Bsp119I	TTCGAA	2 cut(s)	31, 738
Bsp143I	GATC	5 cut(s)	331, 393, 412, 595, 903
Bsp19I	CCATGG	1 cut(s)	1190
BspACI	CCGC	1 cut(s)	807
BspCNI	CTCAG	1 cut(s)	336
BspFNI	CGCG	1 cut(s)	809
BspLI	GGNNCC	2 cut(s)	748, 845
BspMI	ACCTGC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	388, 898
BspT104I	TTCGAA	2 cut(s)	31, 738
BspTI	CTTAAG	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	869
BsrI	ACTGG	5 cut(s)	93, 577, 621, 723, 1185
BssECI	CCNNGG	2 cut(s)	1190, 1210
BssMI	GATC	5 cut(s)	331, 393, 412, 595, 903
BssT1I	CCWWGG	2 cut(s)	1190, 1210
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	3 cut(s)	28, 842, 952
BstAFI	CTTAAG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	136
BstBI	TTCGAA	2 cut(s)	31, 738
BstC8I	GCNNGC	3 cut(s)	119, 276, 1273
BstDEI	CTNAG	3 cut(s)	264, 323, 872
BstDSI	CCRYGG	1 cut(s)	1190
BstEII	GGTNACC	1 cut(s)	491
BstF5I	GGATG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	809
BstHHI	GCGC	1 cut(s)	1219
BstKTI	GATC	5 cut(s)	334, 396, 415, 598, 906
BstMAI	GTCTC	5 cut(s)	73, 180, 667, 923, 1144
BstMBI	GATC	5 cut(s)	331, 393, 412, 595, 903
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 136, 873
BstPAI	GACNNNNGTC	1 cut(s)	228
BstPI	GGTNACC	1 cut(s)	491
BstSFI	CTRYAG	2 cut(s)	930, 1255
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	2 cut(s)	119, 879
BstV2I	GAAGAC	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	687
Bsu36I	CCTNAGG	1 cut(s)	323
BtgI	CCRYGG	1 cut(s)	1190
BtsCI	GGATG	1 cut(s)	396
BtsI	GCAGTG	1 cut(s)	650
BtsIMutI	CAGTG	4 cut(s)	628, 650, 709, 750
BveI	ACCTGC	1 cut(s)	144
Cac8I	GCNNGC	3 cut(s)	119, 276, 1273
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	1219
Cfr13I	GGNCC	3 cut(s)	77, 747, 979
Csp6I	GTAC	4 cut(s)	337, 580, 879, 1090
CviAII	CATG	4 cut(s)	286, 410, 687, 1191
CviQI	GTAC	4 cut(s)	337, 580, 879, 1090
DdeI	CTNAG	3 cut(s)	264, 323, 872
DpnI	GATC	5 cut(s)	333, 395, 414, 597, 905
DpnII	GATC	5 cut(s)	331, 393, 412, 595, 903
Eam1104I	CTCTTC	3 cut(s)	28, 842, 952
EarI	CTCTTC	3 cut(s)	28, 842, 952
Eco130I	CCWWGG	2 cut(s)	1190, 1210
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	3 cut(s)	77, 747, 979
Eco57I	CTGAAG	1 cut(s)	823
Eco81I	CCTNAGG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	491
EcoO65I	GGTNACC	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	798
EcoRV	GATATC	1 cut(s)	472
EcoT14I	CCWWGG	2 cut(s)	1190, 1210
ErhI	CCWWGG	2 cut(s)	1190, 1210
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	4 cut(s)	289, 413, 690, 1194
FatI	CATG	4 cut(s)	285, 409, 686, 1190
FauI	CCCGC	1 cut(s)	814
FauNDI	CATATG	1 cut(s)	1155
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	108, 868
FokI	GGATG	1 cut(s)	403
Fsp4HI	GCNGC	2 cut(s)	108, 868
FspBI	CTAG	1 cut(s)	1276
GlaI	GCGC	1 cut(s)	1218
GluI	GCNGC	2 cut(s)	108, 868
GsaI	CCCAGC	2 cut(s)	401, 729
GsuI	CTGGAG	3 cut(s)	110, 740, 1168
HapII	CCGG	1 cut(s)	1093
HhaI	GCGC	1 cut(s)	1219
Hin1II	CATG	4 cut(s)	289, 413, 690, 1194
Hin6I	GCGC	1 cut(s)	1217
HinP1I	GCGC	1 cut(s)	1217
HinfI	GANTC	7 cut(s)	36, 478, 563, 676, 693, 830, 963
HpaII	CCGG	1 cut(s)	1093
HphI	GGTGA	4 cut(s)	502, 503, 566, 1256
Hpy166II	GTNNAC	4 cut(s)	195, 750, 979, 1084
Hpy188I	TCNGA	8 cut(s)	244, 367, 537, 550, 797, 829, 954, 997
Hpy188III	TCNNGA	7 cut(s)	70, 452, 475, 593, 841, 907, 1045
Hpy8I	GTNNAC	4 cut(s)	195, 750, 979, 1084
Hpy99I	CGWCG	1 cut(s)	234
HpyAV	CCTTC	1 cut(s)	1042
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	8 cut(s)	107, 139, 221, 278, 419, 604, 655, 867
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 136, 873
HpyF3I	CTNAG	3 cut(s)	264, 323, 872
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	289, 413, 690, 1194
HspAI	GCGC	1 cut(s)	1217
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	331, 393, 412, 595, 903
Lsp1109I	GCAGC	2 cut(s)	119, 879
LweI	GCATC	5 cut(s)	15, 208, 224, 664, 892
MaeI	CTAG	1 cut(s)	1276
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	491, 508, 572
MalI	GATC	5 cut(s)	333, 395, 414, 597, 905
MboI	GATC	5 cut(s)	331, 393, 412, 595, 903
MboII	GAAGA	6 cut(s)	45, 173, 368, 781, 829, 969
MluCI	AATT	8 cut(s)	140, 211, 608, 697, 798, 971, 1016, 1067
MlyI	GAGTC	2 cut(s)	45, 487
MmeI	TCCRAC	5 cut(s)	44, 109, 333, 1020, 1091
MnlI	CCTC	6 cut(s)	332, 626, 715, 928, 953, 1107
MroXI	GAANNNNTTC	2 cut(s)	191, 1052
MseI	TTAA	5 cut(s)	150, 341, 378, 525, 1146
MspCI	CTTAAG	1 cut(s)	149
MspI	CCGG	1 cut(s)	1093
Mva1269I	GAATGC	1 cut(s)	1260
MvnI	CGCG	1 cut(s)	809
MwoI	GCNNNNNNNGC	3 cut(s)	127, 136, 873
NcoI	CCATGG	1 cut(s)	1190
NdeI	CATATG	1 cut(s)	1155
NdeII	GATC	5 cut(s)	331, 393, 412, 595, 903
NlaIII	CATG	4 cut(s)	289, 413, 690, 1194
NlaIV	GGNNCC	2 cut(s)	748, 845
NmuCI	GTSAC	3 cut(s)	491, 508, 572
NspV	TTCGAA	2 cut(s)	31, 738
PctI	GAATGC	1 cut(s)	1260
PdmI	GAANNNNTTC	2 cut(s)	191, 1052
PfeI	GAWTC	5 cut(s)	563, 676, 693, 830, 963
PflFI	GACNNNGTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	1191
PkrI	GCNGC	2 cut(s)	109, 869
PleI	GAGTC	2 cut(s)	44, 486
PpsI	GAGTC	2 cut(s)	44, 486
PshAI	GACNNNNGTC	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	491
PspFI	CCCAGC	2 cut(s)	397, 725
PspN4I	GGNNCC	2 cut(s)	748, 845
PspPI	GGNCC	3 cut(s)	77, 747, 979
PstNI	CAGNNNCTG	1 cut(s)	506
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	4 cut(s)	338, 581, 880, 1091
RsaNI	GTAC	4 cut(s)	337, 580, 879, 1090
SaqAI	TTAA	5 cut(s)	150, 341, 378, 525, 1146
SatI	GCNGC	2 cut(s)	108, 868
Sau3AI	GATC	5 cut(s)	331, 393, 412, 595, 903
Sau96I	GGNCC	3 cut(s)	77, 747, 979
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	2 cut(s)	45, 487
SfaNI	GCATC	5 cut(s)	15, 208, 224, 664, 892
SfcI	CTRYAG	2 cut(s)	930, 1255
SfuI	TTCGAA	2 cut(s)	31, 738
SinI	GGWCC	3 cut(s)	77, 747, 979
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	8 cut(s)	140, 211, 608, 697, 798, 971, 1016, 1067
SsiI	CCGC	1 cut(s)	807
SspI	AATATT	1 cut(s)	375
SspMI	CTAG	1 cut(s)	1276
StyI	CCWWGG	2 cut(s)	1190, 1210
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	6 cut(s)	31, 71, 232, 453, 738, 858
TasI	AATT	8 cut(s)	140, 211, 608, 697, 798, 971, 1016, 1067
TatI	WGTACW	2 cut(s)	336, 579
TfiI	GAWTC	5 cut(s)	563, 676, 693, 830, 963
Tru1I	TTAA	5 cut(s)	150, 341, 378, 525, 1146
Tru9I	TTAA	5 cut(s)	150, 341, 378, 525, 1146
TscAI	CASTG	4 cut(s)	628, 657, 709, 757
TseFI	GTSAC	3 cut(s)	491, 508, 572
TseI	GCWGC	2 cut(s)	107, 867
Tsp45I	GTSAC	3 cut(s)	491, 508, 572
TspDTI	ATGAA	5 cut(s)	60, 295, 436, 926, 1172
TspRI	CASTG	4 cut(s)	628, 657, 709, 757
Tth111I	GACNNNGTC	1 cut(s)	506
Van91I	CCANNNNNTGG	1 cut(s)	1191
Vha464I	CTTAAG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	77, 747, 979
XapI	RAATTY	2 cut(s)	608, 798
XmnI	GAANNNNTTC	2 cut(s)	191, 1052
XspI	CTAG	1 cut(s)	1276
ZrmI	AGTACT	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.