Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000923.1

Orthogroup ID

OG0016364

Physical Location & Seq

Genomic Coordinates Reverse (-)

97302 .. 100230

Gene Structure 2929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000923.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

atgagaaagcaaagcattcacgaaatagtttgttacacagatgaccattcttttcctcttccactggtggcggttcagaattggtcaaatgtatctaataaattttgtataggtacagatcagaagtggagccagaatacaactaatttggagtcgcttgttccagggtgttcctattctcatatatccatcttcatagttggctacaaatcaaagccgatatgcagtgattggggaaaaagctcaaattggtggtccgacgacaaaggaaaacctgccaagatgactgaattccagcaggaaatccagcaagtagaagcaattgacaagaagaaagagtggcatcgggagattactgaaaagcttcaccgcaaggtggaaagtggttctggatgtctgagcatccacacggttccaacgagacttcgacgagtgaaggatgaggcctacaactgtcgcattgtctcaattggtcctttgcatctaggcaaccatgaccttgcagccatgagagagcgtaaatgggcttacatgcatcacttatttcagcgaattgaagatcgtcagcagtttctagagtgttggacagagtgcacgagtgctgtttatgatttagactcacaaattcgtggatgctacgctaaaaggatgagccacaaagacaagggacacaaggagcttgcagaagttgtattaattgacggatgcttcattctggaacttttcctcaggtatgaggaacacttgaatatgacactggattatcaatctgatccaatattcaatagtgcctggatgatcgcggctcttcagcatgatctagcactactcgaaaaccagatcccctttatgattctcgaacgtttatatgaggccattaagcctcatctaaagaatagtcgacctcgaccagactctgtcgctagccttgctcttactttttttcaacccatgaactataaggcttttttagaagattgggacactcagtacaaccatttgcttgatgtcttgcacaaattttacctcccaagtaattgtgacatctcagtagaaattgaaatgattaccgaaatgaaacatcattccagacctgaaccagtattcggcagtactaaaaaatggggattcaatttttgtgcttcagagctttcggcggctggaatcgagtttcagaagcagcagaggacggaccatttgttgaacataactttcagcaggggagtaattaaaattccaccgattttcattgacgattcactcttgaggaacttgattgctttcgagcaatgcagtcttggcagcctgcatcacatgacatcatacgcaattctcttgaagagtctcattcgttccccgcgagatatcagactacttaagcaaagaggtatcataagttccgattggattagagaagaagagtacttgtctcaactcaaaagtatacttgatgaagttgttgtgaaggagttctactttggtgatttgtgtgacaaagtgaatgcttaccacggcaagttctggtttcgcagaggtataaagtacatttatcgcacttatttctccacagcatggagtatgatatcatttgttgcagccattatacttttcattctcacagctttacaaacattctatactgtccgccctcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

551

Amino Acids

64.44

Weight (kDa)

7.88

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016364)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11830
prunus_persica	Prupe.2G285000_v2.0.a1 Prupe.6G274300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463541
rosa_laevigata	RLG00000024772
rosa_multiflora	Rmu_sc0000923.1_g000024 Rmu_sc0010184.1_g000008 Rmu_sc0039690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416470
rosa_rugosa	Rorug03G0065800
rosa_samantha	Rh3AG122800 Rh3BG127900 Rh3CG129400 Rh3DG128300
rosa_wichuraiana	Rw0G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	1572
AccI	GTMKAC	2 cut(s)	901, 1444
AccII	CGCG	2 cut(s)	803, 1360
AciI	CCGC	6 cut(s)	71, 370, 803, 1157, 1358, 1645
AclI	AACGTT	1 cut(s)	862
AclWI	GGATC	2 cut(s)	767, 835
AcsI	RAATTY	5 cut(s)	101, 290, 624, 1019, 1233
AcuI	CTGAAG	2 cut(s)	794, 1128
AfaI	GTAC	5 cut(s)	115, 992, 1114, 1424, 1544
AfiI	CCNNNNNNNGG	3 cut(s)	376, 1106, 1572
AflII	CTTAAG	1 cut(s)	1376
AgsI	TTSAA	8 cut(s)	557, 748, 784, 947, 1061, 1132, 1204, 1339
AjnI	CCWGG	2 cut(s)	163, 791
AluBI	AGCT	5 cut(s)	243, 364, 679, 1150, 1622
AluI	AGCT	5 cut(s)	243, 364, 679, 1150, 1622
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	4 cut(s)	415, 469, 1349, 1434
Alw44I	GTGCAC	1 cut(s)	592
AlwI	GGATC	2 cut(s)	767, 835
AlwNI	CAGNNNCTG	1 cut(s)	917
AoxI	GGCC	2 cut(s)	444, 873
ApaLI	GTGCAC	1 cut(s)	592
ApeKI	GCWGC	4 cut(s)	503, 1180, 1302, 1595
ApoI	RAATTY	5 cut(s)	101, 290, 624, 1019, 1233
ArsI	GACNNNNNNTTYG	4 cut(s)	239, 271, 1180, 1212
AseI	ATTAAT	1 cut(s)	695
Asp700I	GAANNNNTTC	2 cut(s)	363, 1469
AspS9I	GGNCC	3 cut(s)	255, 473, 1192
AsuHPI	GGTGA	2 cut(s)	359, 1493
AsuNHI	GCTAGC	1 cut(s)	923
AvaII	GGWCC	3 cut(s)	255, 473, 1192
AxyI	CCTNAGG	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	596
BarI	GAAGNNNNNNTAC	2 cut(s)	1457, 1489
BauI	CACGAG	1 cut(s)	595
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	4 cut(s)	515, 1192, 1314, 1607
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	1528
BciT130I	CCWGG	2 cut(s)	165, 793
BcoDI	GTCTC	4 cut(s)	415, 469, 1349, 1434
BfaI	CTAG	4 cut(s)	485, 575, 821, 924
BfrI	CTTAAG	1 cut(s)	1376
BfuAI	ACCTGC	1 cut(s)	283
BisI	GCNGC	6 cut(s)	504, 804, 1158, 1181, 1303, 1596
BlsI	GCNGC	6 cut(s)	505, 805, 1159, 1182, 1304, 1597
BmcAI	AGTACT	2 cut(s)	1114, 1424
Bme1390I	CCNGG	2 cut(s)	165, 793
Bme18I	GGWCC	3 cut(s)	255, 473, 1192
BmgT120I	GGNCC	3 cut(s)	255, 473, 1192
BmiI	GGNNCC	2 cut(s)	131, 414
BmrFI	CCNGG	2 cut(s)	165, 793
BmsI	GCATC	7 cut(s)	352, 411, 490, 544, 623, 695, 1318
BmtI	GCTAGC	1 cut(s)	927
BpuEI	CTTGAG	1 cut(s)	1285
BsaJI	CCNNGG	2 cut(s)	164, 1510
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 1106, 1572
Bse1I	ACTGG	3 cut(s)	69, 762, 1100
Bse21I	CCTNAGG	1 cut(s)	728
Bse3DI	GCAATG	1 cut(s)	1295
BseBI	CCWGG	2 cut(s)	165, 793
BseDI	CCNNGG	2 cut(s)	164, 1510
BseGI	GGATG	7 cut(s)	398, 402, 445, 638, 654, 710, 801
BseLI	CCNNNNNNNGG	3 cut(s)	376, 1106, 1572
BseMI	GCAATG	1 cut(s)	1295
BseMII	CTCAG	4 cut(s)	389, 742, 1001, 1062
BseNI	ACTGG	3 cut(s)	69, 762, 1100
BseSI	GKGCMC	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	515, 1192, 1314, 1607
Bsh1236I	CGCG	2 cut(s)	803, 1360
BshFI	GGCC	2 cut(s)	446, 875
BsiHKAI	GWGCWC	1 cut(s)	596
BslFI	GGGAC	2 cut(s)	681, 995
BslI	CCNNNNNNNGG	3 cut(s)	376, 1106, 1572
BsmAI	GTCTC	4 cut(s)	415, 469, 1349, 1434
BsmFI	GGGAC	2 cut(s)	681, 995
BsmI	GAATGC	2 cut(s)	15, 1507
BsnI	GGCC	2 cut(s)	446, 875
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
BspACI	CCGC	6 cut(s)	71, 370, 803, 1157, 1358, 1645
BspANI	GGCC	2 cut(s)	446, 875
BspCNI	CTCAG	4 cut(s)	390, 741, 1000, 1061
BspFNI	CGCG	2 cut(s)	803, 1360
BspLI	GGNNCC	2 cut(s)	131, 414
BspMI	ACCTGC	1 cut(s)	283
BspOI	GCTAGC	1 cut(s)	927
BspPI	GGATC	2 cut(s)	767, 835
BspQI	GCTCTTC	1 cut(s)	813
BspTI	CTTAAG	1 cut(s)	1376
BsrDI	GCAATG	1 cut(s)	1295
BsrI	ACTGG	3 cut(s)	69, 762, 1100
BssECI	CCNNGG	2 cut(s)	164, 1510
BssMI	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
BssNAI	GTATAC	1 cut(s)	1445
BssSI	CACGAG	1 cut(s)	595
Bst1107I	GTATAC	1 cut(s)	1445
Bst2BI	CACGAG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	165, 793
Bst4CI	ACNGT	3 cut(s)	412, 455, 1642
Bst6I	CTCTTC	4 cut(s)	63, 813, 1334, 1413
BstAFI	CTTAAG	1 cut(s)	1376
BstC8I	GCNNGC	3 cut(s)	681, 925, 1307
BstDEI	CTNAG	4 cut(s)	398, 728, 987, 1048
BstDSI	CCRYGG	1 cut(s)	1510
BstF5I	GGATG	7 cut(s)	398, 402, 445, 638, 654, 710, 801
BstFNI	CGCG	2 cut(s)	803, 1360
BstKTI	GATC	6 cut(s)	121, 562, 775, 801, 820, 843
BstMAI	GTCTC	4 cut(s)	415, 469, 1349, 1434
BstMBI	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	929, 1299
BstNI	CCWGG	2 cut(s)	165, 793
BstNSI	RCATGY	1 cut(s)	535
BstSCI	CCNGG	2 cut(s)	163, 791
BstSLI	GKGCMC	1 cut(s)	596
BstUI	CGCG	2 cut(s)	803, 1360
BstV1I	GCAGC	4 cut(s)	515, 1192, 1314, 1607
BstX2I	RGATCY	1 cut(s)	840
BstYI	RGATCY	1 cut(s)	840
BstZ17I	GTATAC	1 cut(s)	1445
Bsu36I	CCTNAGG	1 cut(s)	728
BsuRI	GGCC	2 cut(s)	446, 875
BtgI	CCRYGG	1 cut(s)	1510
BtsCI	GGATG	7 cut(s)	398, 402, 445, 638, 654, 710, 801
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	62, 232, 755
BveI	ACCTGC	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	681, 925, 1307
CaiI	CAGNNNCTG	1 cut(s)	917
Cfr13I	GGNCC	3 cut(s)	255, 473, 1192
Csp6I	GTAC	5 cut(s)	114, 991, 1113, 1423, 1543
CviAII	CATG	7 cut(s)	494, 508, 532, 815, 952, 1315, 1572
CviQI	GTAC	5 cut(s)	114, 991, 1113, 1423, 1543
DdeI	CTNAG	4 cut(s)	398, 728, 987, 1048
DpnI	GATC	6 cut(s)	120, 561, 774, 800, 819, 842
DpnII	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
Eam1104I	CTCTTC	4 cut(s)	63, 813, 1334, 1413
EarI	CTCTTC	4 cut(s)	63, 813, 1334, 1413
EciI	GGCGGA	1 cut(s)	1634
Eco147I	AGGCCT	1 cut(s)	446
Eco32I	GATATC	2 cut(s)	1366, 1584
Eco47I	GGWCC	3 cut(s)	255, 473, 1192
Eco57I	CTGAAG	2 cut(s)	794, 1128
Eco81I	CCTNAGG	1 cut(s)	728
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	163, 791
EcoRV	GATATC	2 cut(s)	1366, 1584
EcoT22I	ATGCAT	1 cut(s)	537
FaeI	CATG	7 cut(s)	497, 511, 535, 818, 955, 1318, 1575
FaqI	GGGAC	2 cut(s)	681, 995
FatI	CATG	7 cut(s)	493, 507, 531, 814, 951, 1314, 1571
FauI	CCCGC	1 cut(s)	1365
FblI	GTMKAC	2 cut(s)	901, 1444
Fnu4HI	GCNGC	6 cut(s)	504, 804, 1158, 1181, 1303, 1596
FokI	GGATG	7 cut(s)	389, 405, 452, 645, 661, 717, 808
Fsp4HI	GCNGC	6 cut(s)	504, 804, 1158, 1181, 1303, 1596
FspBI	CTAG	4 cut(s)	485, 575, 821, 924
GluI	GCNGC	6 cut(s)	504, 804, 1158, 1181, 1303, 1596
HaeIII	GGCC	2 cut(s)	446, 875
Hin1II	CATG	7 cut(s)	497, 511, 535, 818, 955, 1318, 1575
HincII	GTYRAC	1 cut(s)	902
HindII	GTYRAC	1 cut(s)	902
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	8 cut(s)	152, 617, 853, 914, 1128, 1164, 1256, 1342
HphI	GGTGA	2 cut(s)	359, 1493
Hpy166II	GTNNAC	3 cut(s)	594, 902, 1445
Hpy188I	TCNGA	9 cut(s)	78, 123, 259, 399, 772, 1147, 1176, 1370, 1402
Hpy188III	TCNNGA	9 cut(s)	20, 347, 390, 575, 716, 857, 1089, 1264, 1336
Hpy8I	GTNNAC	3 cut(s)	594, 902, 1445
Hpy99I	CGWCG	2 cut(s)	263, 432
HpyAV	CCTTC	2 cut(s)	430, 1459
HpyCH4III	ACNGT	3 cut(s)	412, 455, 1642
HpyCH4IV	ACGT	1 cut(s)	862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	929, 1299
HpyF3I	CTNAG	4 cut(s)	398, 728, 987, 1048
HpySE526I	ACGT	1 cut(s)	862
Hsp92II	CATG	7 cut(s)	497, 511, 535, 818, 955, 1318, 1575
Kzo9I	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	2 cut(s)	129, 676
Lsp1109I	GCAGC	4 cut(s)	515, 1192, 1314, 1607
LweI	GCATC	7 cut(s)	352, 411, 490, 544, 623, 695, 1318
MaeI	CTAG	4 cut(s)	485, 575, 821, 924
MaeII	ACGT	1 cut(s)	862
MaeIII	GTNAC	3 cut(s)	32, 1040, 1490
MalI	GATC	6 cut(s)	120, 561, 774, 800, 819, 842
MboI	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
MboII	GAAGA	9 cut(s)	50, 184, 343, 569, 800, 986, 1351, 1427, 1430
MfeI	CAATTG	2 cut(s)	321, 468
MflI	RGATCY	1 cut(s)	840
MhlI	GDGCHC	1 cut(s)	596
MlyI	GAGTC	4 cut(s)	161, 611, 908, 1351
MmeI	TCCRAC	3 cut(s)	282, 440, 563
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	2 cut(s)	363, 1469
MseI	TTAA	4 cut(s)	695, 879, 1230, 1377
MspCI	CTTAAG	1 cut(s)	1376
MspR9I	CCNGG	2 cut(s)	165, 793
MunI	CAATTG	2 cut(s)	321, 468
Mva1269I	GAATGC	2 cut(s)	15, 1507
MvaI	CCWGG	2 cut(s)	165, 793
MvnI	CGCG	2 cut(s)	803, 1360
MwoI	GCNNNNNNNGC	2 cut(s)	929, 1299
NdeII	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
NheI	GCTAGC	1 cut(s)	923
NlaIII	CATG	7 cut(s)	497, 511, 535, 818, 955, 1318, 1575
NlaIV	GGNNCC	2 cut(s)	131, 414
NmuCI	GTSAC	2 cut(s)	1040, 1490
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	2 cut(s)	416, 1357
PctI	GAATGC	2 cut(s)	15, 1507
PdmI	GAANNNNTTC	2 cut(s)	363, 1469
PfeI	GAWTC	4 cut(s)	853, 1128, 1164, 1256
PflFI	GACNNNGTC	1 cut(s)	917
PflMI	CCANNNNNTGG	1 cut(s)	1572
PkrI	GCNGC	6 cut(s)	505, 805, 1159, 1182, 1304, 1597
PleI	GAGTC	4 cut(s)	160, 611, 908, 1350
PpsI	GAGTC	4 cut(s)	160, 611, 908, 1350
PshBI	ATTAAT	1 cut(s)	695
Psp1406I	AACGTT	1 cut(s)	862
Psp6I	CCWGG	2 cut(s)	163, 791
PspGI	CCWGG	2 cut(s)	163, 791
PspN4I	GGNNCC	2 cut(s)	131, 414
PspPI	GGNCC	3 cut(s)	255, 473, 1192
PsrI	GAACNNNNNNTAC	2 cut(s)	1381, 1413
PstNI	CAGNNNCTG	1 cut(s)	917
PsuI	RGATCY	1 cut(s)	840
PsyI	GACNNNGTC	1 cut(s)	917
RsaI	GTAC	5 cut(s)	115, 992, 1114, 1424, 1544
RsaNI	GTAC	5 cut(s)	114, 991, 1113, 1423, 1543
SalI	GTCGAC	1 cut(s)	900
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	4 cut(s)	695, 879, 1230, 1377
SatI	GCNGC	6 cut(s)	504, 804, 1158, 1181, 1303, 1596
Sau3AI	GATC	6 cut(s)	118, 559, 772, 798, 817, 840
Sau96I	GGNCC	3 cut(s)	255, 473, 1192
ScaI	AGTACT	2 cut(s)	1114, 1424
SchI	GAGTC	4 cut(s)	161, 611, 908, 1351
ScrFI	CCNGG	2 cut(s)	165, 793
SduI	GDGCHC	1 cut(s)	596
SfaNI	GCATC	7 cut(s)	352, 411, 490, 544, 623, 695, 1318
SinI	GGWCC	3 cut(s)	255, 473, 1192
SmlI	CTYRAG	2 cut(s)	1264, 1376
SmoI	CTYRAG	2 cut(s)	1264, 1376
SseBI	AGGCCT	1 cut(s)	446
SsiI	CCGC	6 cut(s)	71, 370, 803, 1157, 1358, 1645
SspI	AATATT	1 cut(s)	780
SspMI	CTAG	4 cut(s)	485, 575, 821, 924
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	163, 791
TaaI	ACNGT	3 cut(s)	412, 455, 1642
TaiI	ACGT	1 cut(s)	865
TaqI	TCGA	7 cut(s)	427, 831, 858, 901, 907, 1167, 1284
TatI	WGTACW	4 cut(s)	990, 1112, 1422, 1542
TauI	GCSGC	2 cut(s)	806, 1160
TfiI	GAWTC	4 cut(s)	853, 1128, 1164, 1256
Tru1I	TTAA	4 cut(s)	695, 879, 1230, 1377
Tru9I	TTAA	4 cut(s)	695, 879, 1230, 1377
TscAI	CASTG	3 cut(s)	69, 232, 762
TseFI	GTSAC	2 cut(s)	1040, 1490
TseI	GCWGC	4 cut(s)	503, 1180, 1302, 1595
Tsp45I	GTSAC	2 cut(s)	1040, 1490
TspDTI	ATGAA	7 cut(s)	184, 700, 968, 1091, 1237, 1467, 1600
TspGWI	ACGGA	2 cut(s)	717, 1205
TspRI	CASTG	3 cut(s)	69, 232, 762
Tth111I	GACNNNGTC	1 cut(s)	917
Van91I	CCANNNNNTGG	1 cut(s)	1572
Vha464I	CTTAAG	1 cut(s)	1376
VneI	GTGCAC	1 cut(s)	592
VpaK11BI	GGWCC	3 cut(s)	255, 473, 1192
VspI	ATTAAT	1 cut(s)	695
XapI	RAATTY	5 cut(s)	101, 290, 624, 1019, 1233
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	1 cut(s)	535
XmiI	GTMKAC	2 cut(s)	901, 1444
XmnI	GAANNNNTTC	2 cut(s)	363, 1469
XspI	CTAG	4 cut(s)	485, 575, 821, 924
ZrmI	AGTACT	2 cut(s)	1114, 1424
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.