Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016364

Physical Location & Seq

Genomic Coordinates Reverse (-)

28197631 .. 28198935

Gene Structure 1305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

AGCTCATACTGGAAGCTGAACGGCAAAGGAAAATCTGCTGAGAGGAGTAATGAGGACATCCTACAACTGGAAGCAGAAGCAACTGATAAGAACGAATGGAAGCGGGAGATTACTAAAAAACTTCACCAGAAAGTGGCAACAGGGTCAGAAAACTTGAACATTTATAAAGTCCCAAAAAACCTTCGAAAAGTCAAGGATGAAGCATACAACTCTCGTATTGTCTCAATTGGACCCTTCCATCTAGGCAACCATGCCCTTGTAGCTATGAGACATCATAAATGGCATTACATGCAATATTTTTATGCACGAATAGAAGATCATCCACAATCCCTCCAATGTTTAGAAGTGTGTACAAATGCTATTTATGATTTAGATGAAAAGGTTCATGGATGCTATTCCGAAAAGATAGACCACATTGATAAGAATGTGCTAGCAGAAATCATGTTACTAGATGTTGCTTTATATTGGAACTTTTCCTCAGCTCTTCGCCATGATCTGATATTACTTGAAAACCAGATCCCCTTCTTTATTCTCAAAAGTTTGTATGATGCTATGAAGTCTCATCTTAAGGGTACACCAAACTCTGTCACTAGCCTTGCTCTTAAGTTCTTTGAAATGAACCAAAAGTCAACAAAAGAAGAGCCTGACACAAAAAACCATCATTTGCTTCATCTTTTGCACAAATTTTACCTCCCAAATTTAGATTCCATAACAACAAATCACCAACTGAAACGCAGGATTCCTAGGCCTGAACAAGCAGCTGCAACCAATATTAAAACATGGGGATTCAATTTTAGTGCTTCAAACCTTTTAAGGGCTGGGATTGAGTTTGAAAAAGGGTTGTCGGAGGACCATTTGTTAAACATAACTTTTGTCAAGGGAATAATCAGAATTCCACCAGTGGACATTCACTTGACATCAGATTCACTCTTTAGGAACCTGATCGCTTTTGAGCAATGCAGCCTTAGAAGTACGCATCATATTACTCGTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

332

Amino Acids

38.39

Weight (kDa)

8.82

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016364)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g11830
prunus_persica	Prupe.2G285000_v2.0.a1 Prupe.6G274300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0463541
rosa_laevigata	RLG00000024772
rosa_multiflora	Rmu_sc0000923.1_g000024 Rmu_sc0010184.1_g000008 Rmu_sc0039690.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416470
rosa_rugosa	Rorug03G0065800
rosa_samantha	Rh3AG122800 Rh3BG127900 Rh3CG129400 Rh3DG128300
rosa_wichuraiana	Rw0G010500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	133
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	3 cut(s)	683, 697, 891
AfaI	GTAC	3 cut(s)	352, 574, 973
AfiI	CCNNNNNNNGG	3 cut(s)	67, 133, 814
AflII	CTTAAG	2 cut(s)	566, 602
AgsI	TTSAA	6 cut(s)	157, 509, 614, 790, 804, 833
AjuI	GAANNNNNNNTTGG	2 cut(s)	688, 720
AluBI	AGCT	5 cut(s)	3, 16, 263, 482, 761
AluI	AGCT	5 cut(s)	3, 16, 263, 482, 761
Alw26I	GTCTC	3 cut(s)	226, 262, 564
AlwI	GGATC	1 cut(s)	511
AoxI	GGCC	1 cut(s)	746
ApeKI	GCWGC	3 cut(s)	758, 761, 960
ApoI	RAATTY	3 cut(s)	683, 697, 891
Asp700I	GAANNNNTTC	1 cut(s)	381
AspA2I	CCTAGG	1 cut(s)	743
AspS9I	GGNCC	2 cut(s)	230, 850
AsuHPI	GGTGA	2 cut(s)	116, 713
AsuII	TTCGAA	1 cut(s)	184
AsuNHI	GCTAGC	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	230, 850
AvrII	CCTAGG	1 cut(s)	743
BbvCI	CCTCAGC	1 cut(s)	478
BbvI	GCAGC	3 cut(s)	748, 770, 972
BccI	CCATC	2 cut(s)	246, 666
BceAI	ACGGC	1 cut(s)	37
BcoDI	GTCTC	3 cut(s)	226, 262, 564
BfaI	CTAG	5 cut(s)	242, 431, 449, 591, 744
BfrI	CTTAAG	2 cut(s)	566, 602
BisI	GCNGC	3 cut(s)	759, 762, 961
BlnI	CCTAGG	1 cut(s)	743
BlsI	GCNGC	3 cut(s)	760, 763, 962
Bme18I	GGWCC	2 cut(s)	230, 850
BmgT120I	GGNCC	2 cut(s)	230, 850
BmiI	GGNNCC	2 cut(s)	232, 938
BmsI	GCATC	3 cut(s)	380, 538, 985
BmtI	GCTAGC	1 cut(s)	434
Bpu10I	CCTNAGC	1 cut(s)	478
Bpu14I	TTCGAA	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	743
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 133, 814
Bse1I	ACTGG	3 cut(s)	14, 72, 899
Bse3DI	GCAATG	1 cut(s)	962
BseDI	CCNNGG	1 cut(s)	743
BseGI	GGATG	4 cut(s)	57, 202, 319, 395
BseLI	CCNNNNNNNGG	3 cut(s)	67, 133, 814
BseMI	GCAATG	1 cut(s)	962
BseMII	CTCAG	2 cut(s)	30, 492
BseNI	ACTGG	3 cut(s)	14, 72, 899
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	3 cut(s)	748, 770, 972
BseYI	CCCAGC	1 cut(s)	818
BshFI	GGCC	1 cut(s)	748
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	67, 133, 814
BsmAI	GTCTC	3 cut(s)	226, 262, 564
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	748
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1407I	TGTACA	1 cut(s)	350
Bsp143I	GATC	4 cut(s)	316, 493, 516, 942
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	2 cut(s)	31, 491
BspLI	GGNNCC	2 cut(s)	232, 938
BspOI	GCTAGC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	511
BspQI	GCTCTTC	2 cut(s)	489, 633
BspT104I	TTCGAA	1 cut(s)	184
BspTI	CTTAAG	2 cut(s)	566, 602
BsrDI	GCAATG	1 cut(s)	962
BsrGI	TGTACA	1 cut(s)	350
BsrI	ACTGG	3 cut(s)	14, 72, 899
BssECI	CCNNGG	1 cut(s)	743
BssMI	GATC	4 cut(s)	316, 493, 516, 942
BssT1I	CCWWGG	1 cut(s)	743
Bst6I	CTCTTC	2 cut(s)	489, 633
BstAFI	CTTAAG	2 cut(s)	566, 602
BstAPI	GCANNNNNTGC	1 cut(s)	289
BstAUI	TGTACA	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	39, 478, 965
BstF5I	GGATG	4 cut(s)	57, 202, 319, 395
BstKTI	GATC	4 cut(s)	319, 496, 519, 945
BstMAI	GTCTC	3 cut(s)	226, 262, 564
BstMBI	GATC	4 cut(s)	316, 493, 516, 942
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 289
BstNSI	RCATGY	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	748, 770, 972
BstX2I	RGATCY	1 cut(s)	516
BstYI	RGATCY	1 cut(s)	516
BsuRI	GGCC	1 cut(s)	748
BtsCI	GGATG	4 cut(s)	57, 202, 319, 395
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	230, 850
Csp6I	GTAC	3 cut(s)	351, 573, 972
CviAII	CATG	6 cut(s)	251, 289, 386, 442, 491, 780
CviQI	GTAC	3 cut(s)	351, 573, 972
DdeI	CTNAG	3 cut(s)	39, 478, 965
DpnI	GATC	4 cut(s)	318, 495, 518, 944
DpnII	GATC	4 cut(s)	316, 493, 516, 942
Eam1104I	CTCTTC	2 cut(s)	489, 633
EarI	CTCTTC	2 cut(s)	489, 633
Eco130I	CCWWGG	1 cut(s)	743
Eco147I	AGGCCT	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	230, 850
EcoRI	GAATTC	1 cut(s)	891
EcoT14I	CCWWGG	1 cut(s)	743
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	6 cut(s)	254, 292, 389, 445, 494, 783
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	6 cut(s)	250, 288, 385, 441, 490, 779
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	759, 762, 961
FokI	GGATG	4 cut(s)	44, 209, 306, 402
Fsp4HI	GCNGC	3 cut(s)	759, 762, 961
FspBI	CTAG	5 cut(s)	242, 431, 449, 591, 744
GluI	GCNGC	3 cut(s)	759, 762, 961
GsaI	CCCAGC	1 cut(s)	822
HaeIII	GGCC	1 cut(s)	748
Hin1II	CATG	6 cut(s)	254, 292, 389, 445, 494, 783
HincII	GTYRAC	1 cut(s)	630
HindII	GTYRAC	1 cut(s)	630
HinfI	GANTC	4 cut(s)	704, 739, 786, 923
HphI	GGTGA	2 cut(s)	116, 713
Hpy166II	GTNNAC	4 cut(s)	351, 575, 630, 904
Hpy188I	TCNGA	6 cut(s)	148, 400, 498, 847, 890, 922
Hpy8I	GTNNAC	4 cut(s)	351, 575, 630, 904
HpyAV	CCTTC	3 cut(s)	191, 244, 532
HpyCH4V	TGCA	5 cut(s)	292, 305, 679, 764, 960
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 289
HpyF3I	CTNAG	3 cut(s)	39, 478, 965
Hsp92II	CATG	6 cut(s)	254, 292, 389, 445, 494, 783
Kzo9I	GATC	4 cut(s)	316, 493, 516, 942
LguI	GCTCTTC	2 cut(s)	489, 633
Lsp1109I	GCAGC	3 cut(s)	748, 770, 972
LweI	GCATC	3 cut(s)	380, 538, 985
MaeI	CTAG	5 cut(s)	242, 431, 449, 591, 744
MaeIII	GTNAC	2 cut(s)	444, 586
MalI	GATC	4 cut(s)	318, 495, 518, 944
MboI	GATC	4 cut(s)	316, 493, 516, 942
MboII	GAAGA	3 cut(s)	326, 476, 650
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	516
MluCI	AATT	5 cut(s)	225, 683, 697, 790, 891
MmeI	TCCRAC	1 cut(s)	825
MnlI	CCTC	6 cut(s)	36, 46, 341, 487, 701, 841
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	5 cut(s)	567, 603, 774, 812, 860
MspA1I	CMGCKG	1 cut(s)	761
MspCI	CTTAAG	2 cut(s)	566, 602
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	260, 289
NdeII	GATC	4 cut(s)	316, 493, 516, 942
NheI	GCTAGC	1 cut(s)	430
NlaIII	CATG	6 cut(s)	254, 292, 389, 445, 494, 783
NlaIV	GGNNCC	2 cut(s)	232, 938
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	748
PciSI	GCTCTTC	2 cut(s)	489, 633
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	4 cut(s)	704, 739, 786, 923
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	760, 763, 962
PsiI	TTATAA	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	818
PspN4I	GGNNCC	2 cut(s)	232, 938
PspPI	GGNCC	2 cut(s)	230, 850
PsuI	RGATCY	1 cut(s)	516
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	3 cut(s)	352, 574, 973
RsaNI	GTAC	3 cut(s)	351, 573, 972
SapI	GCTCTTC	2 cut(s)	489, 633
SaqAI	TTAA	5 cut(s)	567, 603, 774, 812, 860
SatI	GCNGC	3 cut(s)	759, 762, 961
Sau3AI	GATC	4 cut(s)	316, 493, 516, 942
Sau96I	GGNCC	2 cut(s)	230, 850
SetI	ASST	9 cut(s)	18, 183, 265, 384, 484, 693, 763, 810, 942
SfaNI	GCATC	3 cut(s)	380, 538, 985
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	2 cut(s)	230, 850
SmlI	CTYRAG	2 cut(s)	566, 602
SmoI	CTYRAG	2 cut(s)	566, 602
Sse9I	AATT	5 cut(s)	225, 683, 697, 790, 891
SseBI	AGGCCT	1 cut(s)	748
SsiI	CCGC	1 cut(s)	103
SspI	AATATT	2 cut(s)	296, 772
SspMI	CTAG	5 cut(s)	242, 431, 449, 591, 744
StuI	AGGCCT	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	743
TaqI	TCGA	1 cut(s)	184
TasI	AATT	5 cut(s)	225, 683, 697, 790, 891
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	4 cut(s)	704, 739, 786, 923
Tru1I	TTAA	5 cut(s)	567, 603, 774, 812, 860
Tru9I	TTAA	5 cut(s)	567, 603, 774, 812, 860
TscAI	CASTG	1 cut(s)	906
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	3 cut(s)	758, 761, 960
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	6 cut(s)	213, 374, 390, 569, 632, 659
TspRI	CASTG	1 cut(s)	906
Van91I	CCANNNNNTGG	1 cut(s)	133
Vha464I	CTTAAG	2 cut(s)	566, 602
VpaK11BI	GGWCC	2 cut(s)	230, 850
XapI	RAATTY	3 cut(s)	683, 697, 891
XceI	RCATGY	1 cut(s)	292
XmaJI	CCTAGG	1 cut(s)	743
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	5 cut(s)	242, 431, 449, 591, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.